Wall clock time and date at job start Tue Mar 9 2021 18:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86300 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47077 * 239.99673 * 2 1 3 5 5 C 1.38240 * 119.94377 * 120.00369 * 4 2 1 6 6 C 1.38165 * 120.05889 * 179.97438 * 5 4 2 7 7 C 1.38711 * 119.94205 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05766 * 179.97438 * 7 6 5 9 9 C 1.42897 * 116.99503 * 0.02562 * 8 7 6 10 10 C 1.53007 * 109.47073 * 180.02562 * 9 8 7 11 11 H 1.08995 * 109.46931 * 54.99589 * 10 9 8 12 12 C 1.52995 * 109.47389 * 175.00287 * 10 9 8 13 13 C 1.53003 * 109.47046 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46994 * 299.99951 * 13 12 10 15 15 H 1.09008 * 109.46700 * 300.00003 * 14 13 12 16 16 O 1.42898 * 109.47078 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47512 * 59.99943 * 14 13 12 18 18 C 1.53001 * 109.46847 * 295.00358 * 10 9 8 19 19 C 1.38756 * 119.88834 * 359.97438 * 7 6 5 20 20 N 1.48007 * 120.02650 * 180.02562 * 19 7 6 21 21 O 1.21803 * 119.99745 * 180.02562 * 20 19 7 22 22 O 1.21799 * 120.00052 * 359.73074 * 20 19 7 23 23 C 1.38120 * 119.94548 * 0.27816 * 19 7 6 24 24 H 0.96700 * 113.99818 * 59.99993 * 1 2 3 25 25 H 1.09003 * 109.47006 * 119.99436 * 2 1 3 26 26 H 1.48496 * 110.00473 * 60.00093 * 3 2 1 27 27 H 1.48506 * 109.99834 * 181.31739 * 3 2 1 28 28 H 1.08004 * 119.97175 * 0.02562 * 5 4 2 29 29 H 1.07996 * 120.03052 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47821 * 300.00083 * 9 8 7 31 31 H 1.08999 * 109.47393 * 60.00506 * 9 8 7 32 32 H 1.09001 * 109.46842 * 299.99518 * 12 10 9 33 33 H 1.08999 * 109.46979 * 59.99981 * 12 10 9 34 34 H 1.08991 * 109.47414 * 59.99813 * 13 12 10 35 35 H 1.09000 * 109.47109 * 179.97438 * 13 12 10 36 36 H 0.96699 * 113.99911 * 179.97438 * 16 14 13 37 37 H 1.08999 * 109.46661 * 59.99878 * 17 14 13 38 38 H 1.08993 * 109.47286 * 180.02562 * 17 14 13 39 39 H 1.08999 * 109.47257 * 299.99857 * 18 10 9 40 40 H 1.09000 * 109.47228 * 59.99700 * 18 10 9 41 41 H 1.07995 * 119.97576 * 179.70081 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7261 -0.0376 -2.1396 6 6 3.1884 -0.6868 -3.2682 7 6 2.8540 -2.0148 -3.4888 8 8 3.3070 -2.6555 -4.5984 9 6 4.1239 -1.9005 -5.4953 10 6 4.5345 -2.7824 -6.6764 11 1 3.6433 -3.1986 -7.1460 12 6 5.3038 -1.9419 -7.6973 13 6 5.7138 -2.8237 -8.8786 14 6 6.6057 -3.9623 -8.3796 15 1 7.4972 -3.5464 -7.9100 16 8 6.9890 -4.7855 -9.4829 17 6 5.8364 -4.8028 -7.3586 18 6 5.4266 -3.9206 -6.1769 19 6 2.0561 -2.6880 -2.5747 20 7 1.6979 -4.1051 -2.8068 21 8 0.9971 -4.6954 -2.0043 22 8 2.0994 -4.6795 -3.8030 23 6 1.5922 -2.0329 -1.4507 24 1 -0.3933 0.4417 -0.7651 25 1 1.7924 -0.5138 0.8901 26 1 1.5616 2.4680 1.2084 27 1 3.5347 1.7703 -0.0321 28 1 2.9866 0.9963 -1.9671 29 1 3.8089 -0.1606 -3.9784 30 1 3.5627 -1.0410 -5.8620 31 1 5.0156 -1.5556 -4.9718 32 1 4.6682 -1.1310 -8.0532 33 1 6.1950 -1.5257 -7.2276 34 1 4.8224 -3.2395 -9.3482 35 1 6.2615 -2.2247 -9.6062 36 1 7.5573 -5.5293 -9.2399 37 1 4.9450 -5.2186 -7.8282 38 1 6.4720 -5.6137 -7.0028 39 1 6.3178 -3.5045 -5.7072 40 1 4.8785 -4.5194 -5.4495 41 1 0.9672 -2.5550 -0.7414 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_16737254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:04:38 Heat of formation + Delta-G solvation = -103.755455 kcal Electronic energy + Delta-G solvation = -26100.834265 eV Core-core repulsion = 22143.633703 eV Total energy + Delta-G solvation = -3957.200562 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.29638 -41.62631 -40.26660 -39.35247 -37.61098 -37.47981 -36.65682 -33.48522 -32.39122 -31.80369 -31.52100 -27.82630 -27.29475 -26.22009 -23.96219 -23.78404 -22.84950 -22.08274 -20.93737 -20.32268 -19.78807 -19.05492 -18.64709 -18.22160 -18.17830 -17.36523 -17.20323 -16.40904 -16.31339 -16.12094 -15.67019 -15.47895 -15.20880 -14.88944 -14.66264 -14.38076 -13.95613 -13.76866 -13.59582 -13.42638 -13.19024 -13.01944 -12.71024 -12.64591 -12.29783 -12.26375 -12.20139 -12.15657 -12.02035 -11.96263 -11.61098 -11.57374 -11.08769 -10.83034 -10.71367 -10.57745 -9.73662 -5.01795 -1.28891 -0.21991 0.17352 0.35202 1.24941 1.61682 1.68738 1.99709 2.06043 3.11896 3.21655 3.32738 3.38657 3.52544 3.64370 3.69625 3.70817 3.78980 3.82273 4.06353 4.14267 4.21111 4.31092 4.33368 4.35625 4.36529 4.48460 4.51083 4.53593 4.58359 4.66180 4.82594 4.84247 4.98923 5.07274 5.08997 5.09818 5.16868 5.20026 5.24109 5.35334 5.44932 5.92951 6.44961 6.71585 6.84894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.079 4.079 3 Si 0.795 3.205 4 C -0.153 4.153 5 C -0.007 4.007 6 C -0.194 4.194 7 C 0.198 3.802 8 O -0.299 6.299 9 C 0.047 3.953 10 C -0.084 4.084 11 H 0.071 0.929 12 C -0.100 4.100 13 C -0.115 4.115 14 C 0.101 3.899 15 H 0.066 0.934 16 O -0.592 6.592 17 C -0.149 4.149 18 C -0.110 4.110 19 C -0.107 4.107 20 N 0.038 4.962 21 O -0.216 6.216 22 O -0.160 6.160 23 C -0.004 4.004 24 H 0.398 0.602 25 H 0.110 0.890 26 H -0.304 1.304 27 H -0.267 1.267 28 H 0.183 0.817 29 H 0.195 0.805 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.392 0.608 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 10.538 -1.746 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.188 4.188 3 Si 0.699 3.301 4 C -0.155 4.155 5 C -0.025 4.025 6 C -0.213 4.213 7 C 0.148 3.852 8 O -0.210 6.210 9 C -0.027 4.027 10 C -0.103 4.103 11 H 0.089 0.911 12 C -0.137 4.137 13 C -0.153 4.153 14 C 0.043 3.957 15 H 0.084 0.916 16 O -0.400 6.400 17 C -0.187 4.187 18 C -0.148 4.148 19 C -0.192 4.192 20 N 0.549 4.451 21 O -0.419 6.419 22 O -0.379 6.379 23 C -0.023 4.023 24 H 0.248 0.752 25 H 0.127 0.873 26 H -0.232 1.232 27 H -0.193 1.193 28 H 0.200 0.800 29 H 0.212 0.788 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.555 11.651 -1.046 12.553 hybrid contribution 0.004 -2.175 0.627 2.263 sum 4.559 9.476 -0.419 10.524 Atomic orbital electron populations 1.86525 1.17196 1.82195 1.50625 1.25415 0.85480 1.11827 0.96052 0.93789 0.77954 0.72940 0.85447 1.20405 1.02303 0.92910 0.99855 1.21675 0.89718 1.01029 0.90045 1.21731 1.06196 0.91182 1.02155 1.18927 0.89116 0.91722 0.85420 1.86413 1.63718 1.40801 1.30023 1.23480 0.94654 0.95068 0.89498 1.21188 0.99084 0.95887 0.94148 0.91089 1.21431 1.00940 0.97363 0.93957 1.21486 0.99294 0.95955 0.98540 1.21941 0.96677 0.90908 0.86183 0.91625 1.86479 1.72485 1.45012 1.36048 1.22229 1.00867 0.98893 0.96668 1.21500 0.99559 0.96668 0.97063 1.20816 1.13565 0.81639 1.03204 1.43772 0.98164 1.03799 0.99389 1.94534 1.36547 1.68280 1.42541 1.94564 1.55984 1.69256 1.18057 1.20819 0.94178 0.94650 0.92674 0.75212 0.87264 1.23192 1.19302 0.79982 0.78818 0.88292 0.88696 0.89173 0.89579 0.92399 0.90890 0.75825 0.92568 0.91242 0.90637 0.92518 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.80 12.76 -148.98 -1.90 -0.10 16 2 C -0.08 0.44 2.82 71.23 0.20 0.64 16 3 Si 0.79 -7.35 29.78 68.60 2.04 -5.31 16 4 C -0.15 0.78 5.39 -19.85 -0.11 0.67 16 5 C -0.01 0.08 8.66 22.25 0.19 0.27 16 6 C -0.19 1.77 9.04 22.37 0.20 1.97 16 7 C 0.20 -0.03 6.67 22.51 0.15 0.12 16 8 O -0.30 -0.34 7.69 -71.29 -0.55 -0.89 16 9 C 0.05 -0.35 4.12 71.98 0.30 -0.06 16 10 C -0.08 0.39 2.43 -10.79 -0.03 0.37 16 11 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 12 C -0.10 0.77 5.20 30.59 0.16 0.93 16 13 C -0.12 0.26 5.57 30.60 0.17 0.43 16 14 C 0.10 -0.11 3.47 30.59 0.11 -0.01 16 15 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 16 O -0.59 -1.41 13.32 -148.98 -1.98 -3.40 16 17 C -0.15 0.08 5.55 30.61 0.17 0.25 16 18 C -0.11 0.20 5.10 30.61 0.16 0.36 16 19 C -0.11 -0.61 6.87 36.47 0.25 -0.36 16 20 N 0.04 0.53 4.45 -46.24 -0.21 0.32 16 21 O -0.22 -3.61 18.45 18.88 0.35 -3.26 16 22 O -0.16 -2.57 17.24 25.61 0.44 -2.13 16 23 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 24 H 0.40 -4.70 8.70 -74.06 -0.64 -5.35 16 25 H 0.11 -0.41 7.96 -2.39 -0.02 -0.43 16 26 H -0.30 -0.07 7.11 99.48 0.71 0.64 16 27 H -0.27 1.83 7.11 99.48 0.71 2.53 16 28 H 0.18 -3.16 4.87 -2.91 -0.01 -3.17 16 29 H 0.19 -3.26 6.30 -2.91 -0.02 -3.28 16 30 H 0.10 -1.25 7.66 -2.39 -0.02 -1.26 16 31 H 0.09 -1.15 7.66 -2.39 -0.02 -1.17 16 32 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.39 -1.96 9.08 -74.06 -0.67 -2.64 16 37 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.06 0.18 7.82 -2.39 -0.02 0.16 16 41 H 0.15 0.56 7.61 -2.91 -0.02 0.54 16 Total: 0.00 -25.18 338.86 0.11 -25.07 By element: Atomic # 1 Polarization: -15.87 SS G_CDS: -0.21 Total: -16.08 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 2.12 Total: 5.78 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -0.21 Total: 0.32 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -3.64 Total: -9.78 kcal Atomic # 14 Polarization: -7.35 SS G_CDS: 2.04 Total: -5.31 kcal Total: -25.18 0.11 -25.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_16737254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.689 kcal (2) G-P(sol) polarization free energy of solvation -25.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds