Wall clock time and date at job start Tue Mar 9 2021 18:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46789 * 2 1 4 4 C 1.53000 * 109.46896 * 240.00252 * 2 1 3 5 5 Si 1.86300 * 109.47114 * 120.00159 * 2 1 3 6 6 C 1.86298 * 109.47067 * 300.00059 * 5 2 1 7 7 C 1.86299 * 109.47021 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.47022 * 60.00436 * 5 2 1 9 9 C 1.42900 * 113.99844 * 180.02562 * 8 5 2 10 10 O 1.42907 * 109.47083 * 179.97438 * 9 8 5 11 11 C 1.35917 * 116.99980 * 74.99513 * 10 9 8 12 12 C 1.38698 * 120.04650 * 0.02562 * 11 10 9 13 13 C 1.38162 * 119.95830 * 179.97438 * 12 11 10 14 14 C 1.38347 * 120.04376 * 0.02562 * 13 12 11 15 15 Cl 1.73592 * 119.95958 * 180.02562 * 14 13 12 16 16 C 1.38385 * 120.08324 * 359.72200 * 14 13 12 17 17 C 1.38128 * 120.04137 * 0.55707 * 16 14 13 18 18 C 1.50701 * 120.02180 * 179.72204 * 17 16 14 19 19 O 1.42895 * 109.47079 * 254.72821 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 14.72316 * 18 17 16 21 21 H 1.48506 * 109.47302 * 59.99966 * 20 18 17 22 22 H 1.48503 * 109.47334 * 300.00099 * 20 18 17 23 23 H 1.48500 * 109.47376 * 180.02562 * 20 18 17 24 24 H 1.08994 * 109.46736 * 299.99668 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00046 * 1 2 3 26 26 H 1.08999 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46571 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47568 * 300.00206 * 3 2 1 29 29 H 1.09004 * 109.47224 * 60.00717 * 3 2 1 30 30 H 1.08999 * 109.47351 * 299.99708 * 4 2 1 31 31 H 1.08996 * 109.47049 * 60.00046 * 4 2 1 32 32 H 1.09001 * 109.46799 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46566 * 180.02562 * 6 5 2 34 34 H 1.08998 * 109.47213 * 299.99585 * 6 5 2 35 35 H 1.09001 * 109.47105 * 60.00437 * 6 5 2 36 36 H 1.09005 * 109.47444 * 300.00395 * 7 5 2 37 37 H 1.08999 * 109.46895 * 60.00138 * 7 5 2 38 38 H 1.08996 * 109.47141 * 180.02562 * 7 5 2 39 39 H 1.09000 * 109.47404 * 59.99550 * 9 8 5 40 40 H 1.08999 * 109.46555 * 299.99269 * 9 8 5 41 41 H 1.08003 * 120.01766 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.98283 * 180.02562 * 13 12 11 43 43 H 1.07999 * 119.97984 * 180.27588 * 16 14 13 44 44 H 1.09001 * 109.47380 * 134.72218 * 18 17 16 45 45 H 0.96708 * 113.99763 * 299.99687 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5207 8 8 1.6075 -2.4160 1.5210 9 6 2.0287 -3.1814 2.6518 10 8 1.5003 -4.5056 2.5543 11 6 2.0882 -5.3401 1.6569 12 6 3.1518 -4.8936 0.8867 13 6 3.7485 -5.7435 -0.0246 14 6 3.2853 -7.0391 -0.1696 15 17 4.0370 -8.1053 -1.3148 16 6 2.2276 -7.4880 0.6015 17 6 1.6248 -6.6395 1.5096 18 6 0.4689 -7.1270 2.3447 19 8 -0.7482 -6.5691 1.8453 20 14 0.3810 -8.9859 2.2587 21 1 1.6459 -9.5658 2.7776 22 1 0.1852 -9.4075 0.8483 23 1 -0.7583 -9.4663 3.0811 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.8938 -0.5138 3.9322 34 1 1.8934 1.0275 3.0423 35 1 0.4400 -0.0002 3.0423 36 1 4.3771 -1.3930 0.6306 37 1 4.3777 0.1486 1.5205 38 1 4.3774 -1.3932 2.4104 39 1 1.6639 -2.7114 3.5651 40 1 3.1175 -3.2252 2.6756 41 1 3.5134 -3.8821 0.9994 42 1 4.5770 -5.3964 -0.6241 43 1 1.8703 -8.5011 0.4901 44 1 0.6126 -6.8176 3.3800 45 1 -0.7730 -5.6024 1.8603 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_508404_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:16:28 Heat of formation + Delta-G solvation = -148.770510 kcal Electronic energy + Delta-G solvation = -25432.747300 eV Core-core repulsion = 21792.830801 eV Total energy + Delta-G solvation = -3639.916500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62901 -39.27035 -37.86906 -37.15775 -36.84833 -36.74319 -32.87996 -30.98408 -29.44267 -29.07594 -27.84681 -27.39232 -27.15978 -26.74602 -23.45310 -22.75322 -20.47176 -19.55044 -18.46350 -18.32227 -18.01941 -17.16589 -16.64934 -16.00604 -15.97260 -15.68148 -15.33704 -15.23384 -14.87757 -14.78400 -14.58300 -14.35711 -14.12000 -14.02752 -13.62755 -13.46676 -13.39177 -13.33912 -13.18337 -12.98323 -12.95003 -12.92879 -12.40284 -12.26441 -12.14116 -12.00296 -11.92831 -11.85790 -11.78244 -11.58999 -11.54630 -11.19157 -11.05267 -10.41063 -10.16156 -10.08676 -9.26992 0.01273 0.05133 1.08832 1.17514 1.31473 1.47906 1.50637 1.69139 1.94095 2.06914 2.10755 2.41638 2.47912 3.45413 3.60948 3.78505 3.89983 4.00755 4.07198 4.10638 4.11408 4.15394 4.24610 4.44358 4.45179 4.63445 4.72783 4.74368 4.78522 4.78874 4.81627 4.82412 4.90936 4.99712 5.04203 5.07689 5.08812 5.09123 5.11545 5.25874 5.36220 5.39252 5.40625 5.45646 5.60598 5.65953 6.13043 6.64946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.385 4.385 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.330 2.670 6 C -0.522 4.522 7 C -0.522 4.522 8 O -0.660 6.660 9 C 0.230 3.770 10 O -0.302 6.302 11 C 0.146 3.854 12 C -0.181 4.181 13 C -0.069 4.069 14 C -0.076 4.076 15 Cl -0.072 7.072 16 C -0.091 4.091 17 C -0.143 4.143 18 C -0.082 4.082 19 O -0.550 6.550 20 Si 1.022 2.978 21 H -0.237 1.237 22 H -0.265 1.265 23 H -0.267 1.267 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 4.271 3.600 6.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.427 4.427 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.461 2.539 6 C -0.624 4.624 7 C -0.624 4.624 8 O -0.621 6.621 9 C 0.118 3.882 10 O -0.216 6.216 11 C 0.100 3.900 12 C -0.199 4.199 13 C -0.087 4.087 14 C -0.103 4.103 15 Cl -0.043 7.043 16 C -0.109 4.109 17 C -0.144 4.144 18 C -0.190 4.190 19 O -0.357 6.357 20 Si 0.843 3.157 21 H -0.160 1.160 22 H -0.190 1.190 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.103 0.897 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.158 0.842 44 H 0.113 0.887 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.652 2.455 3.363 4.936 hybrid contribution 0.404 1.692 -0.432 1.792 sum 3.055 4.147 2.931 5.927 Atomic orbital electron populations 1.21547 0.94511 1.01628 1.01806 1.26003 1.00222 1.03128 1.13365 1.21612 1.01429 0.94637 1.02205 1.21543 1.01187 0.99820 0.96871 0.75886 0.62670 0.51288 0.64065 1.27116 1.07099 1.10180 1.17962 1.27113 1.24401 1.05772 1.05136 1.85320 1.80378 1.47220 1.49133 1.23981 0.97871 0.77314 0.89005 1.86232 1.58812 1.22503 1.54079 1.18875 0.91691 0.89513 0.89914 1.21484 0.97724 1.01996 0.98722 1.21146 0.99572 0.90697 0.97306 1.20848 0.98842 0.93112 0.97450 1.98381 1.81347 1.65337 1.59246 1.20953 0.94919 1.00506 0.94557 1.19650 1.00782 0.92618 1.01382 1.25214 0.82994 1.12335 0.98503 1.86660 1.35294 1.26622 1.87174 0.84371 0.80596 0.70697 0.79991 1.16007 1.19016 1.19121 0.91927 0.93668 0.92739 0.91522 0.93409 0.91682 0.92818 0.93707 0.91699 0.90298 0.90146 0.91067 0.90670 0.89922 0.90272 0.84600 0.89688 0.82169 0.82608 0.84205 0.88746 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.12 7.85 71.98 0.56 0.69 16 2 C -0.39 1.15 0.53 -10.79 -0.01 1.14 16 3 C -0.14 0.51 7.85 71.98 0.56 1.07 16 4 C -0.14 0.19 7.85 71.98 0.56 0.75 16 5 Si 1.33 -9.30 8.45 68.60 0.58 -8.72 16 6 C -0.52 3.46 8.50 113.37 0.96 4.43 16 7 C -0.52 4.02 8.50 113.37 0.96 4.98 16 8 O -0.66 2.65 8.04 -126.21 -1.01 1.63 16 9 C 0.23 -1.46 5.42 113.37 0.61 -0.85 16 10 O -0.30 0.31 9.30 -69.85 -0.65 -0.34 16 11 C 0.15 0.21 6.56 22.50 0.15 0.36 16 12 C -0.18 0.13 8.78 22.36 0.20 0.32 16 13 C -0.07 -0.03 9.82 22.28 0.22 0.19 16 14 C -0.08 -0.28 6.32 22.33 0.14 -0.14 16 15 Cl -0.07 -0.30 28.95 -2.72 -0.08 -0.38 16 16 C -0.09 -0.39 8.44 22.28 0.19 -0.21 16 17 C -0.14 -0.48 5.28 -19.77 -0.10 -0.59 16 18 C -0.08 -0.19 2.33 71.24 0.17 -0.03 16 19 O -0.55 -2.61 12.65 -148.98 -1.89 -4.49 16 20 Si 1.02 2.63 25.74 68.60 1.77 4.39 16 21 H -0.24 -0.21 7.11 99.48 0.71 0.50 16 22 H -0.27 -1.29 6.74 99.48 0.67 -0.62 16 23 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 24 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 25 H 0.04 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.05 0.01 7.97 -2.39 -0.02 -0.01 16 27 H 0.07 -0.37 7.79 -2.38 -0.02 -0.39 16 28 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 -0.34 7.79 -2.39 -0.02 -0.36 16 30 H 0.05 0.00 7.97 -2.39 -0.02 -0.02 16 31 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 33 H 0.08 -0.69 7.48 -2.39 -0.02 -0.71 16 34 H 0.08 -0.54 7.79 -2.39 -0.02 -0.56 16 35 H 0.07 -0.37 7.79 -2.39 -0.02 -0.38 16 36 H 0.07 -0.54 7.79 -2.38 -0.02 -0.56 16 37 H 0.08 -0.63 7.79 -2.39 -0.02 -0.65 16 38 H 0.08 -0.77 7.48 -2.39 -0.02 -0.78 16 39 H 0.14 -1.58 7.21 -2.39 -0.02 -1.60 16 40 H 0.09 -0.92 5.77 -2.39 -0.01 -0.93 16 41 H 0.16 -0.87 5.86 -2.91 -0.02 -0.89 16 42 H 0.16 -0.56 8.06 -2.91 -0.02 -0.59 16 43 H 0.14 0.48 4.89 -2.91 -0.01 0.47 16 44 H 0.09 -0.09 7.83 -2.39 -0.02 -0.11 16 45 H 0.38 0.28 8.61 -74.05 -0.64 -0.35 16 Total: 0.00 -10.29 373.97 4.96 -5.32 By element: Atomic # 1 Polarization: -10.62 SS G_CDS: 1.06 Total: -9.55 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 5.18 Total: 12.14 kcal Atomic # 8 Polarization: 0.35 SS G_CDS: -3.55 Total: -3.20 kcal Atomic # 14 Polarization: -6.67 SS G_CDS: 2.35 Total: -4.32 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -10.29 4.96 -5.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508404_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.448 kcal (2) G-P(sol) polarization free energy of solvation -10.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds