Wall clock time and date at job start Tue Mar 9 2021 18:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34744 * 116.99587 * 2 1 4 4 O 1.21502 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.47472 * 119.99956 * 180.02562 * 3 2 1 6 6 C 1.39773 * 120.09077 * 0.02562 * 5 3 2 7 7 C 1.37698 * 119.90593 * 179.97438 * 6 5 3 8 8 C 1.38992 * 120.09357 * 0.02562 * 7 6 5 9 9 O 1.35702 * 119.90647 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99941 * 6.13845 * 9 8 7 11 11 Si 1.86300 * 109.47745 * 77.72337 * 10 9 8 12 12 C 1.86294 * 109.47093 * 66.37519 * 11 10 9 13 13 C 1.86298 * 109.47474 * 186.37848 * 11 10 9 14 14 C 1.86305 * 109.46798 * 306.37507 * 11 10 9 15 15 C 1.39031 * 120.18829 * 0.02562 * 8 7 6 16 16 C 1.50696 * 119.95794 * 179.97438 * 15 8 7 17 17 O 1.42910 * 109.46823 * 74.99685 * 16 15 8 18 18 Si 1.86296 * 109.47597 * 194.99727 * 16 15 8 19 19 H 1.48498 * 109.46989 * 59.99704 * 18 16 15 20 20 H 1.48505 * 109.47160 * 300.00402 * 18 16 15 21 21 H 1.48500 * 109.47428 * 180.02562 * 18 16 15 22 22 C 1.37660 * 120.08960 * 0.24936 * 15 8 7 23 23 H 1.09007 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46890 * 299.99403 * 1 2 3 25 25 H 1.08993 * 109.47544 * 59.99327 * 1 2 3 26 26 H 1.08001 * 120.04687 * 359.97235 * 6 5 3 27 27 H 1.08005 * 119.95252 * 179.97438 * 7 6 5 28 28 H 1.09007 * 109.47296 * 197.72408 * 10 9 8 29 29 H 1.09006 * 109.47300 * 317.71853 * 10 9 8 30 30 H 1.09000 * 109.47278 * 60.00187 * 12 11 10 31 31 H 1.08999 * 109.47431 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47240 * 300.00417 * 12 11 10 33 33 H 1.08995 * 109.47419 * 59.99558 * 13 11 10 34 34 H 1.08999 * 109.47049 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.46752 * 299.99725 * 13 11 10 36 36 H 1.09002 * 109.47148 * 54.65314 * 14 11 10 37 37 H 1.08994 * 109.46799 * 174.64590 * 14 11 10 38 38 H 1.08994 * 109.47525 * 294.65310 * 14 11 10 39 39 H 1.09002 * 109.46993 * 315.00166 * 16 15 8 40 40 H 0.96696 * 113.99801 * 299.99496 * 17 16 15 41 41 H 1.08005 * 120.04534 * 179.70904 * 22 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5363 1.2779 -0.0006 6 6 4.2995 0.1069 -0.0017 7 6 5.6744 0.1835 -0.0027 8 6 6.3033 1.4230 -0.0022 9 8 7.6585 1.4940 -0.0027 10 6 8.3726 0.2639 -0.1400 11 14 8.3492 -0.2722 -1.9240 12 6 9.3251 0.9390 -2.9492 13 6 9.1094 -1.9664 -2.0734 14 6 6.5894 -0.3254 -2.5333 15 6 5.5480 2.5902 0.0000 16 6 6.2353 3.9313 0.0011 17 8 6.7619 4.1978 -1.3004 18 14 5.0092 5.2573 0.4584 19 1 4.4620 4.9803 1.8108 20 1 3.9015 5.2696 -0.5307 21 1 5.6864 6.5789 0.4589 22 6 4.1731 2.5226 0.0068 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 3.8116 -0.8566 -0.0016 27 1 6.2649 -0.7209 -0.0031 28 1 9.4040 0.4044 0.1837 29 1 7.8997 -0.5014 0.4757 30 1 10.3546 0.9701 -2.5927 31 1 9.3110 0.6256 -3.9931 32 1 8.8802 1.9303 -2.8618 33 1 8.5385 -2.6751 -1.4735 34 1 9.0961 -2.2799 -3.1173 35 1 10.1390 -1.9353 -1.7169 36 1 6.1150 0.6403 -2.3584 37 1 6.5810 -0.5461 -3.6006 38 1 6.0426 -1.1011 -1.9975 39 1 7.0484 3.9222 0.7271 40 1 7.4085 3.5461 -1.6041 41 1 3.5871 3.4298 0.0132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_2787264_3095236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:03:30 Heat of formation + Delta-G solvation = -155.570482 kcal Electronic energy + Delta-G solvation = -23077.872399 eV Core-core repulsion = 19661.627729 eV Total energy + Delta-G solvation = -3416.244671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98035 -41.14565 -38.65928 -37.65670 -37.40934 -33.14071 -31.93352 -29.62166 -28.84622 -28.33603 -28.24594 -27.79676 -26.73735 -24.69167 -23.04896 -21.78993 -19.45695 -18.96863 -18.19597 -18.02179 -17.46854 -17.20888 -16.87173 -16.50113 -15.68275 -15.56981 -15.03528 -14.81511 -14.61881 -14.39718 -14.11131 -13.86694 -13.84491 -13.71645 -13.66707 -13.33376 -13.19208 -13.17205 -12.98643 -12.93056 -12.81960 -12.39273 -12.31211 -11.93082 -11.88698 -11.79231 -11.26709 -11.09986 -10.82022 -10.74650 -10.73806 -10.13163 -9.22157 -0.44338 0.07127 1.12260 1.31256 1.42777 1.45579 1.60298 1.61450 1.76194 1.87901 1.88180 2.33555 2.52381 2.62312 3.42817 3.61515 3.63264 3.87475 3.94648 4.07063 4.21786 4.24875 4.28419 4.28799 4.50547 4.63485 4.71315 4.77130 4.81229 4.83176 4.86015 4.87473 4.88190 4.91420 4.97003 5.05276 5.11878 5.24617 5.39836 5.59569 5.67503 5.69088 6.18961 6.57730 6.66632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.510 3.490 4 O -0.546 6.546 5 C -0.182 4.182 6 C -0.008 4.008 7 C -0.210 4.210 8 C 0.181 3.819 9 O -0.290 6.290 10 C -0.268 4.268 11 Si 1.065 2.935 12 C -0.468 4.468 13 C -0.460 4.460 14 C -0.472 4.472 15 C -0.171 4.171 16 C -0.074 4.074 17 O -0.548 6.548 18 Si 1.013 2.987 19 H -0.246 1.246 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.037 4.037 23 H 0.136 0.864 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.165 0.835 27 H 0.176 0.824 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.379 0.621 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -7.180 0.725 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.357 3.643 4 O -0.438 6.438 5 C -0.183 4.183 6 C -0.026 4.026 7 C -0.228 4.228 8 C 0.133 3.867 9 O -0.201 6.201 10 C -0.386 4.386 11 Si 1.256 2.744 12 C -0.574 4.574 13 C -0.568 4.568 14 C -0.578 4.578 15 C -0.172 4.172 16 C -0.183 4.183 17 O -0.355 6.355 18 Si 0.836 3.164 19 H -0.169 1.169 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.055 4.055 23 H 0.154 0.846 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.182 0.818 27 H 0.193 0.807 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.228 0.772 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.190 -5.580 1.053 6.513 hybrid contribution 0.149 -0.697 -0.281 0.766 sum 3.339 -6.276 0.771 7.151 Atomic orbital electron populations 1.23584 0.74346 1.05948 1.02530 1.86517 1.25105 1.31441 1.83882 1.21390 0.89602 0.81510 0.71773 1.90837 1.67672 1.37223 1.48054 1.18908 0.88670 0.95286 1.15484 1.21487 0.93205 0.98059 0.89871 1.21613 0.95413 0.97821 1.07957 1.19146 0.83762 0.93111 0.90659 1.85976 1.13878 1.34407 1.85864 1.28655 0.99963 0.88318 1.21698 0.78700 0.66098 0.66132 0.63422 1.26316 1.09460 1.11969 1.09670 1.26189 1.07751 1.17695 1.05133 1.26736 1.19801 1.04454 1.06803 1.19490 0.92263 0.95352 1.10110 1.25004 1.04577 0.99522 0.89206 1.86688 1.62857 1.53949 1.32052 0.84463 0.76017 0.76508 0.79431 1.16888 1.19916 1.18431 1.21016 0.93570 0.97431 0.93480 0.84608 0.91991 0.92093 0.81751 0.80671 0.85215 0.88815 0.90802 0.91441 0.91239 0.90254 0.91051 0.90616 0.92270 0.91304 0.89831 0.88384 0.77158 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.57 113.37 1.20 1.19 16 2 O -0.35 -1.57 9.81 -56.54 -0.55 -2.13 16 3 C 0.51 4.67 7.89 70.26 0.55 5.22 16 4 O -0.55 -8.53 16.13 19.83 0.32 -8.21 16 5 C -0.18 -1.03 5.87 -20.09 -0.12 -1.15 16 6 C -0.01 0.01 9.61 22.51 0.22 0.22 16 7 C -0.21 0.78 5.57 22.32 0.12 0.91 16 8 C 0.18 -0.13 5.10 22.64 0.12 -0.01 16 9 O -0.29 1.02 8.67 -90.22 -0.78 0.24 16 10 C -0.27 2.51 5.31 113.37 0.60 3.11 16 11 Si 1.07 -10.71 11.67 68.60 0.80 -9.91 16 12 C -0.47 2.76 8.65 113.37 0.98 3.74 16 13 C -0.46 4.16 8.65 113.37 0.98 5.14 16 14 C -0.47 2.74 7.03 113.37 0.80 3.53 16 15 C -0.17 -0.61 5.28 -19.81 -0.10 -0.72 16 16 C -0.07 -0.22 2.33 71.23 0.17 -0.05 16 17 O -0.55 -2.14 12.65 -148.98 -1.89 -4.03 16 18 Si 1.01 5.59 25.73 68.60 1.77 7.35 16 19 H -0.25 -1.23 7.11 99.48 0.71 -0.52 16 20 H -0.27 -2.62 6.74 99.48 0.67 -1.95 16 21 H -0.26 -1.67 7.11 99.48 0.71 -0.96 16 22 C -0.04 -0.26 8.20 22.51 0.18 -0.07 16 23 H 0.14 -0.93 8.14 -2.38 -0.02 -0.95 16 24 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.16 -0.90 7.60 -2.91 -0.02 -0.92 16 27 H 0.18 -1.85 4.73 -2.91 -0.01 -1.86 16 28 H 0.13 -1.54 7.96 -2.38 -0.02 -1.56 16 29 H 0.09 -1.14 6.06 -2.38 -0.01 -1.15 16 30 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.08 -0.81 7.96 -2.39 -0.02 -0.82 16 34 H 0.07 -0.53 7.96 -2.39 -0.02 -0.55 16 35 H 0.07 -0.70 7.96 -2.39 -0.02 -0.72 16 36 H 0.06 -0.13 6.25 -2.39 -0.01 -0.15 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.08 -0.65 6.54 -2.39 -0.02 -0.67 16 39 H 0.10 -0.06 7.82 -2.39 -0.02 -0.08 16 40 H 0.38 -0.73 8.60 -74.06 -0.64 -1.36 16 41 H 0.13 1.21 4.46 -2.91 -0.01 1.20 16 Total: 0.00 -16.60 335.83 6.48 -10.11 By element: Atomic # 1 Polarization: -15.63 SS G_CDS: 1.12 Total: -14.51 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.70 Total: 21.07 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -2.90 Total: -14.12 kcal Atomic # 14 Polarization: -5.12 SS G_CDS: 2.57 Total: -2.55 kcal Total: -16.60 6.48 -10.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_2787264_3095236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.460 kcal (2) G-P(sol) polarization free energy of solvation -16.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds