Wall clock time and date at job start Tue Mar 9 2021 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00042 * 2 1 4 4 C 1.38615 * 120.02745 * 180.02562 * 3 2 1 5 5 C 1.38652 * 119.88942 * 179.72737 * 4 3 2 6 6 O 1.35899 * 120.02319 * 180.02562 * 5 4 3 7 7 C 1.42891 * 117.00352 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47255 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46975 * 180.02562 * 8 7 6 10 10 O 1.42960 * 109.47602 * 300.00046 * 8 7 6 11 11 C 1.43084 * 113.77529 * 178.79257 * 10 8 7 12 12 C 1.53263 * 108.94201 * 302.03225 * 11 10 8 13 13 H 1.08997 * 109.68175 * 294.65187 * 12 11 10 14 14 N 1.46497 * 109.57556 * 174.32924 * 12 11 10 15 15 C 1.34523 * 124.46283 * 300.34087 * 14 12 11 16 16 O 1.21443 * 125.71017 * 0.03377 * 15 14 12 17 17 C 1.47813 * 108.58330 * 179.90682 * 15 14 12 18 18 C 1.40952 * 105.87837 * 0.34473 * 17 15 14 19 19 C 1.38568 * 119.81838 * 179.80007 * 18 17 15 20 20 C 1.38608 * 119.72357 * 359.97438 * 19 18 17 21 21 C 1.38230 * 120.45854 * 0.04424 * 20 19 18 22 22 C 1.38563 * 134.30177 * 180.09631 * 17 15 14 23 23 C 1.34526 * 124.45935 * 120.64010 * 14 12 11 24 24 O 1.21454 * 125.71043 * 359.94138 * 23 14 12 25 25 C 1.53261 * 108.84515 * 54.52397 * 12 11 10 26 26 O 1.42973 * 109.46953 * 60.00301 * 8 7 6 27 27 C 1.38748 * 119.94814 * 0.02562 * 5 4 3 28 28 C 1.50700 * 119.97479 * 179.97438 * 27 5 4 29 29 O 1.42894 * 109.47252 * 284.99695 * 28 27 5 30 30 Si 1.86300 * 109.46973 * 164.99838 * 28 27 5 31 31 C 1.38198 * 120.05244 * 359.97438 * 27 5 4 32 32 C 1.38150 * 120.11079 * 0.04429 * 31 27 5 33 33 H 1.08998 * 109.46791 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46420 * 299.99136 * 1 2 3 35 35 H 1.08993 * 109.47450 * 59.99009 * 1 2 3 36 36 H 1.08003 * 120.04971 * 359.70344 * 4 3 2 37 37 H 1.09001 * 109.47429 * 299.99682 * 7 6 5 38 38 H 1.09009 * 109.47375 * 59.99662 * 7 6 5 39 39 H 1.08999 * 109.56530 * 182.19299 * 11 10 8 40 40 H 1.09001 * 109.64714 * 61.92041 * 11 10 8 41 41 H 1.07999 * 120.13458 * 179.97438 * 19 18 17 42 42 H 1.07999 * 119.77469 * 180.02562 * 20 19 18 43 43 H 1.07996 * 119.77266 * 179.97438 * 21 20 19 44 44 H 1.07999 * 120.13956 * 0.25476 * 22 17 15 45 45 H 1.09000 * 109.55789 * 185.63886 * 25 12 11 46 46 H 1.08998 * 109.56007 * 65.31053 * 25 12 11 47 47 H 1.09001 * 109.46809 * 45.00184 * 28 27 5 48 48 H 0.96701 * 114.00589 * 300.00651 * 29 28 27 49 49 H 1.48494 * 109.99960 * 58.68358 * 30 28 27 50 50 H 1.48499 * 109.99771 * 180.02562 * 30 28 27 51 51 H 1.08000 * 119.94685 * 180.02562 * 31 27 5 52 52 H 1.08001 * 119.97703 * 179.97438 * 32 31 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4302 1.2841 -0.0005 5 6 4.0567 2.5210 -0.0063 6 8 5.4136 2.5959 -0.0073 7 6 6.1316 1.3605 -0.0029 8 6 7.6351 1.6443 -0.0055 9 1 8.1828 0.7019 -0.0026 10 8 7.9773 2.3901 -1.1762 11 6 9.3646 2.7307 -1.2581 12 6 9.7527 3.5392 -0.0152 13 1 9.2239 4.4923 -0.0174 14 7 11.1978 3.7796 -0.0175 15 6 12.1307 2.8105 -0.0148 16 8 11.9119 1.6159 -0.0107 17 6 13.4668 3.4427 -0.0207 18 6 13.2354 4.8331 -0.0189 19 6 14.3083 5.7101 -0.0192 20 6 15.6022 5.2131 -0.0209 21 6 15.8291 3.8496 -0.0231 22 6 14.7657 2.9603 -0.0228 23 6 11.7666 4.9987 -0.0168 24 8 11.1727 6.0581 -0.0153 25 6 9.3670 2.7409 1.2350 26 8 7.9794 2.3998 1.1585 27 6 3.2972 3.6821 -0.0109 28 6 3.9775 5.0268 -0.0165 29 8 4.5038 5.2998 1.2836 30 14 2.7439 6.3449 -0.4764 31 6 1.9173 3.6065 -0.0103 32 6 1.2907 2.3753 -0.0043 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3632 0.5137 0.8901 35 1 -0.3634 0.5139 -0.8898 36 1 4.0197 0.3791 0.0039 37 1 5.8705 0.7916 0.8895 38 1 5.8694 0.7846 -0.8905 39 1 9.5415 3.3285 -2.1521 40 1 9.9633 1.8209 -1.3031 41 1 14.1369 6.7764 -0.0182 42 1 16.4390 5.8959 -0.0208 43 1 16.8418 3.4744 -0.0249 44 1 14.9489 1.8960 -0.0240 45 1 9.5455 3.3461 2.1238 46 1 9.9643 1.8306 1.2853 47 1 4.7898 5.0199 -0.7433 48 1 3.8354 5.3211 1.9821 49 1 1.6154 6.3432 0.4888 50 1 3.4025 7.6758 -0.4861 51 1 1.3277 4.5113 -0.0144 52 1 0.2121 2.3187 -0.0034 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_575374_13594088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:27:44 Heat of formation + Delta-G solvation = -150.243990 kcal Electronic energy + Delta-G solvation = -42100.209625 eV Core-core repulsion = 36578.734323 eV Total energy + Delta-G solvation = -5521.475302 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.149 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.74399 -41.80016 -41.22225 -40.04023 -39.95575 -39.48060 -38.44211 -37.26738 -37.11650 -37.00862 -34.58084 -32.33156 -32.18831 -31.98394 -30.92097 -29.67210 -28.37601 -27.53747 -26.38482 -26.13256 -25.57692 -24.62195 -23.51908 -23.04573 -22.40549 -22.27833 -21.04512 -19.95935 -19.17429 -19.01348 -18.86581 -18.44414 -18.01526 -17.69524 -17.63374 -17.52013 -17.07332 -16.95255 -16.69585 -16.51803 -16.43886 -16.38423 -16.18823 -15.94645 -15.84983 -15.51752 -15.43032 -15.36574 -15.17312 -15.09287 -14.81431 -14.71579 -14.52748 -14.27896 -13.83567 -13.69117 -13.53905 -13.33132 -13.29848 -13.07078 -12.72310 -12.66732 -12.63359 -12.35966 -12.30491 -12.24943 -11.99885 -11.73368 -11.67448 -11.63885 -11.61882 -10.99608 -10.89543 -10.50958 -10.28361 -10.27096 -9.69673 -9.09034 -4.93498 -1.14498 -0.08503 0.19663 0.32356 0.83899 0.85700 1.31406 1.55057 1.58184 1.93429 1.96346 2.16423 2.24747 2.30873 2.41574 2.54801 2.56984 3.03616 3.11909 3.18482 3.43080 3.49382 3.51155 3.63339 3.67227 3.79108 3.81387 3.87634 3.99933 4.01546 4.03715 4.06603 4.09408 4.12518 4.15216 4.19294 4.24797 4.35300 4.37280 4.40096 4.40541 4.42642 4.45355 4.51896 4.66866 4.76539 4.78266 4.85411 5.02610 5.16121 5.22765 5.23671 5.26991 5.31451 5.38709 5.51137 5.63276 5.70732 5.88789 6.20428 6.30725 6.38147 6.56590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.164 3.836 4 C -0.258 4.258 5 C 0.179 3.821 6 O -0.300 6.300 7 C 0.069 3.931 8 C 0.239 3.761 9 H 0.107 0.893 10 O -0.384 6.384 11 C 0.053 3.947 12 C 0.077 3.923 13 H 0.111 0.889 14 N -0.570 5.570 15 C 0.576 3.424 16 O -0.480 6.480 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.041 4.041 23 C 0.574 3.426 24 O -0.491 6.491 25 C 0.052 3.948 26 O -0.385 6.385 27 C -0.196 4.196 28 C -0.074 4.074 29 O -0.548 6.548 30 Si 0.778 3.222 31 C -0.041 4.041 32 C -0.240 4.240 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.381 0.619 49 H -0.263 1.263 50 H -0.307 1.307 51 H 0.156 0.844 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -2.736 -1.888 4.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.118 3.882 4 C -0.277 4.277 5 C 0.132 3.868 6 O -0.213 6.213 7 C -0.006 4.006 8 C 0.145 3.855 9 H 0.124 0.876 10 O -0.303 6.303 11 C -0.024 4.024 12 C -0.025 4.025 13 H 0.129 0.871 14 N -0.314 5.314 15 C 0.368 3.632 16 O -0.353 6.353 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.060 4.060 23 C 0.365 3.635 24 O -0.364 6.364 25 C -0.025 4.025 26 O -0.305 6.305 27 C -0.197 4.197 28 C -0.182 4.182 29 O -0.355 6.355 30 Si 0.682 3.318 31 C -0.059 4.059 32 C -0.258 4.258 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.194 0.806 43 H 0.195 0.805 44 H 0.175 0.825 45 H 0.126 0.874 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.229 0.771 49 H -0.189 1.189 50 H -0.235 1.235 51 H 0.173 0.827 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.026 -2.054 -1.973 4.156 hybrid contribution 0.062 -0.383 1.293 1.350 sum 3.088 -2.437 -0.680 3.992 Atomic orbital electron populations 1.23405 0.75962 1.05702 1.02712 1.86056 1.23836 1.26719 1.87983 1.18870 0.91580 0.85005 0.92743 1.20543 0.93466 0.97467 1.16206 1.18629 0.82419 0.92945 0.92771 1.86280 1.15073 1.32235 1.87676 1.23118 0.86777 0.85984 1.04751 1.23922 0.94596 0.91388 0.75614 0.87579 1.88226 1.24963 1.74910 1.42196 1.22997 0.82502 0.99690 0.97229 1.22544 0.78065 1.02892 0.99031 0.87116 1.46482 1.07689 1.09029 1.68210 1.18740 0.85935 0.84965 0.73582 1.90786 1.85323 1.14217 1.44925 1.20444 0.94034 0.93646 1.08089 1.20419 0.92184 0.95487 1.08213 1.21163 0.90747 1.00638 0.93803 1.21961 0.96556 0.96771 0.94783 1.21982 1.00576 0.92795 0.94696 1.21176 0.88733 1.02523 0.93547 1.18856 0.88834 0.82296 0.73494 1.90831 1.71310 1.29095 1.45147 1.22989 0.82547 0.99730 0.97215 1.88262 1.24920 1.74469 1.42817 1.19607 0.93467 0.93989 1.12679 1.25120 1.06238 0.99441 0.87409 1.86636 1.38498 1.92923 1.17470 0.94118 0.75580 0.73460 0.88665 1.20952 0.92129 0.98713 0.94088 1.21370 1.01533 0.91201 1.11735 0.86550 0.91454 0.91055 0.83755 0.88048 0.87481 0.86861 0.90391 0.83001 0.80581 0.80451 0.82486 0.87366 0.90414 0.88343 0.77096 1.18906 1.23519 0.82678 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -1.27 10.49 -92.42 -0.97 -2.24 16 3 C 0.16 0.79 6.68 22.49 0.15 0.94 16 4 C -0.26 -1.57 8.97 22.46 0.20 -1.37 16 5 C 0.18 1.51 6.66 22.49 0.15 1.66 16 6 O -0.30 -3.18 9.25 -72.84 -0.67 -3.85 16 7 C 0.07 0.29 4.83 71.98 0.35 0.63 16 8 C 0.24 1.37 3.59 71.98 0.26 1.63 16 9 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 10 O -0.38 -3.24 10.43 -121.89 -1.27 -4.51 16 11 C 0.05 0.30 6.32 72.07 0.46 0.76 16 12 C 0.08 0.55 3.08 45.17 0.14 0.69 16 13 H 0.11 1.20 7.59 -2.39 -0.02 1.19 16 14 N -0.57 -3.51 2.53 -739.56 -1.87 -5.38 16 15 C 0.58 2.91 7.35 86.82 0.64 3.55 16 16 O -0.48 -3.79 15.16 -3.54 -0.05 -3.84 16 17 C -0.16 -0.15 6.41 -20.00 -0.13 -0.28 16 18 C -0.16 -0.32 6.41 -20.00 -0.13 -0.44 16 19 C -0.04 0.16 10.09 22.44 0.23 0.39 16 20 C -0.08 0.77 10.04 22.36 0.22 1.00 16 21 C -0.08 0.81 10.04 22.36 0.22 1.03 16 22 C -0.04 0.21 10.09 22.44 0.23 0.43 16 23 C 0.57 4.37 8.02 86.82 0.70 5.07 16 24 O -0.49 -6.74 17.44 -3.57 -0.06 -6.81 16 25 C 0.05 0.35 6.32 72.07 0.46 0.80 16 26 O -0.39 -3.72 10.43 -121.89 -1.27 -4.99 16 27 C -0.20 -1.25 5.27 -19.75 -0.10 -1.36 16 28 C -0.07 -0.54 2.37 71.24 0.17 -0.37 16 29 O -0.55 -5.97 12.88 -148.98 -1.92 -7.89 16 30 Si 0.78 1.51 30.24 68.60 2.07 3.59 16 31 C -0.04 -0.08 8.65 22.24 0.19 0.11 16 32 C -0.24 -0.35 9.04 22.38 0.20 -0.15 16 33 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.07 -0.40 7.67 -2.38 -0.02 -0.42 16 35 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 36 H 0.14 0.47 6.30 -2.91 -0.02 0.45 16 37 H 0.10 0.12 7.66 -2.39 -0.02 0.10 16 38 H 0.11 0.02 7.66 -2.38 -0.02 0.00 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.38 6.67 -2.39 -0.02 0.36 16 41 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 42 H 0.18 -2.72 8.06 -2.91 -0.02 -2.74 16 43 H 0.18 -2.86 8.06 -2.91 -0.02 -2.88 16 44 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 45 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.43 6.67 -2.39 -0.02 0.42 16 47 H 0.10 0.98 7.82 -2.39 -0.02 0.96 16 48 H 0.38 1.48 8.70 -74.06 -0.64 0.83 16 49 H -0.26 -0.60 6.68 99.48 0.66 0.06 16 50 H -0.31 -3.09 7.11 99.48 0.71 -2.39 16 51 H 0.16 -0.39 4.85 -2.91 -0.01 -0.41 16 52 H 0.16 -0.63 6.29 -2.91 -0.02 -0.64 16 Total: 0.00 -27.70 433.03 0.05 -27.64 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: 0.36 Total: -7.52 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.71 Total: 15.78 kcal Atomic # 7 Polarization: -3.51 SS G_CDS: -1.87 Total: -5.38 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -6.22 Total: -34.12 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 2.07 Total: 3.59 kcal Total: -27.70 0.05 -27.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_13594088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.600 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds