Wall clock time and date at job start Tue Mar 9 2021 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38710 * 120.05453 * 359.97438 * 11 10 9 13 13 C 1.38177 * 119.94234 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.05511 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.94352 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.46842 * 244.99978 * 15 14 13 17 17 Si 1.86295 * 109.46881 * 5.00114 * 15 14 13 18 18 H 1.48497 * 109.47293 * 60.00108 * 17 15 14 19 19 H 1.48505 * 109.46841 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47278 * 299.99980 * 17 15 14 21 21 C 1.38293 * 120.11083 * 0.02562 * 14 13 12 22 22 C 1.38119 * 120.05804 * 359.74528 * 21 14 13 23 23 N 1.48001 * 120.02755 * 180.27459 * 22 21 14 24 24 O 1.21791 * 120.00283 * 0.20908 * 23 22 21 25 25 O 1.21803 * 119.99830 * 180.20856 * 23 22 21 26 26 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 27 27 C 1.38234 * 120.00005 * 0.52168 * 26 8 7 28 28 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 29 29 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 30 30 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 33 33 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 34 34 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 35 35 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 36 36 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 37 37 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 38 38 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 40 40 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 41 41 H 1.07997 * 120.03191 * 0.02562 * 12 11 10 42 42 H 1.07991 * 119.96968 * 180.02562 * 13 12 11 43 43 H 1.08998 * 109.46987 * 125.00484 * 15 14 13 44 44 H 0.96702 * 114.00284 * 60.00444 * 16 15 14 45 45 H 1.08000 * 119.97060 * 179.97438 * 21 14 13 46 46 H 1.07999 * 119.99927 * 180.24100 * 26 8 7 47 47 H 1.08001 * 120.00310 * 179.72165 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0867 7.0788 13 6 5.8018 -4.7037 8.1460 14 6 7.1820 -4.7412 8.2136 15 6 7.8600 -5.4153 9.3785 16 8 8.5816 -4.4429 10.1374 17 14 6.5769 -6.2216 10.4621 18 1 5.8271 -7.2320 9.6734 19 1 7.2450 -6.8853 11.6103 20 1 5.6359 -5.1896 10.9666 21 6 7.9416 -4.1612 7.2141 22 6 7.3226 -3.5473 6.1427 23 7 8.1361 -2.9321 5.0703 24 8 9.3520 -2.9703 5.1303 25 8 7.5897 -2.3876 4.1277 26 6 3.1758 -0.8216 3.8171 27 6 2.7155 -0.1698 2.6883 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5739 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1206 2.2703 0.8901 34 1 2.1206 -1.9058 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8778 -1.5214 37 1 2.5356 -2.7987 0.5825 38 1 3.3559 -3.9596 2.5930 39 1 3.5293 -2.3833 5.9053 40 1 3.5332 -3.9242 5.0141 41 1 4.0994 -4.0587 7.0258 42 1 5.2108 -5.1577 8.9276 43 1 8.5508 -6.1727 9.0081 44 1 8.0287 -3.7366 10.4989 45 1 9.0197 -4.1914 7.2694 46 1 3.3550 -0.2663 4.7259 47 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29190_9276060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:09:53 Heat of formation + Delta-G solvation = -53.997784 kcal Electronic energy + Delta-G solvation = -29216.688613 eV Core-core repulsion = 25070.980373 eV Total energy + Delta-G solvation = -4145.708240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31799 -41.66878 -40.24378 -39.30201 -37.61991 -37.39291 -33.72944 -32.95149 -31.97420 -31.88826 -29.45587 -28.30427 -28.27335 -27.86716 -27.75620 -26.40438 -24.04132 -23.50700 -22.87291 -21.99574 -20.47984 -19.81813 -19.20221 -18.66371 -18.39115 -17.85668 -17.25674 -17.05120 -16.37602 -16.17176 -16.06883 -15.70069 -15.64259 -15.29415 -14.75246 -14.35291 -14.11848 -14.07389 -13.96871 -13.87142 -13.84145 -13.70947 -13.54880 -13.24186 -13.13934 -13.12468 -12.97412 -12.72389 -12.63288 -12.40554 -12.32291 -12.29252 -12.18808 -12.12590 -11.86961 -11.74500 -10.93149 -10.87107 -10.78531 -10.76679 -10.54248 -9.81682 -9.78853 -9.70567 -1.32210 -0.26077 0.10081 0.13735 0.33288 0.52247 1.12401 1.45107 1.51857 1.71520 1.83792 1.94737 2.00715 2.01101 2.16012 2.66161 2.95683 3.09911 3.22516 3.39351 3.53058 3.64356 3.70413 3.75939 3.78327 4.04158 4.19007 4.19985 4.29325 4.37713 4.51624 4.56019 4.60662 4.70054 4.78522 4.84144 4.84347 4.88024 4.88680 4.88756 4.90507 4.99881 5.04807 5.14842 5.20219 5.38408 5.54345 5.58521 5.58648 5.67713 5.69827 5.82423 6.11718 6.43327 6.66019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.126 2.874 3 C -0.464 4.464 4 C -0.464 4.464 5 C -0.371 4.371 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.088 3.912 10 O -0.297 6.297 11 C 0.195 3.805 12 C -0.196 4.196 13 C -0.019 4.019 14 C -0.152 4.152 15 C -0.083 4.083 16 O -0.553 6.553 17 Si 0.983 3.017 18 H -0.245 1.245 19 H -0.276 1.276 20 H -0.235 1.235 21 C 0.004 3.996 22 C -0.104 4.104 23 N 0.038 4.962 24 O -0.199 6.199 25 O -0.173 6.173 26 C -0.119 4.119 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.189 0.811 42 H 0.172 0.828 43 H 0.128 0.872 44 H 0.391 0.609 45 H 0.159 0.841 46 H 0.129 0.871 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 -2.335 4.180 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.313 2.687 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.411 4.411 6 C -0.124 4.124 7 C -0.137 4.137 8 C -0.106 4.106 9 C 0.015 3.985 10 O -0.208 6.208 11 C 0.145 3.855 12 C -0.215 4.215 13 C -0.037 4.037 14 C -0.153 4.153 15 C -0.192 4.192 16 O -0.360 6.360 17 Si 0.805 3.195 18 H -0.168 1.168 19 H -0.202 1.202 20 H -0.158 1.158 21 C -0.016 4.016 22 C -0.190 4.190 23 N 0.549 4.451 24 O -0.407 6.407 25 O -0.387 6.387 26 C -0.137 4.137 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.206 0.794 42 H 0.189 0.811 43 H 0.146 0.854 44 H 0.241 0.759 45 H 0.177 0.823 46 H 0.147 0.853 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.858 -3.310 4.915 10.657 hybrid contribution 0.611 0.693 -0.491 1.046 sum -8.247 -2.616 4.424 9.718 Atomic orbital electron populations 1.26229 1.21029 1.04588 1.04676 0.77190 0.65488 0.64458 0.61579 1.26305 1.06261 1.19641 1.04907 1.26306 1.06260 1.08578 1.15976 1.28041 1.02273 0.99624 1.11116 1.21388 0.97508 0.95236 0.98250 1.21387 0.98839 1.00564 0.92915 1.19546 1.01606 0.94480 0.94924 1.22157 0.76050 1.02524 0.97807 1.86512 1.23765 1.70332 1.40177 1.18934 0.88968 0.89509 0.88074 1.21657 1.02603 1.03167 0.94074 1.21687 0.93688 0.91654 0.96645 1.20432 0.93751 1.03042 0.98079 1.25222 1.05331 0.95227 0.93410 1.86548 1.38727 1.40472 1.70290 0.85221 0.76157 0.80040 0.78081 1.16821 1.20168 1.15774 1.20895 1.02621 0.89740 0.88297 1.20840 0.88722 1.14632 0.94756 1.43758 1.01198 0.98507 1.01665 1.94515 0.96655 1.64986 1.84510 1.94603 1.74553 1.44210 1.25362 1.21387 0.98825 0.93784 0.99691 1.21390 0.97505 1.00728 0.92756 0.91225 0.90629 0.91228 0.91637 0.90609 0.90835 0.90842 0.90609 0.91637 0.84403 0.85337 0.88030 0.88069 0.79377 0.81091 0.85446 0.75909 0.82336 0.85321 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.77 8.65 113.37 0.98 2.75 16 2 Si 1.13 -5.53 12.32 68.60 0.85 -4.68 16 3 C -0.46 1.38 8.53 113.37 0.97 2.35 16 4 C -0.46 1.37 8.53 113.37 0.97 2.34 16 5 C -0.37 -0.05 4.59 22.27 0.10 0.05 16 6 C -0.11 -0.13 9.29 22.27 0.21 0.08 16 7 C -0.12 -0.27 9.70 22.27 0.22 -0.05 16 8 C -0.11 -0.22 5.51 -19.87 -0.11 -0.32 16 9 C 0.09 -0.22 4.86 71.23 0.35 0.12 16 10 O -0.30 -1.46 8.13 -71.20 -0.58 -2.04 16 11 C 0.20 0.45 6.67 22.51 0.15 0.60 16 12 C -0.20 1.21 9.04 22.37 0.20 1.42 16 13 C -0.02 0.15 8.66 22.26 0.19 0.34 16 14 C -0.15 0.64 5.35 -19.85 -0.11 0.54 16 15 C -0.08 0.50 2.80 71.24 0.20 0.70 16 16 O -0.55 1.87 12.83 -148.98 -1.91 -0.05 16 17 Si 0.98 -7.93 25.13 68.60 1.72 -6.21 16 18 H -0.24 2.00 7.11 99.48 0.71 2.71 16 19 H -0.28 0.74 7.11 99.48 0.71 1.45 16 20 H -0.23 2.38 7.04 99.48 0.70 3.08 16 21 C 0.00 0.01 9.19 22.25 0.20 0.21 16 22 C -0.10 -0.72 6.87 36.47 0.25 -0.47 16 23 N 0.04 0.56 4.45 -46.25 -0.21 0.35 16 24 O -0.20 -3.31 18.45 18.90 0.35 -2.96 16 25 O -0.17 -3.17 17.24 25.60 0.44 -2.72 16 26 C -0.12 -0.26 9.70 22.27 0.22 -0.04 16 27 C -0.11 -0.12 9.29 22.27 0.21 0.08 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.06 -0.09 7.96 -2.39 -0.02 -0.10 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.27 7.69 -2.38 -0.02 -0.29 16 34 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 35 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 36 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 37 H 0.14 -0.39 7.43 -2.91 -0.02 -0.41 16 38 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 39 H 0.10 -0.78 7.61 -2.39 -0.02 -0.79 16 40 H 0.10 -0.76 7.60 -2.39 -0.02 -0.78 16 41 H 0.19 -2.47 6.30 -2.91 -0.02 -2.49 16 42 H 0.17 -2.31 4.86 -2.92 -0.01 -2.33 16 43 H 0.13 -0.89 7.96 -2.39 -0.02 -0.91 16 44 H 0.39 -4.07 8.70 -74.06 -0.64 -4.71 16 45 H 0.16 0.38 7.61 -2.91 -0.02 0.35 16 46 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 47 H 0.14 -0.39 7.43 -2.91 -0.02 -0.41 16 Total: 0.00 -22.28 399.79 6.96 -15.33 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: 1.10 Total: -7.71 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.19 Total: 10.69 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.21 Total: 0.35 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.70 Total: -7.78 kcal Atomic # 14 Polarization: -13.46 SS G_CDS: 2.57 Total: -10.89 kcal Total: -22.28 6.96 -15.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29190_9276060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.670 kcal (2) G-P(sol) polarization free energy of solvation -22.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds