Wall clock time and date at job start Tue Mar 9 2021 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46691 * 2 1 4 4 C 1.52997 * 109.47079 * 240.00534 * 2 1 3 5 5 Si 1.86297 * 109.47057 * 119.99978 * 2 1 3 6 6 C 1.86295 * 109.47155 * 300.00153 * 5 2 1 7 7 C 1.86300 * 109.46924 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.47138 * 60.00485 * 5 2 1 9 9 C 1.42892 * 114.00041 * 180.02562 * 8 5 2 10 10 O 1.42905 * 109.47366 * 179.97438 * 9 8 5 11 11 C 1.35896 * 116.99924 * 74.99626 * 10 9 8 12 12 C 1.38718 * 120.05682 * 0.02717 * 11 10 9 13 13 C 1.38164 * 119.94468 * 179.97438 * 12 11 10 14 14 C 1.38241 * 120.05310 * 359.97234 * 13 12 11 15 15 N 1.48014 * 119.94280 * 180.02562 * 14 13 12 16 16 O 1.21796 * 119.99599 * 0.02562 * 15 14 13 17 17 O 1.21792 * 119.99838 * 180.02562 * 15 14 13 18 18 C 1.38290 * 120.11702 * 359.77448 * 14 13 12 19 19 C 1.38127 * 120.04900 * 0.50485 * 18 14 13 20 20 C 1.50701 * 120.02588 * 179.74781 * 19 18 14 21 21 O 1.42895 * 109.47079 * 254.72892 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.72387 * 20 19 18 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 H 1.09004 * 109.47554 * 299.99908 * 1 2 3 27 27 H 1.09001 * 109.47369 * 60.00228 * 1 2 3 28 28 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46993 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47560 * 299.99455 * 3 2 1 31 31 H 1.09002 * 109.47562 * 60.00338 * 3 2 1 32 32 H 1.09007 * 109.46931 * 299.99290 * 4 2 1 33 33 H 1.09001 * 109.47642 * 59.99405 * 4 2 1 34 34 H 1.08998 * 109.46912 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47167 * 180.02562 * 6 5 2 36 36 H 1.09006 * 109.47142 * 299.99843 * 6 5 2 37 37 H 1.08991 * 109.47677 * 60.00034 * 6 5 2 38 38 H 1.08993 * 109.47312 * 300.00353 * 7 5 2 39 39 H 1.09006 * 109.47162 * 60.00285 * 7 5 2 40 40 H 1.09001 * 109.47237 * 179.97438 * 7 5 2 41 41 H 1.09006 * 109.47612 * 59.99754 * 9 8 5 42 42 H 1.09001 * 109.47171 * 299.99867 * 9 8 5 43 43 H 1.08003 * 120.02391 * 359.97438 * 12 11 10 44 44 H 1.07997 * 119.96824 * 179.97438 * 13 12 11 45 45 H 1.07999 * 119.97641 * 180.25013 * 18 14 13 46 46 H 1.09001 * 109.47380 * 134.72289 * 20 19 18 47 47 H 0.96708 * 113.99763 * 299.99687 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5299 0.0000 3.0422 7 6 4.0139 -0.8789 1.5207 8 8 1.6074 -2.4160 1.5211 9 6 2.0285 -3.1813 2.6518 10 8 1.5001 -4.5055 2.5544 11 6 2.0880 -5.3399 1.6572 12 6 3.1519 -4.8935 0.8869 13 6 3.7482 -5.7440 -0.0243 14 6 3.2859 -7.0388 -0.1681 15 7 3.9269 -7.9479 -1.1446 16 8 4.8611 -7.5551 -1.8200 17 8 3.5201 -9.0888 -1.2725 18 6 2.2289 -7.4878 0.6023 19 6 1.6256 -6.6397 1.5104 20 6 0.4701 -7.1279 2.3457 21 8 -0.7473 -6.5707 1.8464 22 14 0.3834 -8.9869 2.2597 23 1 1.6486 -9.5661 2.7785 24 1 0.1877 -9.4087 0.8493 25 1 -0.7556 -9.4679 3.0822 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7215 -1.2490 35 1 1.8936 -0.5136 3.9322 36 1 1.8933 1.0277 3.0422 37 1 0.4400 0.0000 3.0423 38 1 4.3769 -1.3929 0.6307 39 1 4.3777 0.1487 1.5205 40 1 4.3773 -1.3923 2.4109 41 1 1.6637 -2.7112 3.5652 42 1 3.1174 -3.2251 2.6758 43 1 3.5136 -3.8821 0.9993 44 1 4.5762 -5.3968 -0.6245 45 1 1.8722 -8.5011 0.4909 46 1 0.6138 -6.8184 3.3809 47 1 -0.7728 -5.6041 1.8614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_29409_14468166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:10:35 Heat of formation + Delta-G solvation = -147.991269 kcal Electronic energy + Delta-G solvation = -29309.886471 eV Core-core repulsion = 25198.787119 eV Total energy + Delta-G solvation = -4111.099352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10738 -41.98681 -39.59471 -37.75498 -37.41267 -37.32339 -37.05469 -33.31240 -32.37582 -29.82059 -29.38447 -28.13053 -28.06213 -27.62683 -27.21854 -26.65054 -23.77105 -22.92534 -20.70626 -20.21114 -19.84847 -19.66047 -18.83139 -18.40481 -18.29256 -18.06416 -17.01162 -16.41258 -16.29651 -16.02252 -15.62963 -15.57710 -15.18051 -15.05733 -14.92814 -14.61598 -14.49343 -14.34157 -14.11648 -13.84093 -13.74618 -13.56295 -13.45340 -13.24929 -13.14139 -13.13021 -12.61100 -12.43160 -12.32453 -12.29033 -12.17789 -12.09587 -11.98183 -11.91441 -11.83970 -11.80023 -11.48808 -11.23437 -10.81074 -10.63191 -10.36511 -10.06850 -1.16014 -0.41965 0.30352 0.45538 0.84678 1.06199 1.33543 1.42928 1.48539 1.61792 1.67446 1.90933 1.97785 2.07607 2.98702 3.11414 3.23061 3.42978 3.50209 3.60506 3.72778 3.78521 3.90651 3.90734 4.02222 4.17454 4.23943 4.32871 4.34229 4.40522 4.42533 4.43911 4.52147 4.57092 4.61341 4.66380 4.66492 4.80437 4.82825 4.91093 4.92090 5.01677 5.13651 5.18691 5.26788 5.29404 5.34550 5.41816 5.61105 6.44738 6.75444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.372 4.372 3 C -0.138 4.138 4 C -0.136 4.136 5 Si 1.294 2.706 6 C -0.513 4.513 7 C -0.517 4.517 8 O -0.645 6.645 9 C 0.243 3.757 10 O -0.286 6.286 11 C 0.198 3.802 12 C -0.193 4.193 13 C -0.010 4.010 14 C -0.074 4.074 15 N 0.032 4.968 16 O -0.158 6.158 17 O -0.160 6.160 18 C -0.023 4.023 19 C -0.143 4.143 20 C -0.081 4.081 21 O -0.532 6.532 22 Si 0.998 3.002 23 H -0.243 1.243 24 H -0.244 1.244 25 H -0.245 1.245 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.087 0.913 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 6.114 5.310 8.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.416 4.416 3 C -0.195 4.195 4 C -0.193 4.193 5 Si 1.427 2.573 6 C -0.616 4.616 7 C -0.619 4.619 8 O -0.605 6.605 9 C 0.131 3.869 10 O -0.199 6.199 11 C 0.151 3.849 12 C -0.213 4.213 13 C -0.029 4.029 14 C -0.157 4.157 15 N 0.551 4.449 16 O -0.374 6.374 17 O -0.376 6.376 18 C -0.041 4.041 19 C -0.145 4.145 20 C -0.189 4.189 21 O -0.338 6.338 22 Si 0.816 3.184 23 H -0.166 1.166 24 H -0.168 1.168 25 H -0.169 1.169 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.178 0.822 46 H 0.105 0.895 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.505 4.820 5.657 7.450 hybrid contribution 0.811 1.782 -0.226 1.971 sum 0.306 6.602 5.431 8.554 Atomic orbital electron populations 1.21527 0.93572 1.02102 1.02065 1.25761 1.00884 1.02712 1.12253 1.21569 1.00823 0.94704 1.02429 1.21533 1.00619 1.00205 0.96937 0.76556 0.62947 0.51990 0.65809 1.27033 1.07476 1.09971 1.17103 1.27085 1.24555 1.05679 1.04596 1.85330 1.80048 1.46824 1.48293 1.23628 0.96697 0.77660 0.88934 1.86292 1.58018 1.22069 1.53538 1.19071 0.89427 0.89263 0.87160 1.21310 0.98555 1.01876 0.99514 1.20886 0.97663 0.89594 0.94807 1.20899 1.02331 0.92450 1.00068 1.43475 0.99823 1.01325 1.00245 1.94554 1.19280 1.80401 1.43144 1.94569 1.66838 1.03394 1.72772 1.20839 0.91346 1.01236 0.90729 1.19649 1.01397 0.91863 1.01579 1.25239 0.82922 1.13040 0.97742 1.86728 1.34248 1.25952 1.86834 0.84672 0.81607 0.69969 0.82113 1.16632 1.16766 1.16865 0.92574 0.92546 0.92150 0.92426 0.92220 0.92402 0.92273 0.92481 0.92613 0.91372 0.90136 0.90405 0.90563 0.89894 0.91358 0.86266 0.91257 0.82728 0.82182 0.82222 0.89533 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.23 7.85 37.16 0.29 0.52 16 2 C -0.37 0.90 0.53 -90.62 -0.05 0.85 16 3 C -0.14 0.35 7.85 37.16 0.29 0.64 16 4 C -0.14 0.23 7.85 37.16 0.29 0.53 16 5 Si 1.29 -5.39 8.45 -169.99 -1.44 -6.83 16 6 C -0.51 1.94 8.50 101.05 0.86 2.80 16 7 C -0.52 2.12 8.50 101.05 0.86 2.98 16 8 O -0.65 2.02 8.04 -59.04 -0.47 1.54 16 9 C 0.24 -1.04 5.42 101.05 0.55 -0.49 16 10 O -0.29 0.64 9.31 -43.23 -0.40 0.24 16 11 C 0.20 -0.20 6.56 -39.22 -0.26 -0.46 16 12 C -0.19 0.33 8.78 -39.43 -0.35 -0.01 16 13 C -0.01 0.00 9.55 -39.61 -0.38 -0.37 16 14 C -0.07 -0.15 6.85 -79.93 -0.55 -0.70 16 15 N 0.03 0.15 4.45 33.97 0.15 0.30 16 16 O -0.16 -0.83 18.44 -29.46 -0.54 -1.37 16 17 O -0.16 -0.93 18.44 -29.46 -0.54 -1.47 16 18 C -0.02 -0.03 8.16 -39.60 -0.32 -0.35 16 19 C -0.14 0.00 5.28 -104.47 -0.55 -0.55 16 20 C -0.08 0.05 2.33 36.01 0.08 0.13 16 21 O -0.53 -0.27 12.65 -35.23 -0.45 -0.71 16 22 Si 1.00 -0.05 25.74 -169.99 -4.37 -4.43 16 23 H -0.24 0.11 7.11 56.52 0.40 0.51 16 24 H -0.24 -0.25 6.74 56.52 0.38 0.13 16 25 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 26 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 27 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.06 -0.08 7.97 -51.93 -0.41 -0.49 16 29 H 0.06 -0.18 7.79 -51.93 -0.40 -0.59 16 30 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 31 H 0.06 -0.18 7.79 -51.93 -0.40 -0.59 16 32 H 0.06 -0.08 7.97 -51.93 -0.41 -0.49 16 33 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.05 -0.14 7.79 -51.93 -0.40 -0.54 16 35 H 0.07 -0.31 7.48 -51.93 -0.39 -0.70 16 36 H 0.08 -0.30 7.79 -51.93 -0.40 -0.70 16 37 H 0.08 -0.25 7.79 -51.93 -0.40 -0.66 16 38 H 0.08 -0.30 7.79 -51.93 -0.40 -0.70 16 39 H 0.08 -0.32 7.79 -51.93 -0.40 -0.73 16 40 H 0.07 -0.33 7.48 -51.93 -0.39 -0.72 16 41 H 0.12 -0.80 7.21 -51.93 -0.37 -1.17 16 42 H 0.07 -0.44 5.77 -51.93 -0.30 -0.74 16 43 H 0.16 -0.63 5.86 -52.48 -0.31 -0.94 16 44 H 0.16 -0.30 7.60 -52.49 -0.40 -0.70 16 45 H 0.16 0.15 4.43 -52.49 -0.23 -0.08 16 46 H 0.09 -0.20 7.83 -51.93 -0.41 -0.61 16 47 H 0.37 -0.64 8.61 45.56 0.39 -0.25 16 LS Contribution 385.44 15.07 5.81 5.81 Total: 0.00 -5.93 385.44 -8.04 -13.98 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -6.55 Total: -12.57 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 0.77 Total: 5.51 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: 0.15 Total: 0.30 kcal Atomic # 8 Polarization: 0.63 SS G_CDS: -2.41 Total: -1.78 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: -5.81 Total: -11.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -5.93 -8.04 -13.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_14468166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.015 kcal (2) G-P(sol) polarization free energy of solvation -5.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds