Wall clock time and date at job start Tue Mar 9 2021 18:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47115 * 239.99937 * 2 1 3 5 5 Si 1.86301 * 109.47005 * 119.99971 * 2 1 3 6 6 C 1.86297 * 109.47443 * 299.99935 * 5 2 1 7 7 C 1.86304 * 109.47073 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47326 * 60.00400 * 5 2 1 9 9 C 1.42900 * 114.00329 * 179.97438 * 8 5 2 10 10 C 1.52994 * 109.47261 * 179.97438 * 9 8 5 11 11 C 1.52996 * 109.47079 * 180.02562 * 10 9 8 12 12 O 1.42907 * 109.47407 * 180.02562 * 11 10 9 13 13 C 1.35917 * 116.99980 * 180.02562 * 12 11 10 14 14 C 1.38698 * 120.04650 * 0.02562 * 13 12 11 15 15 C 1.38162 * 119.95830 * 179.97438 * 14 13 12 16 16 C 1.38347 * 120.04376 * 0.02562 * 15 14 13 17 17 Cl 1.73592 * 119.95958 * 180.02562 * 16 15 14 18 18 C 1.38385 * 120.08324 * 359.72200 * 16 15 14 19 19 C 1.38128 * 120.04137 * 0.55707 * 18 16 15 20 20 C 1.50701 * 120.02180 * 179.72204 * 19 18 16 21 21 O 1.42895 * 109.47079 * 254.72821 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.72316 * 20 19 18 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 H 1.09002 * 109.47015 * 299.99488 * 1 2 3 27 27 H 1.08991 * 109.47487 * 60.00168 * 1 2 3 28 28 H 1.09010 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46866 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.46878 * 300.00205 * 3 2 1 31 31 H 1.09002 * 109.46834 * 60.00401 * 3 2 1 32 32 H 1.09001 * 109.46951 * 299.99791 * 4 2 1 33 33 H 1.08999 * 109.46624 * 60.00108 * 4 2 1 34 34 H 1.09000 * 109.46724 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47567 * 179.97438 * 6 5 2 36 36 H 1.09000 * 109.47334 * 300.00489 * 6 5 2 37 37 H 1.09006 * 109.46983 * 60.00286 * 6 5 2 38 38 H 1.09003 * 109.47014 * 299.99941 * 7 5 2 39 39 H 1.09001 * 109.47252 * 59.99530 * 7 5 2 40 40 H 1.08999 * 109.47355 * 180.02562 * 7 5 2 41 41 H 1.09006 * 109.46802 * 59.99659 * 9 8 5 42 42 H 1.08996 * 109.47355 * 300.00040 * 9 8 5 43 43 H 1.08997 * 109.47437 * 60.00164 * 10 9 8 44 44 H 1.09001 * 109.47105 * 299.99971 * 10 9 8 45 45 H 1.09002 * 109.47610 * 60.00370 * 11 10 9 46 46 H 1.08996 * 109.47294 * 300.00178 * 11 10 9 47 47 H 1.08003 * 120.01766 * 359.97438 * 14 13 12 48 48 H 1.07999 * 119.98283 * 180.02562 * 15 14 13 49 49 H 1.07999 * 119.97984 * 180.27588 * 18 16 15 50 50 H 1.09001 * 109.47380 * 134.72218 * 20 19 18 51 51 H 0.96708 * 113.99763 * 299.99687 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6074 -2.4160 1.5211 9 6 2.0295 -3.1817 2.6514 10 6 1.4637 -4.5994 2.5471 11 6 1.9151 -5.4190 3.7575 12 8 1.3871 -6.7434 3.6599 13 6 1.6959 -7.6063 4.6635 14 6 2.4900 -7.1868 5.7204 15 6 2.8024 -8.0654 6.7399 16 6 2.3239 -9.3631 6.7068 17 17 2.7172 -10.4649 7.9893 18 6 1.5271 -9.7820 5.6558 19 6 1.2175 -8.9083 4.6318 20 6 0.3548 -9.3668 3.4843 21 8 1.1693 -9.5709 2.3280 22 14 -0.4873 -10.9649 3.9404 23 1 -1.3337 -10.7530 5.1421 24 1 0.5378 -11.9987 4.2331 25 1 -1.3368 -11.4171 2.8095 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.8929 -0.5141 3.9323 36 1 1.8933 1.0276 3.0423 37 1 0.4400 -0.0001 3.0423 38 1 4.3777 -1.3912 0.6316 39 1 4.3770 0.1502 1.5217 40 1 4.3774 -1.3918 2.4113 41 1 1.6653 -2.7118 3.5651 42 1 3.1183 -3.2256 2.6745 43 1 1.8274 -5.0695 1.6335 44 1 0.3748 -4.5552 2.5243 45 1 1.5509 -4.9488 4.6711 46 1 3.0039 -5.4632 3.7808 47 1 2.8640 -6.1739 5.7463 48 1 3.4204 -7.7390 7.5633 49 1 1.1509 -10.7941 5.6339 50 1 -0.3976 -8.6081 3.2695 51 1 1.6390 -8.7787 2.0331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_508404_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:21:14 Heat of formation + Delta-G solvation = -157.070197 kcal Electronic energy + Delta-G solvation = -27879.600017 eV Core-core repulsion = 23928.248378 eV Total energy + Delta-G solvation = -3951.351639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56426 -39.12181 -38.10676 -37.79708 -37.04353 -36.81539 -33.58443 -32.81068 -30.73814 -29.35857 -29.04379 -27.83338 -27.36499 -26.92560 -26.71592 -23.79077 -22.86551 -22.11300 -20.40661 -19.43235 -18.40250 -17.96297 -17.49642 -17.27804 -17.08759 -16.26233 -16.11960 -15.90696 -15.68516 -15.39219 -15.16792 -14.85470 -14.77429 -14.66531 -14.52169 -14.22128 -13.93017 -13.78400 -13.45102 -13.37777 -13.34934 -13.17598 -13.14547 -12.94510 -12.92944 -12.79703 -12.43158 -12.35565 -12.25101 -12.23687 -12.12810 -11.87962 -11.75278 -11.68736 -11.57307 -11.31004 -11.28476 -11.21020 -11.06899 -10.28640 -10.17736 -10.04261 -9.22161 0.00696 0.06276 1.09944 1.16317 1.44240 1.46565 1.48628 1.80299 1.91978 2.08637 2.15117 2.40360 2.54087 3.44701 3.60875 3.87548 3.90129 3.94528 4.02597 4.10031 4.12737 4.13646 4.14363 4.25039 4.40068 4.42193 4.46772 4.47564 4.50701 4.63840 4.76450 4.77004 4.80057 4.81488 4.83574 4.83740 4.92114 5.01049 5.03261 5.09320 5.10123 5.10526 5.10693 5.13447 5.23438 5.36262 5.42048 5.42077 5.45936 5.57981 5.63426 5.66688 6.24069 6.63996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.322 2.678 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.078 3.922 10 C -0.121 4.121 11 C 0.051 3.949 12 O -0.317 6.317 13 C 0.147 3.853 14 C -0.189 4.189 15 C -0.065 4.065 16 C -0.080 4.080 17 Cl -0.073 7.073 18 C -0.089 4.089 19 C -0.146 4.146 20 C -0.080 4.080 21 O -0.550 6.550 22 Si 1.021 2.979 23 H -0.240 1.240 24 H -0.263 1.263 25 H -0.268 1.268 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.169 0.831 48 H 0.157 0.843 49 H 0.139 0.861 50 H 0.090 0.910 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 4.996 1.755 5.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.451 2.549 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.003 3.997 10 C -0.158 4.158 11 C -0.024 4.024 12 O -0.230 6.230 13 C 0.101 3.899 14 C -0.208 4.208 15 C -0.083 4.083 16 C -0.107 4.107 17 Cl -0.044 7.044 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.189 4.189 21 O -0.357 6.357 22 Si 0.843 3.157 23 H -0.163 1.163 24 H -0.188 1.188 25 H -0.192 1.192 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.186 0.814 48 H 0.175 0.825 49 H 0.156 0.844 50 H 0.108 0.892 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.673 3.344 1.806 3.859 hybrid contribution 0.781 1.451 -0.019 1.648 sum 1.454 4.794 1.787 5.319 Atomic orbital electron populations 1.21542 0.94377 1.01738 1.01767 1.25995 1.00337 1.03066 1.13480 1.21601 1.01288 0.94765 1.02142 1.21542 1.01021 1.00012 0.96849 0.76082 0.62448 0.52583 0.63775 1.27106 1.06833 1.09850 1.18234 1.27105 1.25219 1.05003 1.04682 1.85326 1.79696 1.46642 1.48335 1.22026 0.99251 0.91103 0.87345 1.21476 1.02811 0.93652 0.97879 1.22985 0.99837 0.79368 1.00164 1.86023 1.71052 1.22963 1.42981 1.18859 0.93804 0.89068 0.88205 1.21545 1.02285 1.02477 0.94486 1.21171 0.97648 0.90416 0.99084 1.20867 1.04117 0.92871 0.92802 1.98383 1.93133 1.63197 1.49724 1.20942 0.97273 0.99982 0.92579 1.19618 1.04312 0.92127 0.98702 1.25152 0.95850 1.12950 0.84906 1.86669 1.64614 1.40035 1.44343 0.84372 0.77879 0.73942 0.79528 1.16292 1.18777 1.19245 0.92077 0.93540 0.92527 0.91780 0.93333 0.91789 0.92512 0.93551 0.92063 0.90672 0.90509 0.91268 0.91247 0.90515 0.90664 0.90780 0.90692 0.90271 0.90555 0.89765 0.89610 0.81356 0.82491 0.84393 0.89202 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.05 7.85 71.98 0.56 0.62 16 2 C -0.39 0.65 0.53 -10.79 -0.01 0.64 16 3 C -0.14 0.32 7.85 71.98 0.56 0.89 16 4 C -0.14 0.06 7.85 71.98 0.56 0.62 16 5 Si 1.32 -6.29 8.45 68.60 0.58 -5.71 16 6 C -0.52 2.33 8.50 113.37 0.96 3.29 16 7 C -0.52 2.34 8.50 113.37 0.96 3.30 16 8 O -0.64 1.67 8.56 -148.98 -1.28 0.40 16 9 C 0.08 -0.54 5.12 71.98 0.37 -0.17 16 10 C -0.12 0.71 5.95 30.59 0.18 0.89 16 11 C 0.05 -0.39 4.74 71.98 0.34 -0.05 16 12 O -0.32 0.68 9.04 -92.62 -0.84 -0.16 16 13 C 0.15 -0.05 6.62 22.50 0.15 0.10 16 14 C -0.19 0.64 9.04 22.36 0.20 0.85 16 15 C -0.06 0.09 9.82 22.28 0.22 0.31 16 16 C -0.08 -0.21 6.32 22.33 0.14 -0.06 16 17 Cl -0.07 -0.25 28.95 -2.72 -0.08 -0.33 16 18 C -0.09 -0.31 8.44 22.28 0.19 -0.13 16 19 C -0.15 -0.36 5.28 -19.77 -0.10 -0.46 16 20 C -0.08 -0.17 2.33 71.24 0.17 -0.01 16 21 O -0.55 -2.16 12.65 -148.98 -1.89 -4.04 16 22 Si 1.02 2.72 25.74 68.60 1.77 4.49 16 23 H -0.24 -0.33 7.11 99.48 0.71 0.38 16 24 H -0.26 -1.20 6.74 99.48 0.67 -0.53 16 25 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 26 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 27 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.06 0.01 7.97 -2.38 -0.02 -0.01 16 29 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 32 H 0.06 0.01 7.97 -2.39 -0.02 -0.01 16 33 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 35 H 0.07 -0.46 7.48 -2.39 -0.02 -0.48 16 36 H 0.08 -0.36 7.79 -2.39 -0.02 -0.37 16 37 H 0.07 -0.23 7.79 -2.38 -0.02 -0.25 16 38 H 0.07 -0.24 7.79 -2.39 -0.02 -0.25 16 39 H 0.08 -0.36 7.79 -2.39 -0.02 -0.37 16 40 H 0.07 -0.47 7.48 -2.39 -0.02 -0.48 16 41 H 0.07 -0.76 7.21 -2.38 -0.02 -0.77 16 42 H 0.08 -0.77 7.21 -2.39 -0.02 -0.79 16 43 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.08 -0.89 7.66 -2.39 -0.02 -0.91 16 46 H 0.09 -0.93 7.66 -2.39 -0.02 -0.95 16 47 H 0.17 -1.63 6.30 -2.91 -0.02 -1.64 16 48 H 0.16 -0.86 8.06 -2.91 -0.02 -0.88 16 49 H 0.14 0.42 4.89 -2.91 -0.01 0.40 16 50 H 0.09 -0.01 7.83 -2.39 -0.02 -0.03 16 51 H 0.38 -0.32 8.61 -74.05 -0.64 -0.95 16 Total: 0.00 -10.45 418.44 4.72 -5.73 By element: Atomic # 1 Polarization: -11.99 SS G_CDS: 0.98 Total: -11.01 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.47 Total: 10.64 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: -4.00 Total: -3.80 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.35 Total: -1.23 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -10.45 4.72 -5.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_508404_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.338 kcal (2) G-P(sol) polarization free energy of solvation -10.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds