Wall clock time and date at job start Tue Mar 9 2021 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47414 * 239.99901 * 2 1 3 5 5 Si 1.86300 * 109.47205 * 120.00020 * 2 1 3 6 6 C 1.86305 * 109.47005 * 299.99913 * 5 2 1 7 7 C 1.86302 * 109.47315 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47124 * 59.99907 * 5 2 1 9 9 C 1.42902 * 113.99942 * 180.02562 * 8 5 2 10 10 C 1.53002 * 109.47046 * 180.02562 * 9 8 5 11 11 C 1.52992 * 109.47162 * 180.02562 * 10 9 8 12 12 O 1.42899 * 109.47542 * 180.02562 * 11 10 9 13 13 C 1.35894 * 117.00434 * 179.97438 * 12 11 10 14 14 C 1.38709 * 120.05744 * 359.97438 * 13 12 11 15 15 C 1.38159 * 119.94698 * 180.02562 * 14 13 12 16 16 C 1.38241 * 120.05581 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.94735 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47147 * 245.00352 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 4.99994 * 17 16 15 20 20 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 21 21 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 23 23 C 1.38293 * 120.11270 * 0.27563 * 16 15 14 24 24 C 1.38126 * 120.05159 * 359.45046 * 23 16 15 25 25 N 1.48002 * 120.02520 * 180.29946 * 24 23 16 26 26 O 1.21798 * 120.00044 * 0.24677 * 25 24 23 27 27 O 1.21801 * 119.99648 * 180.25377 * 25 24 23 28 28 H 1.08997 * 109.47186 * 300.00351 * 1 2 3 29 29 H 1.09007 * 109.46624 * 59.99824 * 1 2 3 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47447 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47377 * 300.00247 * 3 2 1 33 33 H 1.08997 * 109.47278 * 59.99706 * 3 2 1 34 34 H 1.08996 * 109.47331 * 300.00333 * 4 2 1 35 35 H 1.09008 * 109.47293 * 60.00055 * 4 2 1 36 36 H 1.08997 * 109.47595 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47217 * 179.97438 * 6 5 2 38 38 H 1.09001 * 109.47281 * 300.00185 * 6 5 2 39 39 H 1.09001 * 109.46834 * 60.00015 * 6 5 2 40 40 H 1.09000 * 109.46854 * 300.00108 * 7 5 2 41 41 H 1.09001 * 109.46970 * 59.99815 * 7 5 2 42 42 H 1.08999 * 109.47009 * 179.97438 * 7 5 2 43 43 H 1.09003 * 109.46817 * 59.99974 * 9 8 5 44 44 H 1.08992 * 109.47175 * 299.99966 * 9 8 5 45 45 H 1.08998 * 109.47274 * 59.99526 * 10 9 8 46 46 H 1.09003 * 109.46629 * 300.00149 * 10 9 8 47 47 H 1.08998 * 109.47556 * 59.99523 * 11 10 9 48 48 H 1.09005 * 109.46806 * 300.00102 * 11 10 9 49 49 H 1.08008 * 120.02343 * 359.97438 * 14 13 12 50 50 H 1.08008 * 119.97393 * 179.97438 * 15 14 13 51 51 H 1.09000 * 109.47318 * 124.99465 * 17 16 15 52 52 H 0.96695 * 114.00385 * 59.99326 * 18 17 16 53 53 H 1.08002 * 119.97160 * 179.70751 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0141 -0.8776 1.5215 8 8 1.6074 -2.4159 1.5211 9 6 2.0286 -3.1813 2.6520 10 6 1.4638 -4.5994 2.5470 11 6 1.9142 -5.4187 3.7581 12 8 1.3872 -6.7433 3.6598 13 6 1.6961 -7.6063 4.6631 14 6 2.4904 -7.1870 5.7202 15 6 2.8035 -8.0664 6.7387 16 6 2.3253 -9.3631 6.7053 17 6 2.6688 -10.3205 7.8174 18 8 3.4723 -11.3829 7.3001 19 14 3.6136 -9.4170 9.1448 20 1 2.7785 -8.3129 9.6824 21 1 3.9515 -10.3602 10.2409 22 1 4.8632 -8.8577 8.5696 23 6 1.5375 -9.7851 5.6500 24 6 1.2170 -8.9081 4.6321 25 7 0.3683 -9.3585 3.5064 26 8 -0.0516 -10.5015 3.4795 27 8 0.0898 -8.5860 2.6067 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.8930 -0.5140 3.9323 38 1 1.8933 1.0277 3.0423 39 1 0.4400 0.0000 3.0423 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5218 42 1 4.3774 -1.3910 2.4118 43 1 1.6637 -2.7111 3.5652 44 1 3.1174 -3.2252 2.6759 45 1 1.8289 -5.0693 1.6338 46 1 0.3749 -4.5558 2.5229 47 1 1.5487 -4.9486 4.6711 48 1 3.0031 -5.4621 3.7826 49 1 2.8646 -6.1742 5.7465 50 1 3.4223 -7.7406 7.5618 51 1 1.7516 -10.7310 8.2397 52 1 4.3063 -11.0902 6.9078 53 1 1.1690 -10.8000 5.6239 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29190_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:09:38 Heat of formation + Delta-G solvation = -151.385423 kcal Electronic energy + Delta-G solvation = -31751.190443 eV Core-core repulsion = 27328.868671 eV Total energy + Delta-G solvation = -4422.321772 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.04642 -41.59294 -39.84597 -38.39358 -37.56079 -37.20011 -36.88770 -34.07141 -33.15316 -32.12173 -29.53891 -29.17283 -27.92760 -27.69397 -27.47698 -27.44639 -26.37319 -24.13594 -22.82732 -22.54036 -20.50967 -20.32536 -19.50158 -19.24073 -18.47022 -18.38412 -17.92766 -17.71785 -17.22661 -16.60070 -16.42677 -16.30270 -16.07104 -15.85127 -15.55275 -15.33713 -14.93365 -14.86177 -14.66485 -14.51761 -14.11779 -14.07536 -13.71877 -13.56216 -13.49755 -13.38049 -13.20654 -13.11646 -12.98223 -12.97873 -12.60225 -12.53349 -12.45805 -12.38270 -12.26943 -12.19853 -11.96717 -11.86999 -11.81750 -11.79436 -11.76374 -11.53821 -11.43537 -10.91570 -10.74490 -10.47329 -10.14180 -9.87209 -1.14023 -0.34809 0.35522 0.50040 0.88585 1.16915 1.17477 1.25111 1.62677 1.67842 1.69264 1.94771 1.95500 2.34713 2.99969 3.07542 3.21500 3.30952 3.51311 3.58475 3.64543 3.71942 3.84985 4.01340 4.02282 4.07090 4.07192 4.15009 4.19777 4.22951 4.36063 4.41741 4.47137 4.56082 4.59816 4.62139 4.63188 4.68400 4.76048 4.81162 4.86669 4.88452 4.95349 4.98652 5.06232 5.06262 5.14548 5.28869 5.33416 5.35763 5.45089 5.46094 5.49186 5.51664 5.78107 6.29751 6.89077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.621 6.621 9 C 0.091 3.909 10 C -0.124 4.124 11 C 0.050 3.950 12 O -0.275 6.275 13 C 0.204 3.796 14 C -0.208 4.208 15 C -0.033 4.033 16 C -0.160 4.160 17 C -0.078 4.078 18 O -0.534 6.534 19 Si 0.947 3.053 20 H -0.247 1.247 21 H -0.246 1.246 22 H -0.249 1.249 23 C 0.012 3.988 24 C -0.080 4.080 25 N 0.033 4.967 26 O -0.174 6.174 27 O -0.132 6.132 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.156 0.844 50 H 0.142 0.858 51 H 0.125 0.875 52 H 0.378 0.622 53 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 4.468 5.130 8.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.581 6.581 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.025 4.025 12 O -0.185 6.185 13 C 0.155 3.845 14 C -0.227 4.227 15 C -0.051 4.051 16 C -0.161 4.161 17 C -0.188 4.188 18 O -0.339 6.339 19 Si 0.769 3.231 20 H -0.170 1.170 21 H -0.169 1.169 22 H -0.173 1.173 23 C -0.007 4.007 24 C -0.165 4.165 25 N 0.553 4.447 26 O -0.384 6.384 27 O -0.353 6.353 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.173 0.827 50 H 0.159 0.841 51 H 0.143 0.857 52 H 0.225 0.775 53 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.814 4.518 6.211 9.065 hybrid contribution 0.327 0.698 -0.604 0.979 sum 5.141 5.216 5.607 9.224 Atomic orbital electron populations 1.21518 0.93739 1.02100 1.01824 1.25785 1.00758 1.02621 1.12688 1.21558 1.00746 0.94907 1.02186 1.21517 1.00570 1.00324 0.96771 0.76701 0.62977 0.53275 0.65085 1.27038 1.07112 1.09546 1.17626 1.27037 1.25040 1.04810 1.04432 1.85341 1.79314 1.46077 1.47330 1.21778 0.98045 0.91400 0.87297 1.21524 1.03920 0.93002 0.97678 1.22996 0.98994 0.79961 1.00562 1.86416 1.68961 1.22123 1.41001 1.18665 0.90409 0.87694 0.87781 1.21274 1.03837 1.02554 0.95071 1.21319 0.94529 0.92301 0.96956 1.20264 1.01860 0.95578 0.98442 1.25005 1.01305 0.93006 0.99474 1.86573 1.34918 1.32061 1.80351 0.85716 0.79732 0.79331 0.78327 1.17050 1.16895 1.17261 1.20833 0.91371 0.99795 0.88706 1.20601 1.07673 0.93946 0.94283 1.43293 0.99559 1.00607 1.01286 1.94565 1.55696 1.04039 1.84083 1.94614 1.60615 1.51265 1.28812 0.92719 0.92735 0.92072 0.92532 0.92444 0.92536 0.92076 0.92730 0.92723 0.91576 0.90640 0.90788 0.90785 0.90642 0.91575 0.92376 0.92388 0.89071 0.89075 0.90836 0.90859 0.82665 0.84062 0.85715 0.77458 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.32 16 2 C -0.37 0.27 0.53 -90.62 -0.05 0.22 16 3 C -0.14 0.14 7.85 37.16 0.29 0.44 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.44 8.45 -169.99 -1.44 -3.88 16 6 C -0.51 0.87 8.50 101.05 0.86 1.72 16 7 C -0.51 0.87 8.50 101.05 0.86 1.73 16 8 O -0.62 0.41 8.56 -35.23 -0.30 0.11 16 9 C 0.09 -0.23 5.12 37.16 0.19 -0.04 16 10 C -0.12 0.22 5.95 -26.73 -0.16 0.06 16 11 C 0.05 -0.14 4.74 37.15 0.18 0.04 16 12 O -0.27 -0.27 8.15 -41.53 -0.34 -0.61 16 13 C 0.20 0.10 6.67 -39.22 -0.26 -0.16 16 14 C -0.21 0.54 9.04 -39.44 -0.36 0.18 16 15 C -0.03 0.10 8.66 -39.61 -0.34 -0.24 16 16 C -0.16 0.31 5.35 -104.60 -0.56 -0.25 16 17 C -0.08 0.22 2.80 36.01 0.10 0.32 16 18 O -0.53 0.92 12.83 -35.23 -0.45 0.47 16 19 Si 0.95 -3.14 25.13 -169.99 -4.27 -7.41 16 20 H -0.25 0.73 7.11 56.52 0.40 1.13 16 21 H -0.25 0.34 7.11 56.52 0.40 0.74 16 22 H -0.25 0.90 7.04 56.52 0.40 1.29 16 23 C 0.01 0.00 9.18 -39.60 -0.36 -0.36 16 24 C -0.08 -0.18 6.87 -79.81 -0.55 -0.73 16 25 N 0.03 0.18 4.45 34.03 0.15 0.33 16 26 O -0.17 -1.09 18.45 -29.46 -0.54 -1.64 16 27 O -0.13 -0.87 17.24 -36.49 -0.63 -1.50 16 28 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 29 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 31 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 32 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 34 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 35 H 0.05 0.01 8.14 -51.92 -0.42 -0.42 16 36 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 38 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 39 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 42 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 43 H 0.06 -0.24 7.21 -51.93 -0.37 -0.62 16 44 H 0.06 -0.24 7.22 -51.93 -0.37 -0.62 16 45 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 46 H 0.09 -0.07 8.14 -51.93 -0.42 -0.50 16 47 H 0.07 -0.35 7.66 -51.93 -0.40 -0.74 16 48 H 0.07 -0.35 7.66 -51.93 -0.40 -0.75 16 49 H 0.16 -0.85 6.30 -52.48 -0.33 -1.18 16 50 H 0.14 -0.72 4.86 -52.48 -0.25 -0.97 16 51 H 0.13 -0.45 7.96 -51.93 -0.41 -0.86 16 52 H 0.38 -1.90 8.70 45.56 0.40 -1.50 16 53 H 0.17 -0.02 7.61 -52.49 -0.40 -0.42 16 LS Contribution 429.09 15.07 6.47 6.47 Total: 0.00 -7.52 429.09 -9.24 -16.76 By element: Atomic # 1 Polarization: -4.38 SS G_CDS: -8.30 Total: -12.68 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 0.42 Total: 3.58 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: 0.15 Total: 0.33 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -2.26 Total: -3.17 kcal Atomic # 14 Polarization: -5.58 SS G_CDS: -5.71 Total: -11.29 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -7.52 -9.24 -16.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.625 kcal (2) G-P(sol) polarization free energy of solvation -7.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds