Wall clock time and date at job start Tue Mar 9 2021 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 C 1.53005 * 109.46789 * 239.99861 * 2 1 3 5 5 Si 1.86299 * 109.47013 * 119.99959 * 2 1 3 6 6 C 1.86292 * 109.47347 * 300.00126 * 5 2 1 7 7 C 1.86301 * 109.47036 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47061 * 59.99935 * 5 2 1 9 9 C 1.42903 * 114.00240 * 179.97438 * 8 5 2 10 10 C 1.52996 * 109.47497 * 179.97438 * 9 8 5 11 11 C 1.52999 * 109.47178 * 180.02562 * 10 9 8 12 12 O 1.42905 * 109.47040 * 179.97438 * 11 10 9 13 13 C 1.35896 * 116.99924 * 180.02562 * 12 11 10 14 14 C 1.38718 * 120.05682 * 0.02717 * 13 12 11 15 15 C 1.38164 * 119.94468 * 179.97438 * 14 13 12 16 16 C 1.38241 * 120.05310 * 359.97234 * 15 14 13 17 17 N 1.48014 * 119.94280 * 180.02562 * 16 15 14 18 18 O 1.21796 * 119.99599 * 0.02562 * 17 16 15 19 19 O 1.21792 * 119.99838 * 180.02562 * 17 16 15 20 20 C 1.38290 * 120.11702 * 359.77448 * 16 15 14 21 21 C 1.38127 * 120.04900 * 0.50485 * 20 16 15 22 22 C 1.50701 * 120.02588 * 179.74781 * 21 20 16 23 23 O 1.42895 * 109.47079 * 254.72892 * 22 21 20 24 24 Si 1.86301 * 109.47149 * 14.72387 * 22 21 20 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 H 1.08998 * 109.47022 * 300.00130 * 1 2 3 29 29 H 1.09004 * 109.47283 * 59.99880 * 1 2 3 30 30 H 1.08999 * 109.47592 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47310 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46986 * 300.00302 * 3 2 1 33 33 H 1.08998 * 109.47124 * 59.99933 * 3 2 1 34 34 H 1.08995 * 109.47204 * 299.99730 * 4 2 1 35 35 H 1.08994 * 109.47022 * 60.00621 * 4 2 1 36 36 H 1.09004 * 109.46752 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.47295 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.46790 * 300.00036 * 6 5 2 39 39 H 1.08998 * 109.47458 * 59.99564 * 6 5 2 40 40 H 1.08998 * 109.47357 * 300.00131 * 7 5 2 41 41 H 1.09003 * 109.46542 * 60.00564 * 7 5 2 42 42 H 1.09008 * 109.46914 * 179.97438 * 7 5 2 43 43 H 1.09002 * 109.46669 * 59.99752 * 9 8 5 44 44 H 1.08996 * 109.47004 * 300.00409 * 9 8 5 45 45 H 1.08998 * 109.46865 * 60.00431 * 10 9 8 46 46 H 1.09001 * 109.47054 * 300.00544 * 10 9 8 47 47 H 1.09007 * 109.47076 * 60.00529 * 11 10 9 48 48 H 1.08996 * 109.46999 * 300.00276 * 11 10 9 49 49 H 1.08003 * 120.02391 * 359.97438 * 14 13 12 50 50 H 1.07997 * 119.96824 * 179.97438 * 15 14 13 51 51 H 1.07999 * 119.97641 * 180.25013 * 20 16 15 52 52 H 1.09001 * 109.47380 * 134.72289 * 22 21 20 53 53 H 0.96708 * 113.99763 * 299.99687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1509 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5208 8 8 1.6072 -2.4159 1.5211 9 6 2.0293 -3.1817 2.6514 10 6 1.4634 -4.5994 2.5472 11 6 1.9148 -5.4190 3.7577 12 8 1.3857 -6.7430 3.6606 13 6 1.6942 -7.6058 4.6641 14 6 2.4893 -7.1868 5.7207 15 6 2.8012 -8.0658 6.7401 16 6 2.3210 -9.3617 6.7078 17 7 2.6561 -10.3012 7.8014 18 8 3.3540 -9.9320 8.7288 19 8 2.2340 -11.4433 7.7737 20 6 1.5239 -9.7804 5.6582 21 6 1.2140 -8.9072 4.6338 22 6 0.3500 -9.3657 3.4874 23 8 1.1632 -9.5712 2.3306 24 14 -0.4932 -10.9626 3.9453 25 1 -1.3384 -10.7491 5.1477 26 1 0.5311 -11.9972 4.2378 27 1 -1.3442 -11.4148 2.8155 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.8936 -0.5136 3.9322 38 1 1.8933 1.0276 3.0422 39 1 0.4400 0.0000 3.0422 40 1 4.3769 -1.3930 0.6308 41 1 4.3776 0.1487 1.5206 42 1 4.3773 -1.3924 2.4110 43 1 1.6652 -2.7118 3.5651 44 1 3.1181 -3.2256 2.6745 45 1 1.8272 -5.0695 1.6335 46 1 0.3745 -4.5551 2.5243 47 1 1.5506 -4.9487 4.6712 48 1 3.0036 -5.4632 3.7809 49 1 2.8643 -6.1742 5.7465 50 1 3.4205 -7.7401 7.5627 51 1 1.1467 -10.7922 5.6373 52 1 -0.4020 -8.6063 3.2728 53 1 1.6334 -8.7797 2.0347 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_29409_18527724.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:15:36 Heat of formation + Delta-G solvation = -149.154120 kcal Electronic energy + Delta-G solvation = -31693.631332 eV Core-core repulsion = 27271.406317 eV Total energy + Delta-G solvation = -4422.225015 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.32842 -41.82873 -39.27605 -38.09163 -37.79098 -37.67001 -36.81656 -33.84042 -33.12056 -32.08970 -29.36077 -29.04238 -27.85029 -27.75557 -27.36431 -27.14144 -26.51333 -23.97073 -23.02296 -22.27268 -20.41149 -20.28764 -19.85282 -19.55557 -18.66671 -18.31635 -17.87735 -17.60341 -17.25492 -16.55413 -16.23428 -15.97548 -15.87918 -15.69447 -15.29826 -14.88895 -14.85991 -14.71683 -14.63970 -14.46490 -14.12262 -13.93327 -13.62378 -13.42842 -13.33773 -13.26409 -13.12774 -12.94683 -12.94138 -12.85253 -12.77583 -12.45187 -12.39213 -12.36938 -12.34714 -12.29017 -12.01954 -12.01539 -11.69021 -11.68786 -11.46251 -11.32972 -11.26727 -11.20261 -10.58490 -10.28260 -10.04377 -9.92269 -1.32274 -0.35181 0.16757 0.31813 1.06113 1.37004 1.40623 1.42845 1.79020 1.86380 1.87295 2.01142 2.15613 2.51600 3.04374 3.22207 3.41816 3.60949 3.75393 3.83700 3.92669 3.94519 4.07302 4.12905 4.13374 4.15577 4.27065 4.38636 4.38687 4.46856 4.48868 4.55683 4.62477 4.64209 4.76684 4.77408 4.80451 4.81851 4.83163 4.83550 4.91227 5.00830 5.09160 5.09863 5.09897 5.10518 5.22179 5.24502 5.36349 5.41969 5.45588 5.58537 5.63994 5.67276 5.92623 6.39511 6.59070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.389 4.389 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.327 2.673 6 C -0.520 4.520 7 C -0.519 4.519 8 O -0.640 6.640 9 C 0.075 3.925 10 C -0.122 4.122 11 C 0.042 3.958 12 O -0.300 6.300 13 C 0.210 3.790 14 C -0.192 4.192 15 C -0.002 4.002 16 C -0.098 4.098 17 N 0.035 4.965 18 O -0.165 6.165 19 O -0.209 6.209 20 C -0.033 4.033 21 C -0.152 4.152 22 C -0.073 4.073 23 O -0.546 6.546 24 Si 1.006 2.994 25 H -0.241 1.241 26 H -0.267 1.267 27 H -0.258 1.258 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.195 0.805 50 H 0.177 0.823 51 H 0.150 0.850 52 H 0.106 0.894 53 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 8.835 -2.047 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.431 4.431 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.456 2.544 6 C -0.621 4.621 7 C -0.621 4.621 8 O -0.600 6.600 9 C 0.000 4.000 10 C -0.160 4.160 11 C -0.031 4.031 12 O -0.211 6.211 13 C 0.162 3.838 14 C -0.211 4.211 15 C -0.021 4.021 16 C -0.182 4.182 17 N 0.547 4.453 18 O -0.383 6.383 19 O -0.414 6.414 20 C -0.052 4.052 21 C -0.154 4.154 22 C -0.182 4.182 23 O -0.353 6.353 24 Si 0.828 3.172 25 H -0.164 1.164 26 H -0.192 1.192 27 H -0.182 1.182 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.212 0.788 50 H 0.194 0.806 51 H 0.167 0.833 52 H 0.124 0.876 53 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.509 7.677 -2.657 8.140 hybrid contribution 0.819 1.086 0.246 1.382 sum 0.310 8.763 -2.411 9.094 Atomic orbital electron populations 1.21541 0.94391 1.01772 1.01716 1.26037 1.00336 1.03035 1.13659 1.21603 1.01276 0.94871 1.02094 1.21542 1.01008 1.00046 0.96826 0.75987 0.62322 0.52556 0.63563 1.27119 1.06835 1.09836 1.18325 1.27120 1.25285 1.04973 1.04726 1.85330 1.79676 1.46563 1.48384 1.22060 0.99392 0.91132 0.87407 1.21493 1.03044 0.93584 0.97864 1.23242 1.00574 0.78414 1.00907 1.86097 1.69734 1.23430 1.41880 1.19091 0.89325 0.88515 0.86914 1.21685 1.02662 1.03188 0.93543 1.21193 0.93639 0.88289 0.98980 1.21069 1.12375 0.92415 0.92384 1.43880 0.98084 1.01597 1.01698 1.94508 1.34658 1.81902 1.27202 1.94560 1.56988 1.05000 1.84896 1.20859 0.92922 1.00900 0.90522 1.19619 1.05101 0.91978 0.98660 1.25043 0.95771 1.12937 0.84464 1.86718 1.64579 1.40248 1.43791 0.84542 0.78339 0.74344 0.79964 1.16432 1.19240 1.18228 0.92086 0.93683 0.92409 0.91800 0.93450 0.91802 0.92401 0.93681 0.92081 0.90528 0.90652 0.91268 0.91251 0.90661 0.90522 0.90628 0.90540 0.90032 0.90309 0.88622 0.88453 0.78792 0.80605 0.83292 0.87588 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.24 7.85 71.98 0.56 0.81 16 2 C -0.39 1.20 0.53 -10.79 -0.01 1.19 16 3 C -0.14 0.47 7.85 71.98 0.56 1.03 16 4 C -0.14 0.24 7.85 71.98 0.56 0.81 16 5 Si 1.33 -8.98 8.45 68.60 0.58 -8.40 16 6 C -0.52 3.29 8.50 113.37 0.96 4.26 16 7 C -0.52 3.30 8.50 113.37 0.96 4.26 16 8 O -0.64 3.46 8.56 -148.98 -1.28 2.19 16 9 C 0.08 -0.80 5.12 71.98 0.37 -0.43 16 10 C -0.12 1.30 5.95 30.59 0.18 1.48 16 11 C 0.04 -0.59 4.74 71.98 0.34 -0.24 16 12 O -0.30 2.61 9.05 -92.38 -0.84 1.77 16 13 C 0.21 -1.30 6.62 22.51 0.15 -1.15 16 14 C -0.19 1.74 9.04 22.37 0.20 1.94 16 15 C 0.00 0.01 9.55 22.25 0.21 0.22 16 16 C -0.10 -0.34 6.85 36.39 0.25 -0.10 16 17 N 0.04 0.37 4.45 -46.43 -0.21 0.16 16 18 O -0.16 -1.82 18.44 18.89 0.35 -1.47 16 19 O -0.21 -2.98 18.44 18.90 0.35 -2.63 16 20 C -0.03 -0.09 8.16 22.26 0.18 0.10 16 21 C -0.15 0.24 5.28 -19.77 -0.10 0.14 16 22 C -0.07 0.14 2.33 71.24 0.17 0.30 16 23 O -0.55 0.13 12.65 -148.98 -1.89 -1.75 16 24 Si 1.01 1.18 25.74 68.60 1.77 2.95 16 25 H -0.24 -0.13 7.11 99.48 0.71 0.57 16 26 H -0.27 -1.26 6.74 99.48 0.67 -0.59 16 27 H -0.26 -0.78 7.11 99.48 0.71 -0.07 16 28 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 29 H 0.04 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.06 -0.08 7.97 -2.39 -0.02 -0.10 16 31 H 0.06 -0.31 7.79 -2.39 -0.02 -0.33 16 32 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 33 H 0.06 -0.31 7.79 -2.39 -0.02 -0.33 16 34 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 35 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 37 H 0.08 -0.64 7.48 -2.39 -0.02 -0.66 16 38 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 39 H 0.07 -0.36 7.79 -2.39 -0.02 -0.37 16 40 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 41 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 42 H 0.08 -0.64 7.48 -2.38 -0.02 -0.66 16 43 H 0.08 -1.06 7.21 -2.39 -0.02 -1.07 16 44 H 0.08 -1.08 7.21 -2.39 -0.02 -1.09 16 45 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.10 -1.66 7.66 -2.38 -0.02 -1.68 16 48 H 0.10 -1.71 7.66 -2.39 -0.02 -1.73 16 49 H 0.20 -3.30 6.30 -2.91 -0.02 -3.32 16 50 H 0.18 -1.27 7.60 -2.91 -0.02 -1.30 16 51 H 0.15 0.60 4.43 -2.91 -0.01 0.58 16 52 H 0.11 -0.60 7.83 -2.39 -0.02 -0.62 16 53 H 0.38 -2.32 8.61 -74.05 -0.64 -2.96 16 Total: 0.00 -17.12 429.91 5.39 -11.73 By element: Atomic # 1 Polarization: -20.15 SS G_CDS: 0.98 Total: -19.17 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.56 Total: 14.62 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -0.21 Total: 0.16 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: -3.30 Total: -1.90 kcal Atomic # 14 Polarization: -7.79 SS G_CDS: 2.35 Total: -5.45 kcal Total: -17.12 5.39 -11.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_29409_18527724.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.423 kcal (2) G-P(sol) polarization free energy of solvation -17.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds