Wall clock time and date at job start Tue Mar 9 2021 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46619 * 2 1 4 4 C 1.52997 * 109.47053 * 240.00270 * 2 1 3 5 5 Si 1.86296 * 109.47292 * 120.00202 * 2 1 3 6 6 C 1.86296 * 109.46984 * 300.00060 * 5 2 1 7 7 C 1.86302 * 109.47179 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47176 * 60.00253 * 5 2 1 9 9 C 1.42904 * 114.00056 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47339 * 179.97438 * 9 8 5 11 11 O 1.42905 * 109.47040 * 64.99630 * 10 9 8 12 12 C 1.35896 * 116.99924 * 180.02562 * 11 10 9 13 13 C 1.38718 * 120.05682 * 0.02717 * 12 11 10 14 14 C 1.38164 * 119.94468 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.05310 * 359.97234 * 14 13 12 16 16 N 1.48014 * 119.94280 * 180.02562 * 15 14 13 17 17 O 1.21796 * 119.99599 * 0.02562 * 16 15 14 18 18 O 1.21792 * 119.99838 * 180.02562 * 16 15 14 19 19 C 1.38290 * 120.11702 * 359.77448 * 15 14 13 20 20 C 1.38127 * 120.04900 * 0.50485 * 19 15 14 21 21 C 1.50701 * 120.02588 * 179.74781 * 20 19 15 22 22 O 1.42895 * 109.47079 * 254.72892 * 21 20 19 23 23 Si 1.86301 * 109.47149 * 14.72387 * 21 20 19 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 H 1.09003 * 109.47098 * 299.99608 * 1 2 3 28 28 H 1.08994 * 109.47150 * 60.00059 * 1 2 3 29 29 H 1.09006 * 109.46484 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47042 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47311 * 299.99842 * 3 2 1 32 32 H 1.09003 * 109.47066 * 60.00372 * 3 2 1 33 33 H 1.09000 * 109.47421 * 300.00106 * 4 2 1 34 34 H 1.09006 * 109.47008 * 59.99741 * 4 2 1 35 35 H 1.09003 * 109.47259 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46865 * 180.02562 * 6 5 2 37 37 H 1.09000 * 109.47463 * 299.99662 * 6 5 2 38 38 H 1.09003 * 109.47361 * 60.00457 * 6 5 2 39 39 H 1.09003 * 109.47006 * 300.00065 * 7 5 2 40 40 H 1.08997 * 109.47094 * 59.99572 * 7 5 2 41 41 H 1.08989 * 109.47389 * 180.02562 * 7 5 2 42 42 H 1.08996 * 109.47067 * 59.99814 * 9 8 5 43 43 H 1.09000 * 109.46781 * 299.99886 * 9 8 5 44 44 H 1.09007 * 109.47076 * 305.00316 * 10 9 8 45 45 H 1.08996 * 109.46999 * 185.00064 * 10 9 8 46 46 H 1.08003 * 120.02391 * 359.97438 * 13 12 11 47 47 H 1.07997 * 119.96824 * 179.97438 * 14 13 12 48 48 H 1.07999 * 119.97641 * 180.25013 * 19 15 14 49 49 H 1.09001 * 109.47380 * 134.72289 * 21 20 19 50 50 H 0.96708 * 113.99763 * 299.99687 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5214 8 8 1.6075 -2.4160 1.5210 9 6 2.0288 -3.1814 2.6518 10 6 1.4630 -4.5992 2.5475 11 8 2.0314 -5.2565 1.4130 12 6 1.6312 -6.5332 1.1752 13 6 0.7101 -7.1407 2.0159 14 6 0.3045 -8.4387 1.7717 15 6 0.8153 -9.1317 0.6901 16 7 0.3786 -10.5219 0.4304 17 8 -0.4305 -11.0540 1.1690 18 8 0.8284 -11.1336 -0.5219 19 6 1.7297 -8.5267 -0.1526 20 6 2.1428 -7.2312 0.0907 21 6 3.1435 -6.5744 -0.8248 22 8 4.4166 -6.5200 -0.1781 23 14 3.2879 -7.5619 -2.3979 24 1 1.9649 -7.6186 -3.0701 25 1 3.7398 -8.9398 -2.0777 26 1 4.2745 -6.9150 -3.2998 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1301 -0.7208 -1.2495 36 1 1.8939 -0.5137 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0002 3.0423 39 1 4.3778 -1.3911 0.6314 40 1 4.3771 0.1502 1.5216 41 1 4.3775 -1.3917 2.4110 42 1 1.6639 -2.7114 3.5650 43 1 3.1176 -3.2252 2.6757 44 1 0.3799 -4.5507 2.4344 45 1 1.7095 -5.1561 3.4514 46 1 0.3104 -6.5994 2.8608 47 1 -0.4123 -8.9121 2.4262 48 1 2.1243 -9.0688 -0.9992 49 1 2.8119 -5.5630 -1.0599 50 1 4.4162 -6.0202 0.6498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29409_10264010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:10:15 Heat of formation + Delta-G solvation = -142.876186 kcal Electronic energy + Delta-G solvation = -30808.589581 eV Core-core repulsion = 26542.174417 eV Total energy + Delta-G solvation = -4266.415165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31816 -41.78608 -39.28647 -37.78099 -37.66140 -37.63999 -36.81043 -33.33189 -32.44098 -30.73404 -29.30070 -29.03183 -27.83289 -27.44930 -27.35621 -27.01131 -24.91335 -22.99585 -22.78759 -20.40634 -20.27586 -19.85478 -19.58918 -18.66089 -18.30288 -18.08335 -17.55128 -16.80682 -16.60645 -16.06554 -15.96174 -15.65890 -15.60259 -15.34266 -14.84803 -14.76313 -14.63399 -14.52863 -14.17796 -13.93359 -13.85860 -13.50331 -13.35012 -13.21765 -13.14850 -12.94202 -12.92546 -12.77845 -12.65788 -12.41930 -12.39785 -12.37071 -12.35842 -12.28721 -12.01642 -11.80224 -11.68807 -11.53433 -11.43018 -11.25187 -11.18529 -10.56653 -10.28932 -10.04070 -9.87471 -1.30290 -0.33025 0.19048 0.33268 1.06153 1.39265 1.41616 1.54430 1.77200 1.82223 1.85254 2.03574 2.16609 2.49332 3.06550 3.23961 3.44654 3.63156 3.77306 3.85443 3.94002 4.09644 4.12102 4.13566 4.15365 4.26592 4.33785 4.44714 4.46937 4.54172 4.62946 4.66202 4.71690 4.77729 4.80503 4.81676 4.83012 4.84098 4.84283 4.95201 5.01104 5.09994 5.10650 5.21053 5.23462 5.35961 5.42429 5.43836 5.50287 5.63273 5.68568 5.97786 6.40786 6.60709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.389 4.389 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.332 2.668 6 C -0.520 4.520 7 C -0.522 4.522 8 O -0.635 6.635 9 C 0.069 3.931 10 C 0.037 3.963 11 O -0.293 6.293 12 C 0.211 3.789 13 C -0.194 4.194 14 C -0.002 4.002 15 C -0.100 4.100 16 N 0.036 4.964 17 O -0.166 6.166 18 O -0.209 6.209 19 C -0.033 4.033 20 C -0.153 4.153 21 C -0.072 4.072 22 O -0.545 6.545 23 Si 1.003 2.997 24 H -0.243 1.243 25 H -0.266 1.266 26 H -0.257 1.257 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.194 0.806 47 H 0.176 0.824 48 H 0.149 0.851 49 H 0.105 0.895 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.002 8.506 6.622 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.431 4.431 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.460 2.540 6 C -0.622 4.622 7 C -0.623 4.623 8 O -0.595 6.595 9 C -0.006 4.006 10 C -0.037 4.037 11 O -0.204 6.204 12 C 0.162 3.838 13 C -0.213 4.213 14 C -0.021 4.021 15 C -0.184 4.184 16 N 0.547 4.453 17 O -0.383 6.383 18 O -0.415 6.415 19 C -0.052 4.052 20 C -0.155 4.155 21 C -0.181 4.181 22 O -0.352 6.352 23 Si 0.825 3.175 24 H -0.166 1.166 25 H -0.190 1.190 26 H -0.181 1.181 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.133 0.867 46 H 0.211 0.789 47 H 0.193 0.807 48 H 0.166 0.834 49 H 0.123 0.877 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.461 8.296 5.166 9.784 hybrid contribution -0.278 0.440 0.665 0.844 sum 0.182 8.736 5.831 10.505 Atomic orbital electron populations 1.21538 0.94314 1.01788 1.01697 1.26056 1.00370 1.02930 1.13718 1.21606 1.01200 0.95003 1.02073 1.21538 1.00931 1.00082 0.96851 0.75894 0.61979 0.52619 0.63489 1.27123 1.06982 1.09797 1.18258 1.27161 1.25729 1.04756 1.04629 1.85409 1.79388 1.46465 1.48212 1.22454 1.00439 0.89302 0.88380 1.23668 1.00322 0.92365 0.87336 1.86192 1.63835 1.21679 1.48713 1.19144 0.89380 0.84260 0.91000 1.21680 1.01050 0.94979 1.03551 1.21181 0.95190 0.93511 0.92225 1.21048 1.09247 0.82914 1.05214 1.43881 0.98566 1.03718 0.99090 1.94504 1.28082 1.71008 1.44740 1.94556 1.59650 1.65370 1.21926 1.20847 0.92496 0.93966 0.97921 1.19608 1.03395 0.93219 0.99271 1.25012 0.83751 1.06423 1.02943 1.86712 1.28076 1.78180 1.42230 0.84593 0.81018 0.77817 0.74104 1.16621 1.19042 1.18058 0.91972 0.93854 0.92323 0.91959 0.93526 0.91753 0.92320 0.93813 0.92244 0.90400 0.90796 0.91005 0.91411 0.90885 0.90660 0.87509 0.90205 0.88911 0.86706 0.78851 0.80698 0.83393 0.87748 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.32 7.85 71.98 0.56 0.89 16 2 C -0.39 1.31 0.53 -10.79 -0.01 1.30 16 3 C -0.14 0.45 7.85 71.98 0.56 1.02 16 4 C -0.14 0.22 7.85 71.98 0.56 0.79 16 5 Si 1.33 -9.91 8.45 68.60 0.58 -9.33 16 6 C -0.52 3.83 8.50 113.37 0.96 4.79 16 7 C -0.52 3.10 8.50 113.37 0.96 4.06 16 8 O -0.64 4.41 8.52 -144.34 -1.23 3.18 16 9 C 0.07 -0.85 5.51 71.98 0.40 -0.45 16 10 C 0.04 -0.49 5.12 71.98 0.37 -0.12 16 11 O -0.29 2.22 9.01 -87.74 -0.79 1.43 16 12 C 0.21 -1.07 6.62 22.51 0.15 -0.92 16 13 C -0.19 1.56 9.04 22.37 0.20 1.76 16 14 C 0.00 0.01 9.55 22.25 0.21 0.22 16 15 C -0.10 -0.44 6.85 36.39 0.25 -0.19 16 16 N 0.04 0.40 4.45 -46.43 -0.21 0.19 16 17 O -0.17 -1.95 18.44 18.89 0.35 -1.60 16 18 O -0.21 -3.13 18.44 18.90 0.35 -2.79 16 19 C -0.03 -0.12 8.16 22.26 0.18 0.06 16 20 C -0.15 0.08 5.28 -19.77 -0.10 -0.02 16 21 C -0.07 0.06 2.33 71.24 0.17 0.23 16 22 O -0.54 -0.02 12.65 -148.98 -1.89 -1.91 16 23 Si 1.00 2.18 25.74 68.60 1.77 3.94 16 24 H -0.24 -0.45 7.11 99.48 0.71 0.26 16 25 H -0.27 -1.43 6.74 99.48 0.67 -0.76 16 26 H -0.26 -0.95 7.11 99.48 0.71 -0.24 16 27 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 28 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 -0.14 7.97 -2.38 -0.02 -0.16 16 30 H 0.06 -0.28 7.79 -2.39 -0.02 -0.29 16 31 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 -0.32 7.79 -2.39 -0.02 -0.33 16 33 H 0.06 -0.09 7.97 -2.39 -0.02 -0.10 16 34 H 0.04 0.00 8.14 -2.38 -0.02 -0.01 16 35 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 36 H 0.08 -0.74 7.48 -2.38 -0.02 -0.76 16 37 H 0.07 -0.48 7.79 -2.39 -0.02 -0.50 16 38 H 0.07 -0.48 7.79 -2.39 -0.02 -0.50 16 39 H 0.07 -0.29 7.79 -2.39 -0.02 -0.31 16 40 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 41 H 0.07 -0.58 7.48 -2.39 -0.02 -0.60 16 42 H 0.11 -1.82 7.21 -2.39 -0.02 -1.83 16 43 H 0.08 -1.11 7.22 -2.39 -0.02 -1.13 16 44 H 0.09 -1.35 7.66 -2.38 -0.02 -1.37 16 45 H 0.12 -2.18 7.66 -2.39 -0.02 -2.20 16 46 H 0.19 -3.09 6.30 -2.91 -0.02 -3.11 16 47 H 0.18 -1.09 7.60 -2.91 -0.02 -1.12 16 48 H 0.15 0.74 4.43 -2.91 -0.01 0.72 16 49 H 0.10 -0.41 7.83 -2.39 -0.02 -0.43 16 50 H 0.38 -2.32 8.61 -74.05 -0.64 -2.96 16 Total: 0.00 -17.57 408.37 5.39 -12.18 By element: Atomic # 1 Polarization: -19.72 SS G_CDS: 1.02 Total: -18.70 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.44 Total: 13.41 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.21 Total: 0.19 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: -3.21 Total: -1.69 kcal Atomic # 14 Polarization: -7.74 SS G_CDS: 2.35 Total: -5.39 kcal Total: -17.57 5.39 -12.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_10264010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.699 kcal (2) G-P(sol) polarization free energy of solvation -17.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds