Wall clock time and date at job start Tue Mar 9 2021 18:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53000 * 109.47024 * 240.00183 * 2 1 3 5 5 Si 1.86299 * 109.47473 * 120.00189 * 2 1 3 6 6 C 1.86305 * 109.46999 * 299.99889 * 5 2 1 7 7 C 1.86301 * 109.47445 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46989 * 59.99555 * 5 2 1 9 9 C 1.42907 * 113.99712 * 180.02562 * 8 5 2 10 10 C 1.52992 * 109.46778 * 180.02562 * 9 8 5 11 11 O 1.42899 * 109.47542 * 65.00420 * 10 9 8 12 12 C 1.35894 * 117.00434 * 179.97438 * 11 10 9 13 13 C 1.38709 * 120.05744 * 359.97438 * 12 11 10 14 14 C 1.38159 * 119.94698 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.05581 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.94735 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47147 * 245.00352 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 4.99994 * 16 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 22 22 C 1.38293 * 120.11270 * 0.27563 * 15 14 13 23 23 C 1.38126 * 120.05159 * 359.45046 * 22 15 14 24 24 N 1.48002 * 120.02520 * 180.29946 * 23 22 15 25 25 O 1.21798 * 120.00044 * 0.24677 * 24 23 22 26 26 O 1.21801 * 119.99648 * 180.25377 * 24 23 22 27 27 H 1.09000 * 109.47392 * 299.99785 * 1 2 3 28 28 H 1.08996 * 109.47243 * 60.00075 * 1 2 3 29 29 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47185 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46784 * 300.00329 * 3 2 1 32 32 H 1.08997 * 109.47417 * 59.99932 * 3 2 1 33 33 H 1.09000 * 109.46926 * 299.99917 * 4 2 1 34 34 H 1.08996 * 109.47321 * 59.99790 * 4 2 1 35 35 H 1.09004 * 109.47420 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47329 * 179.97438 * 6 5 2 37 37 H 1.09001 * 109.46939 * 300.00407 * 6 5 2 38 38 H 1.08998 * 109.46948 * 59.99679 * 6 5 2 39 39 H 1.08993 * 109.46905 * 300.00251 * 7 5 2 40 40 H 1.09000 * 109.47105 * 59.99817 * 7 5 2 41 41 H 1.08996 * 109.47215 * 179.97438 * 7 5 2 42 42 H 1.09000 * 109.47005 * 60.00234 * 9 8 5 43 43 H 1.09000 * 109.46979 * 300.00517 * 9 8 5 44 44 H 1.08998 * 109.47556 * 304.99853 * 10 9 8 45 45 H 1.09005 * 109.46806 * 185.00432 * 10 9 8 46 46 H 1.08008 * 120.02343 * 359.97438 * 13 12 11 47 47 H 1.08008 * 119.97393 * 179.97438 * 14 13 12 48 48 H 1.09000 * 109.47318 * 124.99465 * 16 15 14 49 49 H 0.96700 * 113.99916 * 179.97438 * 17 16 15 50 50 H 1.08002 * 119.97160 * 179.70751 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 0.0000 3.0423 7 6 4.0141 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0286 -3.1814 2.6519 10 6 1.4638 -4.5994 2.5470 11 8 2.0330 -5.2562 1.4127 12 6 1.6345 -6.5335 1.1750 13 6 0.7150 -7.1423 2.0163 14 6 0.3118 -8.4412 1.7728 15 6 0.8237 -9.1338 0.6914 16 6 0.3826 -10.5507 0.4284 17 8 1.4956 -11.4330 0.5857 18 14 -0.9562 -11.0186 1.6364 19 1 -1.3913 -12.4145 1.3769 20 1 -0.4322 -10.9123 3.0219 21 1 -2.1129 -10.1017 1.4730 22 6 1.7445 -8.5309 -0.1459 23 6 2.1464 -7.2306 0.0900 24 7 3.1269 -6.5837 -0.8103 25 8 3.5762 -7.1963 -1.7623 26 8 3.4845 -5.4386 -0.5992 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2496 36 1 1.8931 -0.5141 3.9322 37 1 1.8934 1.0277 3.0422 38 1 0.4401 0.0000 3.0423 39 1 4.3769 -1.3929 0.6307 40 1 4.3778 0.1486 1.5204 41 1 4.3774 -1.3924 2.4108 42 1 1.6638 -2.7113 3.5652 43 1 3.1175 -3.2252 2.6758 44 1 0.3807 -4.5517 2.4336 45 1 1.7101 -5.1564 3.4510 46 1 0.3151 -6.6017 2.8615 47 1 -0.4038 -8.9158 2.4279 48 1 -0.0021 -10.6287 -0.5884 49 1 1.2844 -12.3639 0.4315 50 1 2.1464 -9.0757 -0.9873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29190_10264010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:04:01 Heat of formation + Delta-G solvation = -142.462487 kcal Electronic energy + Delta-G solvation = -30862.562010 eV Core-core repulsion = 26596.164785 eV Total energy + Delta-G solvation = -4266.397225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.94019 -41.46540 -39.70130 -38.02403 -37.42009 -37.06987 -36.78659 -33.45319 -32.39975 -30.89606 -29.37592 -29.05161 -27.81761 -27.54215 -27.33480 -26.70337 -24.94691 -23.06910 -22.50829 -20.38274 -20.25674 -19.42774 -19.06971 -18.69916 -18.34564 -18.08053 -17.68552 -16.81334 -16.59343 -16.17349 -16.11473 -15.81760 -15.68955 -15.48338 -14.83324 -14.82216 -14.69954 -14.50096 -14.08875 -14.01603 -13.75930 -13.55165 -13.42940 -13.24492 -13.21039 -12.92480 -12.86732 -12.83753 -12.74282 -12.37955 -12.31971 -12.26407 -12.17475 -12.02694 -11.86368 -11.75802 -11.71936 -11.66273 -11.53139 -11.34746 -10.80151 -10.60403 -10.36955 -10.03715 -9.73017 -1.02544 -0.22810 0.46168 0.60401 0.91506 1.21423 1.27845 1.42115 1.64950 1.67807 1.75608 2.04288 2.07370 2.43093 2.99911 3.16348 3.26774 3.53922 3.60208 3.69554 3.79937 3.83546 3.96334 4.09043 4.14887 4.17063 4.18257 4.28592 4.38715 4.45385 4.51714 4.57028 4.64357 4.67611 4.77584 4.81644 4.82165 4.84325 4.92478 5.04333 5.05220 5.15428 5.17962 5.18853 5.31809 5.38190 5.46725 5.52007 5.57524 5.59286 5.67612 5.89629 6.37329 6.99687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.617 6.617 9 C 0.088 3.912 10 C 0.047 3.953 11 O -0.266 6.266 12 C 0.205 3.795 13 C -0.209 4.209 14 C -0.030 4.030 15 C -0.116 4.116 16 C -0.079 4.079 17 O -0.544 6.544 18 Si 0.943 3.057 19 H -0.249 1.249 20 H -0.245 1.245 21 H -0.246 1.246 22 C 0.012 3.988 23 C -0.082 4.082 24 N 0.035 4.965 25 O -0.180 6.180 26 O -0.127 6.127 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.156 0.844 47 H 0.141 0.859 48 H 0.083 0.917 49 H 0.385 0.615 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -2.128 5.251 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.576 6.576 9 C 0.012 3.988 10 C -0.028 4.028 11 O -0.176 6.176 12 C 0.155 3.845 13 C -0.228 4.228 14 C -0.048 4.048 15 C -0.117 4.117 16 C -0.189 4.189 17 O -0.351 6.351 18 Si 0.765 3.235 19 H -0.173 1.173 20 H -0.168 1.168 21 H -0.170 1.170 22 C -0.007 4.007 23 C -0.166 4.166 24 N 0.554 4.446 25 O -0.389 6.389 26 O -0.350 6.350 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.174 0.826 47 H 0.159 0.841 48 H 0.101 0.899 49 H 0.233 0.767 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.746 -2.189 6.124 8.678 hybrid contribution 0.396 0.199 -0.378 0.583 sum -5.350 -1.990 5.746 8.099 Atomic orbital electron populations 1.21507 0.93989 1.01858 1.01688 1.25771 1.00508 1.02584 1.12882 1.21556 1.00863 0.94910 1.02037 1.21504 1.00862 1.00297 0.96447 0.76713 0.63281 0.53134 0.64926 1.27057 1.06930 1.09673 1.17723 1.27015 1.24794 1.04627 1.04826 1.85410 1.79081 1.46077 1.47062 1.22050 0.99761 0.89061 0.87929 1.23320 0.99547 0.92707 0.87203 1.86498 1.62881 1.21257 1.46976 1.18690 0.90386 0.84865 0.90586 1.21239 1.01871 0.96998 1.02735 1.21240 0.95859 0.93563 0.94161 1.19115 1.00299 0.95608 0.96712 1.24681 0.97568 0.88582 1.08059 1.86507 1.34130 1.20621 1.93809 0.85786 0.76728 0.81660 0.79346 1.17265 1.16839 1.16962 1.20775 0.91574 0.89887 0.98438 1.20545 1.03482 0.95852 0.96738 1.43271 1.00032 1.00884 1.00448 1.94553 1.58354 1.65340 1.20618 1.94616 1.61508 1.01371 1.77498 0.92818 0.92820 0.92296 0.92441 0.92526 0.92627 0.91998 0.92938 0.92486 0.91561 0.90592 0.90929 0.90344 0.90847 0.91582 0.90095 0.90955 0.89944 0.89896 0.82615 0.84144 0.89874 0.76682 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.06 7.85 37.15 0.29 0.23 16 2 C -0.37 -0.13 0.53 -90.62 -0.05 -0.18 16 3 C -0.14 0.02 7.85 37.16 0.29 0.31 16 4 C -0.13 -0.20 7.85 37.16 0.29 0.09 16 5 Si 1.29 -1.03 8.45 -169.99 -1.44 -2.46 16 6 C -0.51 0.64 8.50 101.05 0.86 1.49 16 7 C -0.51 -0.03 8.50 101.05 0.86 0.82 16 8 O -0.62 -0.25 8.52 -40.08 -0.34 -0.59 16 9 C 0.09 -0.16 5.51 37.15 0.20 0.05 16 10 C 0.05 -0.09 5.12 37.15 0.19 0.10 16 11 O -0.27 -0.53 8.12 -45.40 -0.37 -0.89 16 12 C 0.20 0.33 6.67 -39.22 -0.26 0.07 16 13 C -0.21 0.28 9.04 -39.44 -0.36 -0.08 16 14 C -0.03 0.04 8.66 -39.61 -0.34 -0.30 16 15 C -0.12 0.03 5.39 -104.60 -0.56 -0.53 16 16 C -0.08 0.18 2.79 36.01 0.10 0.28 16 17 O -0.54 0.77 12.81 -35.23 -0.45 0.32 16 18 Si 0.94 -2.70 25.13 -169.99 -4.27 -6.98 16 19 H -0.25 0.60 7.11 56.52 0.40 1.00 16 20 H -0.24 0.47 7.04 56.52 0.40 0.86 16 21 H -0.25 0.62 7.11 56.52 0.40 1.02 16 22 C 0.01 0.02 9.18 -39.60 -0.36 -0.35 16 23 C -0.08 -0.28 6.87 -79.81 -0.55 -0.82 16 24 N 0.03 0.21 4.45 34.03 0.15 0.37 16 25 O -0.18 -1.26 18.45 -29.46 -0.54 -1.80 16 26 O -0.13 -0.93 17.24 -36.49 -0.63 -1.56 16 27 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 28 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 30 H 0.06 -0.04 7.79 -51.93 -0.40 -0.44 16 31 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 33 H 0.06 0.14 7.97 -51.93 -0.41 -0.27 16 34 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 35 H 0.06 0.07 7.79 -51.93 -0.40 -0.34 16 36 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 37 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.08 0.09 7.79 -51.93 -0.40 -0.31 16 40 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 41 H 0.06 -0.03 7.48 -51.93 -0.39 -0.42 16 42 H 0.08 -0.37 7.21 -51.93 -0.37 -0.75 16 43 H 0.07 -0.15 7.21 -51.93 -0.37 -0.53 16 44 H 0.08 -0.27 7.66 -51.93 -0.40 -0.67 16 45 H 0.08 -0.40 7.66 -51.93 -0.40 -0.79 16 46 H 0.16 -0.70 6.30 -52.48 -0.33 -1.03 16 47 H 0.14 -0.50 4.86 -52.48 -0.25 -0.76 16 48 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 49 H 0.39 -2.22 8.74 45.56 0.40 -1.82 16 50 H 0.16 0.15 7.61 -52.49 -0.40 -0.25 16 LS Contribution 407.59 15.07 6.14 6.14 Total: 0.00 -8.21 407.59 -8.60 -16.81 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: -7.45 Total: -10.55 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 0.60 Total: 1.20 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: 0.15 Total: 0.37 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: -2.33 Total: -4.53 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: -5.71 Total: -9.44 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -8.21 -8.60 -16.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_10264010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.650 kcal (2) G-P(sol) polarization free energy of solvation -8.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds