Wall clock time and date at job start Tue Mar 9 2021 18:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46707 * 2 1 4 4 C 1.52996 * 109.47356 * 240.00245 * 2 1 3 5 5 Si 1.86299 * 109.47315 * 119.99752 * 2 1 3 6 6 C 1.86296 * 109.47332 * 300.00283 * 5 2 1 7 7 C 1.86304 * 109.47087 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47010 * 60.00432 * 5 2 1 9 9 C 1.42904 * 114.00164 * 180.02562 * 8 5 2 10 10 O 1.42899 * 109.47036 * 180.02562 * 9 8 5 11 11 C 1.35894 * 117.00434 * 74.99905 * 10 9 8 12 12 C 1.38709 * 120.05744 * 359.97438 * 11 10 9 13 13 C 1.38159 * 119.94698 * 180.02562 * 12 11 10 14 14 C 1.38241 * 120.05581 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.94735 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47147 * 245.00352 * 15 14 13 17 17 Si 1.86299 * 109.46748 * 4.99994 * 15 14 13 18 18 H 1.48503 * 109.47188 * 60.00070 * 17 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47505 * 299.99883 * 17 15 14 21 21 C 1.38293 * 120.11270 * 0.27563 * 14 13 12 22 22 C 1.38126 * 120.05159 * 359.45046 * 21 14 13 23 23 N 1.48002 * 120.02520 * 180.29946 * 22 21 14 24 24 O 1.21798 * 120.00044 * 0.24677 * 23 22 21 25 25 O 1.21801 * 119.99648 * 180.25377 * 23 22 21 26 26 H 1.08999 * 109.47515 * 300.00027 * 1 2 3 27 27 H 1.08999 * 109.47402 * 60.00591 * 1 2 3 28 28 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46915 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47155 * 299.99586 * 3 2 1 31 31 H 1.08991 * 109.47486 * 60.00536 * 3 2 1 32 32 H 1.09008 * 109.47111 * 299.99360 * 4 2 1 33 33 H 1.09002 * 109.47526 * 59.99789 * 4 2 1 34 34 H 1.09005 * 109.47506 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47547 * 179.97438 * 6 5 2 36 36 H 1.09004 * 109.46830 * 300.00154 * 6 5 2 37 37 H 1.08998 * 109.47399 * 59.99566 * 6 5 2 38 38 H 1.08999 * 109.47544 * 300.00098 * 7 5 2 39 39 H 1.09002 * 109.47368 * 60.00288 * 7 5 2 40 40 H 1.09002 * 109.46746 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.47250 * 59.99562 * 9 8 5 42 42 H 1.09000 * 109.46746 * 299.99400 * 9 8 5 43 43 H 1.08008 * 120.02343 * 359.97438 * 12 11 10 44 44 H 1.08008 * 119.97393 * 179.97438 * 13 12 11 45 45 H 1.09000 * 109.47318 * 124.99465 * 15 14 13 46 46 H 0.96695 * 114.00385 * 59.99326 * 16 15 14 47 47 H 1.08002 * 119.97160 * 179.70751 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8781 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8774 1.5215 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6520 10 8 1.5012 -4.5057 2.5539 11 6 2.0900 -5.3395 1.6568 12 6 3.1532 -4.8921 0.8864 13 6 3.7498 -5.7415 -0.0254 14 6 3.2884 -7.0366 -0.1699 15 6 3.9406 -7.9610 -1.1656 16 8 3.0036 -8.2930 -2.1921 17 14 5.4177 -7.1151 -1.9230 18 1 6.3914 -6.7700 -0.8563 19 1 6.0608 -8.0261 -2.9037 20 1 4.9786 -5.8753 -2.6124 21 6 2.2253 -7.4836 0.5933 22 6 1.6291 -6.6400 1.5103 23 7 0.4956 -7.1211 2.3315 24 8 0.0911 -8.2626 2.2020 25 8 -0.0327 -6.3753 3.1366 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.8930 -0.5140 3.9323 36 1 1.8933 1.0277 3.0422 37 1 0.4400 0.0001 3.0423 38 1 4.3778 -1.3910 0.6315 39 1 4.3770 0.1504 1.5217 40 1 4.3773 -1.3908 2.4117 41 1 1.6638 -2.7112 3.5653 42 1 3.1175 -3.2251 2.6758 43 1 3.5137 -3.8802 0.9986 44 1 4.5774 -5.3935 -0.6258 45 1 4.2630 -8.8710 -0.6596 46 1 2.6734 -7.5296 -2.6851 47 1 1.8636 -8.4944 0.4752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29190_14468166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:04:22 Heat of formation + Delta-G solvation = -142.355791 kcal Electronic energy + Delta-G solvation = -29376.769208 eV Core-core repulsion = 25265.914228 eV Total energy + Delta-G solvation = -4110.854980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.03400 -41.63686 -39.93557 -37.84989 -37.30555 -37.03656 -36.96064 -33.36281 -32.28874 -29.77184 -29.33865 -28.05252 -27.92188 -27.59913 -27.57613 -26.33490 -23.79655 -22.78106 -20.69952 -20.42116 -19.49992 -19.33051 -18.75315 -18.48146 -18.22920 -17.78867 -16.61419 -16.57595 -16.43843 -16.13718 -15.78651 -15.54488 -15.28699 -15.07547 -14.95978 -14.77112 -14.38027 -14.13142 -14.08732 -13.79311 -13.69356 -13.50614 -13.36456 -13.13629 -13.10163 -13.06760 -12.58846 -12.52528 -12.35696 -12.26960 -12.24438 -12.13140 -11.93971 -11.86552 -11.80348 -11.79849 -11.71283 -10.87906 -10.73381 -10.71705 -10.31984 -9.87845 -1.10665 -0.31384 0.38640 0.52083 0.89926 0.93206 1.19646 1.27014 1.38853 1.66664 1.70460 1.73023 2.00041 2.13389 3.03835 3.13626 3.22284 3.29499 3.44737 3.57634 3.70561 3.78354 3.93082 3.93389 4.19772 4.25940 4.27104 4.36351 4.37967 4.40068 4.47925 4.48520 4.52125 4.63055 4.69047 4.70480 4.75822 4.82410 4.92995 4.94559 4.98878 5.04143 5.15578 5.22441 5.28101 5.32597 5.39451 5.45751 5.73211 6.32546 6.91000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.371 4.371 3 C -0.138 4.138 4 C -0.135 4.135 5 Si 1.290 2.710 6 C -0.513 4.513 7 C -0.516 4.516 8 O -0.646 6.646 9 C 0.242 3.758 10 O -0.264 6.264 11 C 0.206 3.794 12 C -0.195 4.195 13 C -0.037 4.037 14 C -0.157 4.157 15 C -0.077 4.077 16 O -0.534 6.534 17 Si 0.945 3.055 18 H -0.247 1.247 19 H -0.245 1.245 20 H -0.248 1.248 21 C 0.009 3.991 22 C -0.078 4.078 23 N 0.034 4.966 24 O -0.172 6.172 25 O -0.133 6.133 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.155 0.845 44 H 0.142 0.858 45 H 0.125 0.875 46 H 0.378 0.622 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 4.775 -1.744 7.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.416 4.416 3 C -0.195 4.195 4 C -0.193 4.193 5 Si 1.423 2.577 6 C -0.615 4.615 7 C -0.618 4.618 8 O -0.606 6.606 9 C 0.129 3.871 10 O -0.175 6.175 11 C 0.157 3.843 12 C -0.214 4.214 13 C -0.055 4.055 14 C -0.159 4.159 15 C -0.187 4.187 16 O -0.339 6.339 17 Si 0.766 3.234 18 H -0.170 1.170 19 H -0.169 1.169 20 H -0.172 1.172 21 C -0.010 4.010 22 C -0.162 4.162 23 N 0.553 4.447 24 O -0.383 6.383 25 O -0.355 6.355 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.140 0.860 42 H 0.086 0.914 43 H 0.173 0.827 44 H 0.159 0.841 45 H 0.143 0.857 46 H 0.226 0.774 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.063 4.550 -2.309 8.713 hybrid contribution -0.457 0.922 0.295 1.071 sum 6.606 5.472 -2.014 8.811 Atomic orbital electron populations 1.21526 0.93531 1.02168 1.02072 1.25745 1.00928 1.02689 1.12202 1.21565 1.00762 0.94711 1.02433 1.21532 1.00521 1.00221 0.96976 0.76614 0.62967 0.52160 0.65916 1.27022 1.07574 1.09831 1.17123 1.27073 1.24566 1.05629 1.04526 1.85330 1.80055 1.46820 1.48352 1.23682 0.96445 0.77888 0.89044 1.86618 1.56837 1.21685 1.52349 1.18652 0.89857 0.87595 0.88212 1.21274 0.97903 1.02382 0.99863 1.21315 0.97166 0.92260 0.94734 1.20262 0.98742 0.95509 1.01343 1.24998 1.00207 1.03619 0.89917 1.86568 1.62274 1.36694 1.48363 0.85758 0.76798 0.79681 0.81149 1.17006 1.16864 1.17160 1.20815 0.91554 1.00154 0.88478 1.20599 0.97233 0.94192 1.04189 1.43288 1.00763 1.00577 1.00052 1.94563 1.66479 1.03781 1.73471 1.94606 1.57741 1.53494 1.29624 0.92501 0.92573 0.92134 0.92463 0.92267 0.92355 0.92287 0.92516 0.92677 0.91278 0.90207 0.90344 0.90687 0.89902 0.91296 0.86023 0.91365 0.82743 0.84083 0.85698 0.77427 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 7.85 37.15 0.29 0.42 16 2 C -0.37 0.71 0.53 -90.62 -0.05 0.66 16 3 C -0.14 0.30 7.85 37.16 0.29 0.60 16 4 C -0.14 0.22 7.85 37.16 0.29 0.52 16 5 Si 1.29 -4.17 8.45 -169.99 -1.44 -5.60 16 6 C -0.51 1.38 8.50 101.05 0.86 2.24 16 7 C -0.52 1.93 8.50 101.05 0.86 2.79 16 8 O -0.65 0.92 8.03 -59.04 -0.47 0.44 16 9 C 0.24 -0.48 5.42 101.05 0.55 0.07 16 10 O -0.26 -0.44 8.41 -51.12 -0.43 -0.87 16 11 C 0.21 0.27 6.61 -39.22 -0.26 0.01 16 12 C -0.20 0.27 8.78 -39.44 -0.35 -0.07 16 13 C -0.04 0.08 8.66 -39.61 -0.34 -0.26 16 14 C -0.16 0.23 5.35 -104.60 -0.56 -0.33 16 15 C -0.08 0.19 2.80 36.01 0.10 0.29 16 16 O -0.53 0.74 12.83 -35.23 -0.45 0.29 16 17 Si 0.94 -2.77 25.13 -169.99 -4.27 -7.04 16 18 H -0.25 0.66 7.11 56.52 0.40 1.06 16 19 H -0.25 0.27 7.11 56.52 0.40 0.68 16 20 H -0.25 0.78 7.04 56.52 0.40 1.18 16 21 C 0.01 0.00 9.18 -39.60 -0.36 -0.36 16 22 C -0.08 -0.21 6.87 -79.81 -0.55 -0.76 16 23 N 0.03 0.19 4.45 34.03 0.15 0.34 16 24 O -0.17 -1.11 18.45 -29.46 -0.54 -1.65 16 25 O -0.13 -0.91 17.24 -36.49 -0.63 -1.54 16 26 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 27 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.06 -0.02 7.97 -51.93 -0.41 -0.43 16 29 H 0.06 -0.17 7.79 -51.93 -0.40 -0.58 16 30 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 31 H 0.06 -0.16 7.79 -51.93 -0.40 -0.56 16 32 H 0.06 -0.08 7.97 -51.92 -0.41 -0.49 16 33 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.05 -0.15 7.80 -51.93 -0.40 -0.55 16 35 H 0.07 -0.23 7.48 -51.93 -0.39 -0.62 16 36 H 0.08 -0.23 7.79 -51.93 -0.40 -0.64 16 37 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 38 H 0.07 -0.29 7.79 -51.93 -0.40 -0.70 16 39 H 0.08 -0.31 7.79 -51.93 -0.40 -0.71 16 40 H 0.07 -0.31 7.48 -51.93 -0.39 -0.69 16 41 H 0.12 -0.51 7.21 -51.93 -0.37 -0.88 16 42 H 0.07 -0.33 5.77 -51.93 -0.30 -0.63 16 43 H 0.16 -0.57 5.86 -52.48 -0.31 -0.88 16 44 H 0.14 -0.62 4.86 -52.48 -0.25 -0.87 16 45 H 0.13 -0.42 7.96 -51.93 -0.41 -0.84 16 46 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 47 H 0.17 0.02 7.61 -52.49 -0.40 -0.38 16 LS Contribution 384.63 15.07 5.80 5.80 Total: 0.00 -7.32 384.63 -8.08 -15.40 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: -6.56 Total: -11.37 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 0.77 Total: 5.82 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: 0.15 Total: 0.34 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: -2.53 Total: -3.34 kcal Atomic # 14 Polarization: -6.93 SS G_CDS: -5.71 Total: -12.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -7.32 -8.08 -15.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_14468166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.959 kcal (2) G-P(sol) polarization free energy of solvation -7.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds