Wall clock time and date at job start Tue Mar 9 2021 18:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38710 * 120.05453 * 359.97438 * 11 10 9 13 13 C 1.38177 * 119.94234 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.05511 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.94352 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.46842 * 244.99978 * 15 14 13 17 17 Si 1.86295 * 109.46881 * 5.00114 * 15 14 13 18 18 H 1.48497 * 109.47293 * 60.00108 * 17 15 14 19 19 H 1.48505 * 109.46841 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47278 * 299.99980 * 17 15 14 21 21 C 1.38293 * 120.11083 * 0.02562 * 14 13 12 22 22 C 1.38119 * 120.05804 * 359.74528 * 21 14 13 23 23 N 1.48001 * 120.02755 * 180.27459 * 22 21 14 24 24 O 1.21791 * 120.00283 * 0.20908 * 23 22 21 25 25 O 1.21803 * 119.99830 * 180.20856 * 23 22 21 26 26 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 27 27 C 1.38234 * 120.00005 * 0.52168 * 26 8 7 28 28 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 29 29 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 30 30 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 33 33 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 34 34 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 35 35 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 36 36 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 37 37 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 38 38 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 40 40 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 41 41 H 1.07997 * 120.03191 * 0.02562 * 12 11 10 42 42 H 1.07991 * 119.96968 * 180.02562 * 13 12 11 43 43 H 1.08998 * 109.46987 * 125.00484 * 15 14 13 44 44 H 0.96702 * 114.00284 * 60.00444 * 16 15 14 45 45 H 1.08000 * 119.97060 * 179.97438 * 21 14 13 46 46 H 1.07999 * 119.99927 * 180.24100 * 26 8 7 47 47 H 1.08001 * 120.00310 * 179.72165 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0867 7.0788 13 6 5.8018 -4.7037 8.1460 14 6 7.1820 -4.7412 8.2136 15 6 7.8600 -5.4153 9.3785 16 8 8.5816 -4.4429 10.1374 17 14 6.5769 -6.2216 10.4621 18 1 5.8271 -7.2320 9.6734 19 1 7.2450 -6.8853 11.6103 20 1 5.6359 -5.1896 10.9666 21 6 7.9416 -4.1612 7.2141 22 6 7.3226 -3.5473 6.1427 23 7 8.1361 -2.9321 5.0703 24 8 9.3520 -2.9703 5.1303 25 8 7.5897 -2.3876 4.1277 26 6 3.1758 -0.8216 3.8171 27 6 2.7155 -0.1698 2.6883 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5739 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1206 2.2703 0.8901 34 1 2.1206 -1.9058 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8778 -1.5214 37 1 2.5356 -2.7987 0.5825 38 1 3.3559 -3.9596 2.5930 39 1 3.5293 -2.3833 5.9053 40 1 3.5332 -3.9242 5.0141 41 1 4.0994 -4.0587 7.0258 42 1 5.2108 -5.1577 8.9276 43 1 8.5508 -6.1727 9.0081 44 1 8.0287 -3.7366 10.4989 45 1 9.0197 -4.1914 7.2694 46 1 3.3550 -0.2663 4.7259 47 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29190_9276060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:09:54 Heat of formation + Delta-G solvation = -61.955915 kcal Electronic energy + Delta-G solvation = -29217.033704 eV Core-core repulsion = 25070.980373 eV Total energy + Delta-G solvation = -4146.053330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02791 -41.61824 -40.30295 -39.35153 -37.54124 -37.17568 -33.75074 -32.97481 -32.04554 -31.92981 -29.59642 -28.44058 -28.42819 -27.89652 -27.57076 -26.53782 -24.01443 -23.54244 -22.82052 -22.04919 -20.38074 -19.48738 -19.20003 -18.46293 -18.33234 -17.92847 -17.28165 -17.09984 -16.54852 -16.31975 -16.13672 -15.77100 -15.68712 -15.47867 -14.83172 -14.41499 -14.25554 -14.19936 -14.08684 -13.98506 -13.94380 -13.82975 -13.62280 -13.31337 -13.25822 -13.25604 -13.10549 -12.68920 -12.54502 -12.49733 -12.35476 -12.25005 -11.96251 -11.94462 -11.86943 -11.79473 -11.06136 -10.90789 -10.89924 -10.87177 -10.73253 -9.85352 -9.80938 -9.74927 -1.12199 -0.32881 0.06971 0.37245 0.51373 0.52774 0.89927 1.18139 1.26393 1.63747 1.69100 1.69948 1.83949 1.96562 2.00875 2.53095 2.92830 3.02046 3.08615 3.24541 3.32767 3.51425 3.60098 3.60565 3.75205 3.90015 4.10353 4.11208 4.20231 4.22891 4.37510 4.45328 4.48988 4.63281 4.69491 4.70092 4.70567 4.74053 4.75111 4.76401 4.76685 4.94622 4.97468 5.10310 5.34517 5.44324 5.48743 5.50030 5.52699 5.54971 5.59876 5.79487 6.06437 6.30748 6.90898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.357 4.357 6 C -0.091 4.091 7 C -0.101 4.101 8 C -0.091 4.091 9 C 0.093 3.907 10 O -0.271 6.271 11 C 0.204 3.796 12 C -0.209 4.209 13 C -0.033 4.033 14 C -0.161 4.161 15 C -0.077 4.077 16 O -0.534 6.534 17 Si 0.947 3.053 18 H -0.247 1.247 19 H -0.246 1.246 20 H -0.249 1.249 21 C 0.012 3.988 22 C -0.081 4.081 23 N 0.033 4.967 24 O -0.174 6.174 25 O -0.131 6.131 26 C -0.101 4.101 27 C -0.091 4.091 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.378 0.622 45 H 0.165 0.835 46 H 0.120 0.880 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -1.601 2.783 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.398 4.398 6 C -0.109 4.109 7 C -0.120 4.120 8 C -0.092 4.092 9 C 0.019 3.981 10 O -0.182 6.182 11 C 0.154 3.846 12 C -0.228 4.228 13 C -0.050 4.050 14 C -0.162 4.162 15 C -0.188 4.188 16 O -0.339 6.339 17 Si 0.769 3.231 18 H -0.170 1.170 19 H -0.169 1.169 20 H -0.173 1.173 21 C -0.007 4.007 22 C -0.165 4.165 23 N 0.553 4.447 24 O -0.384 6.384 25 O -0.353 6.353 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.173 0.827 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.225 0.775 45 H 0.182 0.818 46 H 0.138 0.862 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.790 -2.614 3.561 8.101 hybrid contribution -0.021 0.520 -0.160 0.545 sum -6.812 -2.094 3.401 7.896 Atomic orbital electron populations 1.26123 1.20427 1.04558 1.04521 0.78183 0.66763 0.66186 0.63671 1.26139 1.06632 1.18478 1.04553 1.26139 1.06632 1.07997 1.15036 1.27515 1.02627 0.99498 1.10189 1.21075 0.97441 0.94691 0.97686 1.21116 0.98478 0.99869 0.92499 1.19279 1.01586 0.94216 0.94078 1.21917 0.77432 1.01077 0.97685 1.86541 1.22125 1.70055 1.39463 1.18705 0.89497 0.89073 0.87368 1.21279 1.01232 1.04846 0.95454 1.21317 0.94089 0.93127 0.96517 1.20255 0.93203 1.04006 0.98735 1.25004 1.04695 0.95430 0.93638 1.86574 1.37504 1.39708 1.70126 0.85715 0.77040 0.80453 0.79899 1.17046 1.16890 1.17262 1.20827 1.02548 0.89196 0.88133 1.20599 0.88166 1.12770 0.95000 1.43299 1.01177 0.99047 1.01225 1.94557 0.95453 1.64363 1.84064 1.94630 1.74630 1.42414 1.23613 1.21116 0.98477 0.93362 0.99006 1.21077 0.97444 0.99801 0.92575 0.91188 0.90975 0.91185 0.90915 0.90925 0.91192 0.91192 0.90924 0.90915 0.85786 0.86163 0.90269 0.90263 0.82698 0.84067 0.85736 0.77462 0.81756 0.86168 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.66 16 2 Si 1.06 -2.63 12.32 -169.99 -2.09 -4.73 16 3 C -0.45 0.71 8.53 101.05 0.86 1.58 16 4 C -0.45 0.71 8.53 101.05 0.86 1.57 16 5 C -0.36 0.07 4.59 -39.58 -0.18 -0.11 16 6 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 7 C -0.10 -0.08 9.70 -39.58 -0.38 -0.46 16 8 C -0.09 -0.07 5.51 -104.63 -0.58 -0.65 16 9 C 0.09 -0.09 4.86 36.00 0.18 0.09 16 10 O -0.27 -0.59 8.13 -41.52 -0.34 -0.93 16 11 C 0.20 0.24 6.67 -39.22 -0.26 -0.02 16 12 C -0.21 0.40 9.04 -39.43 -0.36 0.04 16 13 C -0.03 0.08 8.66 -39.60 -0.34 -0.26 16 14 C -0.16 0.25 5.35 -104.60 -0.56 -0.31 16 15 C -0.08 0.20 2.80 36.01 0.10 0.30 16 16 O -0.53 0.77 12.83 -35.23 -0.45 0.31 16 17 Si 0.95 -2.85 25.13 -169.99 -4.27 -7.12 16 18 H -0.25 0.65 7.11 56.52 0.40 1.05 16 19 H -0.25 0.28 7.11 56.52 0.40 0.68 16 20 H -0.25 0.81 7.04 56.52 0.40 1.21 16 21 C 0.01 0.01 9.19 -39.60 -0.36 -0.36 16 22 C -0.08 -0.22 6.87 -79.81 -0.55 -0.77 16 23 N 0.03 0.20 4.45 34.03 0.15 0.35 16 24 O -0.17 -1.18 18.45 -29.46 -0.54 -1.72 16 25 O -0.13 -0.99 17.24 -36.49 -0.63 -1.61 16 26 C -0.10 -0.08 9.70 -39.58 -0.38 -0.46 16 27 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 34 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 37 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 38 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.08 -0.24 7.61 -51.93 -0.40 -0.63 16 40 H 0.08 -0.23 7.60 -51.93 -0.39 -0.63 16 41 H 0.16 -0.72 6.30 -52.49 -0.33 -1.05 16 42 H 0.14 -0.65 4.86 -52.49 -0.25 -0.91 16 43 H 0.12 -0.41 7.96 -51.93 -0.41 -0.82 16 44 H 0.38 -1.79 8.70 45.56 0.40 -1.40 16 45 H 0.16 0.04 7.61 -52.49 -0.40 -0.36 16 46 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 47 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 LS Contribution 399.79 15.07 6.02 6.02 Total: 0.00 -8.22 399.79 -9.88 -18.10 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: -5.91 Total: -9.74 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.82 Total: 1.06 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: 0.15 Total: 0.35 kcal Atomic # 8 Polarization: -1.98 SS G_CDS: -1.96 Total: -3.94 kcal Atomic # 14 Polarization: -5.48 SS G_CDS: -6.37 Total: -11.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -8.22 -9.88 -18.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_9276060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.855 kcal (2) G-P(sol) polarization free energy of solvation -8.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds