Wall clock time and date at job start Tue Mar 9 2021 18:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47591 * 2 1 4 4 C 1.52998 * 109.46986 * 239.99883 * 2 1 3 5 5 Si 1.86302 * 109.47055 * 120.00192 * 2 1 3 6 6 C 1.86298 * 109.47155 * 299.99740 * 5 2 1 7 7 C 1.86309 * 109.47342 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47137 * 59.99771 * 5 2 1 9 9 C 1.42904 * 114.00022 * 179.97438 * 8 5 2 10 10 C 1.52997 * 109.47248 * 180.02562 * 9 8 5 11 11 O 1.42896 * 109.47229 * 64.99697 * 10 9 8 12 12 C 1.42903 * 114.00000 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47049 * 180.02562 * 12 11 10 14 14 O 1.42907 * 109.47407 * 65.00143 * 13 12 11 15 15 C 1.35917 * 116.99980 * 180.02562 * 14 13 12 16 16 C 1.38698 * 120.04650 * 0.02562 * 15 14 13 17 17 C 1.38162 * 119.95830 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.04376 * 0.02562 * 17 16 15 19 19 Cl 1.73592 * 119.95958 * 180.02562 * 18 17 16 20 20 C 1.38385 * 120.08324 * 359.72200 * 18 17 16 21 21 C 1.38128 * 120.04137 * 0.55707 * 20 18 17 22 22 C 1.50701 * 120.02180 * 179.72204 * 21 20 18 23 23 O 1.42895 * 109.47079 * 254.72821 * 22 21 20 24 24 Si 1.86301 * 109.47149 * 14.72316 * 22 21 20 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 H 1.09003 * 109.46957 * 299.99657 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99791 * 1 2 3 30 30 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47081 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47022 * 300.00314 * 3 2 1 33 33 H 1.09003 * 109.46690 * 60.00180 * 3 2 1 34 34 H 1.08998 * 109.47270 * 300.00117 * 4 2 1 35 35 H 1.09001 * 109.47413 * 60.00113 * 4 2 1 36 36 H 1.08999 * 109.47249 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47072 * 180.02562 * 6 5 2 38 38 H 1.09003 * 109.47142 * 299.99691 * 6 5 2 39 39 H 1.09000 * 109.47332 * 60.00245 * 6 5 2 40 40 H 1.09003 * 109.47125 * 300.00430 * 7 5 2 41 41 H 1.09005 * 109.46727 * 59.99553 * 7 5 2 42 42 H 1.08995 * 109.46851 * 179.97438 * 7 5 2 43 43 H 1.08995 * 109.46946 * 59.99800 * 9 8 5 44 44 H 1.08998 * 109.47346 * 300.00121 * 9 8 5 45 45 H 1.08999 * 109.47178 * 304.99779 * 10 9 8 46 46 H 1.08998 * 109.46862 * 185.00094 * 10 9 8 47 47 H 1.08999 * 109.46821 * 60.00735 * 12 11 10 48 48 H 1.08996 * 109.47050 * 300.00408 * 12 11 10 49 49 H 1.09002 * 109.47610 * 305.00513 * 13 12 11 50 50 H 1.08996 * 109.47294 * 185.00321 * 13 12 11 51 51 H 1.08003 * 120.01766 * 359.97438 * 16 15 14 52 52 H 1.07999 * 119.98283 * 180.02562 * 17 16 15 53 53 H 1.07999 * 119.97984 * 180.27588 * 20 18 17 54 54 H 1.09001 * 109.47380 * 134.72218 * 22 21 20 55 55 H 0.96708 * 113.99763 * 299.99687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6072 -2.4160 1.5211 9 6 2.0293 -3.1818 2.6514 10 6 1.4644 -4.5998 2.5465 11 8 2.0327 -5.2562 1.4115 12 6 1.5695 -6.5947 1.2219 13 6 2.2408 -7.1963 -0.0143 14 8 3.6465 -7.3118 0.2156 15 6 4.3959 -7.8317 -0.7921 16 6 3.7907 -8.2219 -1.9775 17 6 4.5543 -8.7497 -3.0009 18 6 5.9217 -8.8895 -2.8436 19 17 6.8791 -9.5523 -4.1310 20 6 6.5281 -8.4959 -1.6635 21 6 5.7672 -7.9732 -0.6360 22 6 6.4272 -7.5505 0.6512 23 8 6.1482 -8.5146 1.6684 24 14 8.2688 -7.4330 0.3955 25 1 8.5589 -6.4312 -0.6617 26 1 8.7965 -8.7576 -0.0197 27 1 8.9192 -7.0171 1.6640 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6765 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.8937 -0.5137 3.9322 38 1 1.8934 1.0276 3.0423 39 1 0.4400 -0.0001 3.0423 40 1 4.3770 -1.3930 0.6308 41 1 4.3777 0.1486 1.5206 42 1 4.3772 -1.3925 2.4110 43 1 1.6653 -2.7119 3.5650 44 1 3.1182 -3.2257 2.6744 45 1 0.3813 -4.5520 2.4339 46 1 1.7115 -5.1571 3.4500 47 1 0.4885 -6.5886 1.0819 48 1 1.8191 -7.1931 2.0980 49 1 2.0653 -6.5497 -0.8741 50 1 1.8224 -8.1834 -0.2108 51 1 2.7232 -8.1133 -2.1005 52 1 4.0836 -9.0533 -3.9242 53 1 7.5962 -8.6017 -1.5442 54 1 6.0399 -6.5783 0.9559 55 1 5.2061 -8.6283 1.8547 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_508404_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:20:34 Heat of formation + Delta-G solvation = -195.544115 kcal Electronic energy + Delta-G solvation = -32850.977232 eV Core-core repulsion = 28423.737427 eV Total energy + Delta-G solvation = -4427.239804 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 390.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55942 -39.44306 -38.68574 -37.83119 -37.36120 -37.00689 -36.81850 -32.98332 -32.10727 -30.64181 -29.62636 -29.16090 -29.05304 -27.83415 -27.37429 -26.83632 -24.88075 -23.42789 -22.88009 -22.53523 -20.40761 -19.52151 -18.42936 -18.11244 -17.92623 -17.66608 -17.15851 -16.61689 -16.48609 -16.22400 -16.03486 -15.73436 -15.51166 -15.43141 -15.30388 -14.84724 -14.78086 -14.58594 -14.57428 -14.18864 -14.07229 -13.92924 -13.53950 -13.40592 -13.36886 -13.24273 -13.16269 -12.95100 -12.92697 -12.82023 -12.76583 -12.46405 -12.40342 -12.29871 -12.19003 -12.13922 -11.88379 -11.78241 -11.69640 -11.63321 -11.48541 -11.23356 -11.16747 -11.07480 -10.52025 -10.28430 -10.18487 -10.04002 -9.21498 0.00107 0.06443 1.09094 1.15192 1.45097 1.46874 1.56180 1.81424 1.89636 2.05120 2.15032 2.39972 2.50860 2.72153 3.44657 3.59887 3.86565 3.88319 4.00033 4.06970 4.12586 4.13201 4.13891 4.18343 4.22388 4.26353 4.36138 4.43860 4.45646 4.50288 4.54193 4.62143 4.63176 4.71103 4.73824 4.76192 4.79790 4.80320 4.82160 4.83803 4.86128 4.94157 5.00226 5.05307 5.09101 5.09351 5.09862 5.20994 5.34390 5.40310 5.41330 5.44765 5.54636 5.60562 5.64952 6.21199 6.33158 6.63207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.314 2.686 6 C -0.515 4.515 7 C -0.520 4.520 8 O -0.634 6.634 9 C 0.074 3.926 10 C 0.055 3.945 11 O -0.399 6.399 12 C 0.058 3.942 13 C 0.053 3.947 14 O -0.311 6.311 15 C 0.148 3.852 16 C -0.192 4.192 17 C -0.064 4.064 18 C -0.080 4.080 19 Cl -0.072 7.072 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.079 4.079 23 O -0.548 6.548 24 Si 1.020 2.980 25 H -0.243 1.243 26 H -0.260 1.260 27 H -0.265 1.265 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.165 0.835 52 H 0.157 0.843 53 H 0.139 0.861 54 H 0.086 0.914 55 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 0.854 2.619 5.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.444 2.556 6 C -0.617 4.617 7 C -0.621 4.621 8 O -0.594 6.594 9 C -0.002 4.002 10 C -0.021 4.021 11 O -0.318 6.318 12 C -0.018 4.018 13 C -0.022 4.022 14 O -0.225 6.225 15 C 0.101 3.899 16 C -0.210 4.210 17 C -0.083 4.083 18 C -0.107 4.107 19 Cl -0.044 7.044 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.187 4.187 23 O -0.355 6.355 24 Si 0.841 3.159 25 H -0.166 1.166 26 H -0.185 1.185 27 H -0.189 1.189 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.123 0.877 51 H 0.183 0.817 52 H 0.174 0.826 53 H 0.157 0.843 54 H 0.104 0.896 55 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.690 0.784 2.309 4.423 hybrid contribution -1.060 0.244 -0.234 1.113 sum -4.750 1.028 2.076 5.285 Atomic orbital electron populations 1.21523 0.94069 1.01750 1.01875 1.25910 1.00538 1.02929 1.13094 1.21603 1.01150 0.94758 1.02271 1.21512 1.00752 0.99945 0.97005 0.76227 0.62105 0.53016 0.64265 1.27058 1.06982 1.09759 1.17903 1.27153 1.26035 1.04673 1.04221 1.85387 1.79210 1.46417 1.48378 1.22314 0.99381 0.90826 0.87634 1.22800 0.98324 0.92012 0.88985 1.87986 1.68496 1.26796 1.48568 1.22691 0.98424 0.83404 0.97311 1.23203 0.77560 1.02066 0.99321 1.86104 1.21178 1.77287 1.37882 1.18899 0.90319 0.92581 0.88094 1.21519 1.02146 1.04564 0.92799 1.21155 0.90946 0.96116 1.00082 1.20841 0.92890 1.05880 0.91075 1.98380 1.72050 1.84454 1.49490 1.20940 1.00661 0.97414 0.91701 1.19619 0.91700 1.05604 0.97904 1.25136 1.13447 0.94675 0.85451 1.86660 1.31075 1.61533 1.56184 0.84396 0.71203 0.80301 0.79997 1.16564 1.18460 1.18939 0.91919 0.93392 0.92545 0.92072 0.93140 0.91633 0.92742 0.93322 0.92562 0.90806 0.90463 0.90878 0.91782 0.90544 0.91196 0.89055 0.91846 0.91716 0.90245 0.89091 0.91236 0.90715 0.87721 0.81711 0.82555 0.84332 0.89595 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.38 -0.03 0.53 -10.80 -0.01 -0.03 16 3 C -0.14 0.11 7.85 71.98 0.56 0.68 16 4 C -0.13 -0.25 7.85 71.98 0.56 0.31 16 5 Si 1.31 -2.52 8.45 68.60 0.58 -1.94 16 6 C -0.52 1.44 8.50 113.37 0.96 2.41 16 7 C -0.52 0.11 8.50 113.37 0.96 1.07 16 8 O -0.63 -0.52 8.52 -144.34 -1.23 -1.76 16 9 C 0.07 -0.19 5.51 71.98 0.40 0.21 16 10 C 0.05 -0.17 6.32 71.98 0.45 0.28 16 11 O -0.40 -0.41 10.27 -135.06 -1.39 -1.80 16 12 C 0.06 -0.29 6.32 71.98 0.45 0.16 16 13 C 0.05 -0.26 5.12 71.98 0.37 0.11 16 14 O -0.31 -0.12 9.01 -87.99 -0.79 -0.92 16 15 C 0.15 0.27 6.62 22.50 0.15 0.42 16 16 C -0.19 0.21 9.04 22.36 0.20 0.41 16 17 C -0.06 -0.02 9.82 22.28 0.22 0.19 16 18 C -0.08 -0.32 6.32 22.33 0.14 -0.18 16 19 Cl -0.07 -0.33 28.95 -2.72 -0.08 -0.41 16 20 C -0.09 -0.44 8.44 22.28 0.19 -0.25 16 21 C -0.15 -0.61 5.28 -19.77 -0.10 -0.71 16 22 C -0.08 -0.28 2.33 71.24 0.17 -0.11 16 23 O -0.55 -2.44 12.65 -148.98 -1.89 -4.32 16 24 Si 1.02 3.76 25.74 68.60 1.77 5.53 16 25 H -0.24 -0.68 7.11 99.48 0.71 0.02 16 26 H -0.26 -1.33 6.74 99.48 0.67 -0.66 16 27 H -0.26 -1.43 7.11 99.48 0.71 -0.72 16 28 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 29 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 32 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 34 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 35 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.06 0.07 7.79 -2.39 -0.02 0.05 16 37 H 0.07 -0.30 7.48 -2.39 -0.02 -0.32 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 40 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 41 H 0.08 -0.08 7.79 -2.38 -0.02 -0.10 16 42 H 0.07 -0.07 7.48 -2.39 -0.02 -0.09 16 43 H 0.09 -0.68 7.21 -2.39 -0.02 -0.70 16 44 H 0.06 -0.17 7.21 -2.39 -0.02 -0.19 16 45 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 49 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 50 H 0.10 -1.04 7.66 -2.39 -0.02 -1.06 16 51 H 0.17 -1.12 6.30 -2.91 -0.02 -1.14 16 52 H 0.16 -0.57 8.06 -2.91 -0.02 -0.60 16 53 H 0.14 0.57 4.89 -2.91 -0.01 0.56 16 54 H 0.09 0.19 7.83 -2.39 -0.02 0.18 16 55 H 0.38 -0.15 8.61 -74.05 -0.64 -0.79 16 Total: 0.00 -12.94 452.37 4.16 -8.77 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: 0.94 Total: -8.64 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.25 Total: 5.48 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -5.30 Total: -8.79 kcal Atomic # 14 Polarization: 1.24 SS G_CDS: 2.35 Total: 3.58 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -12.94 4.16 -8.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508404_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.774 kcal (2) G-P(sol) polarization free energy of solvation -12.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds