Wall clock time and date at job start Tue Mar 9 2021 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46619 * 2 1 4 4 C 1.52997 * 109.47053 * 240.00270 * 2 1 3 5 5 Si 1.86296 * 109.47292 * 120.00202 * 2 1 3 6 6 C 1.86296 * 109.46984 * 300.00060 * 5 2 1 7 7 C 1.86302 * 109.47179 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47176 * 60.00253 * 5 2 1 9 9 C 1.42904 * 114.00056 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47339 * 179.97438 * 9 8 5 11 11 O 1.42905 * 109.47040 * 64.99630 * 10 9 8 12 12 C 1.35896 * 116.99924 * 180.02562 * 11 10 9 13 13 C 1.38718 * 120.05682 * 0.02717 * 12 11 10 14 14 C 1.38164 * 119.94468 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.05310 * 359.97234 * 14 13 12 16 16 N 1.48014 * 119.94280 * 180.02562 * 15 14 13 17 17 O 1.21796 * 119.99599 * 0.02562 * 16 15 14 18 18 O 1.21792 * 119.99838 * 180.02562 * 16 15 14 19 19 C 1.38290 * 120.11702 * 359.77448 * 15 14 13 20 20 C 1.38127 * 120.04900 * 0.50485 * 19 15 14 21 21 C 1.50701 * 120.02588 * 179.74781 * 20 19 15 22 22 O 1.42895 * 109.47079 * 254.72892 * 21 20 19 23 23 Si 1.86301 * 109.47149 * 14.72387 * 21 20 19 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 H 1.09003 * 109.47098 * 299.99608 * 1 2 3 28 28 H 1.08994 * 109.47150 * 60.00059 * 1 2 3 29 29 H 1.09006 * 109.46484 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47042 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47311 * 299.99842 * 3 2 1 32 32 H 1.09003 * 109.47066 * 60.00372 * 3 2 1 33 33 H 1.09000 * 109.47421 * 300.00106 * 4 2 1 34 34 H 1.09006 * 109.47008 * 59.99741 * 4 2 1 35 35 H 1.09003 * 109.47259 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46865 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.47463 * 299.99662 * 6 5 2 38 38 H 1.09003 * 109.47361 * 60.00457 * 6 5 2 39 39 H 1.09003 * 109.47006 * 300.00065 * 7 5 2 40 40 H 1.08997 * 109.47094 * 59.99572 * 7 5 2 41 41 H 1.08989 * 109.47389 * 180.02562 * 7 5 2 42 42 H 1.08996 * 109.47067 * 59.99814 * 9 8 5 43 43 H 1.09000 * 109.46781 * 299.99886 * 9 8 5 44 44 H 1.09007 * 109.47076 * 305.00316 * 10 9 8 45 45 H 1.08996 * 109.46999 * 185.00064 * 10 9 8 46 46 H 1.08003 * 120.02391 * 359.97438 * 13 12 11 47 47 H 1.07997 * 119.96824 * 179.97438 * 14 13 12 48 48 H 1.07999 * 119.97641 * 180.25013 * 19 15 14 49 49 H 1.09001 * 109.47380 * 134.72289 * 21 20 19 50 50 H 0.96708 * 113.99763 * 299.99687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5214 8 8 1.6075 -2.4160 1.5210 9 6 2.0288 -3.1814 2.6518 10 6 1.4630 -4.5992 2.5475 11 8 2.0314 -5.2565 1.4130 12 6 1.6312 -6.5332 1.1752 13 6 0.7101 -7.1407 2.0159 14 6 0.3045 -8.4387 1.7717 15 6 0.8153 -9.1317 0.6901 16 7 0.3786 -10.5219 0.4304 17 8 -0.4305 -11.0540 1.1690 18 8 0.8284 -11.1336 -0.5219 19 6 1.7297 -8.5267 -0.1526 20 6 2.1428 -7.2312 0.0907 21 6 3.1435 -6.5744 -0.8248 22 8 4.4166 -6.5200 -0.1781 23 14 3.2879 -7.5619 -2.3979 24 1 1.9649 -7.6186 -3.0701 25 1 3.7398 -8.9398 -2.0777 26 1 4.2745 -6.9150 -3.2998 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1301 -0.7208 -1.2495 36 1 1.8939 -0.5137 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0002 3.0423 39 1 4.3778 -1.3911 0.6314 40 1 4.3771 0.1502 1.5216 41 1 4.3775 -1.3917 2.4110 42 1 1.6639 -2.7114 3.5650 43 1 3.1176 -3.2252 2.6757 44 1 0.3799 -4.5507 2.4344 45 1 1.7095 -5.1561 3.4514 46 1 0.3104 -6.5994 2.8608 47 1 -0.4123 -8.9121 2.4262 48 1 2.1243 -9.0688 -0.9992 49 1 2.8119 -5.5630 -1.0599 50 1 4.4162 -6.0202 0.6498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29409_10264010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:10:16 Heat of formation + Delta-G solvation = -149.829423 kcal Electronic energy + Delta-G solvation = -30808.891096 eV Core-core repulsion = 26542.174417 eV Total energy + Delta-G solvation = -4266.716680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.09390 -41.88775 -39.47033 -37.93188 -37.75112 -37.39986 -36.95671 -33.39864 -32.51916 -31.03621 -29.54825 -29.23581 -27.97924 -27.51459 -27.32868 -27.04655 -25.14649 -23.06644 -22.88488 -20.55448 -20.19855 -19.77452 -19.59646 -18.48173 -18.37148 -18.29541 -17.66685 -17.03939 -16.73350 -16.28466 -16.12422 -15.81094 -15.74322 -15.46180 -14.99406 -14.89384 -14.79216 -14.63650 -14.33187 -14.10601 -13.99280 -13.72865 -13.59609 -13.40699 -13.37686 -13.06578 -13.04547 -12.94601 -12.63658 -12.51656 -12.42367 -12.28223 -12.13382 -12.07244 -11.97690 -11.91005 -11.85314 -11.72343 -11.56270 -11.47400 -11.22131 -10.64829 -10.57242 -10.21430 -9.98576 -1.14260 -0.42077 0.32864 0.47146 1.07273 1.21568 1.43760 1.48739 1.52692 1.58181 1.87979 1.91020 1.97666 2.23516 2.98851 3.12544 3.33966 3.45990 3.57149 3.62604 3.71580 3.75722 3.80388 3.96871 3.99969 4.00626 4.04763 4.17461 4.22495 4.35102 4.45579 4.49973 4.53083 4.54782 4.57117 4.59251 4.60784 4.69927 4.74215 4.83817 4.88362 4.98964 4.99484 5.00311 5.14038 5.23143 5.29263 5.36108 5.39490 5.44772 5.46359 5.73515 6.42100 6.76094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.289 2.711 6 C -0.513 4.513 7 C -0.511 4.511 8 O -0.620 6.620 9 C 0.085 3.915 10 C 0.050 3.950 11 O -0.289 6.289 12 C 0.199 3.801 13 C -0.208 4.208 14 C -0.006 4.006 15 C -0.078 4.078 16 N 0.033 4.967 17 O -0.159 6.159 18 O -0.162 6.162 19 C -0.021 4.021 20 C -0.145 4.145 21 C -0.081 4.081 22 O -0.532 6.532 23 Si 0.996 3.004 24 H -0.243 1.243 25 H -0.244 1.244 26 H -0.245 1.245 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.160 0.840 49 H 0.089 0.911 50 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 6.884 4.078 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.421 2.579 6 C -0.615 4.615 7 C -0.613 4.613 8 O -0.579 6.579 9 C 0.010 3.990 10 C -0.025 4.025 11 O -0.201 6.201 12 C 0.151 3.849 13 C -0.227 4.227 14 C -0.025 4.025 15 C -0.162 4.162 16 N 0.551 4.449 17 O -0.375 6.375 18 O -0.377 6.377 19 C -0.040 4.040 20 C -0.147 4.147 21 C -0.189 4.189 22 O -0.337 6.337 23 Si 0.815 3.185 24 H -0.166 1.166 25 H -0.168 1.168 26 H -0.169 1.169 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.173 0.827 47 H 0.178 0.822 48 H 0.177 0.823 49 H 0.107 0.893 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.707 6.686 2.691 7.242 hybrid contribution -0.387 0.787 1.394 1.647 sum 0.320 7.472 4.085 8.522 Atomic orbital electron populations 1.21516 0.93829 1.01920 1.01864 1.25788 1.00652 1.02675 1.12703 1.21560 1.00820 0.94857 1.02207 1.21514 1.00671 1.00209 0.96756 0.76683 0.63092 0.53101 0.65060 1.27057 1.07054 1.09746 1.17623 1.27029 1.24856 1.04862 1.04570 1.85412 1.79207 1.46190 1.47085 1.22096 0.99552 0.89249 0.88141 1.23289 0.99746 0.92338 0.87121 1.86172 1.63870 1.22460 1.47584 1.19123 0.90083 0.83914 0.91829 1.21309 1.02290 0.95940 1.03178 1.20886 0.95441 0.92989 0.93224 1.20881 1.07540 0.84439 1.03344 1.43479 0.99090 1.02619 0.99678 1.94552 1.27880 1.70092 1.44929 1.94568 1.58353 1.64005 1.20735 1.20841 0.92012 0.93233 0.97867 1.19621 1.03066 0.93655 0.98389 1.25223 0.83816 1.06108 1.03760 1.86738 1.27867 1.77726 1.41373 0.84699 0.81591 0.78881 0.73357 1.16604 1.16801 1.16853 0.92712 0.92729 0.92257 0.92469 0.92426 0.92528 0.92165 0.92754 0.92629 0.91514 0.90527 0.90821 0.90691 0.90638 0.91507 0.89939 0.91074 0.89851 0.89747 0.82675 0.82224 0.82316 0.89285 0.78261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.16 7.85 37.16 0.29 0.45 16 2 C -0.37 0.61 0.53 -90.62 -0.05 0.56 16 3 C -0.14 0.23 7.85 37.16 0.29 0.52 16 4 C -0.13 0.14 7.85 37.16 0.29 0.43 16 5 Si 1.29 -3.93 8.45 -169.99 -1.44 -5.36 16 6 C -0.51 1.42 8.50 101.05 0.86 2.28 16 7 C -0.51 1.23 8.50 101.05 0.86 2.09 16 8 O -0.62 1.49 8.52 -40.08 -0.34 1.15 16 9 C 0.09 -0.39 5.51 37.16 0.20 -0.18 16 10 C 0.05 -0.23 5.12 37.16 0.19 -0.04 16 11 O -0.29 0.68 9.01 -24.26 -0.22 0.46 16 12 C 0.20 -0.29 6.62 -39.22 -0.26 -0.55 16 13 C -0.21 0.53 9.04 -39.43 -0.36 0.17 16 14 C -0.01 0.00 9.55 -39.61 -0.38 -0.37 16 15 C -0.08 -0.15 6.85 -79.93 -0.55 -0.69 16 16 N 0.03 0.15 4.45 33.97 0.15 0.30 16 17 O -0.16 -0.83 18.44 -29.46 -0.54 -1.37 16 18 O -0.16 -0.95 18.44 -29.46 -0.54 -1.49 16 19 C -0.02 -0.03 8.16 -39.60 -0.32 -0.35 16 20 C -0.15 0.01 5.28 -104.47 -0.55 -0.54 16 21 C -0.08 0.03 2.33 36.01 0.08 0.12 16 22 O -0.53 -0.10 12.65 -35.23 -0.45 -0.55 16 23 Si 1.00 0.24 25.74 -169.99 -4.37 -4.13 16 24 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 25 H -0.24 -0.28 6.74 56.52 0.38 0.11 16 26 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 27 H 0.05 -0.10 7.79 -51.93 -0.40 -0.50 16 28 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.06 7.97 -51.93 -0.41 -0.48 16 30 H 0.06 -0.13 7.79 -51.93 -0.40 -0.53 16 31 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 33 H 0.06 -0.05 7.97 -51.93 -0.41 -0.46 16 34 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.05 -0.08 7.79 -51.93 -0.40 -0.49 16 36 H 0.07 -0.23 7.48 -51.93 -0.39 -0.62 16 37 H 0.08 -0.20 7.79 -51.93 -0.40 -0.60 16 38 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 39 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 40 H 0.07 -0.18 7.79 -51.93 -0.40 -0.58 16 41 H 0.07 -0.20 7.48 -51.94 -0.39 -0.59 16 42 H 0.08 -0.54 7.21 -51.93 -0.37 -0.92 16 43 H 0.07 -0.39 7.22 -51.93 -0.37 -0.76 16 44 H 0.08 -0.43 7.66 -51.92 -0.40 -0.83 16 45 H 0.08 -0.59 7.66 -51.93 -0.40 -0.99 16 46 H 0.16 -0.86 6.30 -52.48 -0.33 -1.19 16 47 H 0.16 -0.36 7.60 -52.49 -0.40 -0.76 16 48 H 0.16 0.17 4.43 -52.49 -0.23 -0.06 16 49 H 0.09 -0.14 7.83 -51.93 -0.41 -0.54 16 50 H 0.37 -0.90 8.61 45.56 0.39 -0.51 16 LS Contribution 408.37 15.07 6.15 6.15 Total: 0.00 -6.32 408.37 -8.44 -14.76 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -7.45 Total: -13.81 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 0.61 Total: 3.90 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: 0.15 Total: 0.30 kcal Atomic # 8 Polarization: 0.29 SS G_CDS: -2.09 Total: -1.80 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: -5.81 Total: -9.50 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -6.32 -8.44 -14.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_10264010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.073 kcal (2) G-P(sol) polarization free energy of solvation -6.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds