Wall clock time and date at job start Tue Mar 9 2021 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00469 * 2 1 4 4 C 1.38610 * 120.02787 * 180.02562 * 3 2 1 5 5 C 1.38658 * 119.88723 * 179.70507 * 4 3 2 6 6 O 1.35897 * 120.02821 * 180.27224 * 5 4 3 7 7 C 1.42898 * 117.00082 * 0.25054 * 6 5 4 8 8 C 1.52992 * 109.47420 * 180.02562 * 7 6 5 9 9 H 1.09005 * 112.84949 * 314.66440 * 8 7 6 10 10 C 1.53784 * 113.61534 * 85.86181 * 8 7 6 11 11 C 1.53957 * 87.01677 * 139.95572 * 10 8 7 12 12 H 1.09004 * 113.66103 * 220.07100 * 11 10 8 13 13 N 1.46491 * 113.54129 * 89.19145 * 11 10 8 14 14 C 1.34776 * 120.00372 * 107.49804 * 13 11 10 15 15 O 1.21512 * 119.99766 * 0.02562 * 14 13 11 16 16 O 1.34633 * 120.00411 * 179.97438 * 14 13 11 17 17 C 1.45200 * 117.00484 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46935 * 59.99990 * 17 16 14 19 19 C 1.52994 * 109.47658 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.46688 * 300.00398 * 17 16 14 21 21 C 1.53777 * 113.61592 * 183.47106 * 8 7 6 22 22 C 1.38751 * 119.94488 * 0.52070 * 5 4 3 23 23 C 1.50706 * 119.97440 * 179.75175 * 22 5 4 24 24 O 1.42895 * 109.46938 * 74.72532 * 23 22 5 25 25 Si 1.86301 * 109.47233 * 194.72877 * 23 22 5 26 26 C 1.38200 * 120.05563 * 359.47721 * 22 5 4 27 27 C 1.38151 * 120.11019 * 0.27354 * 26 22 5 28 28 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47182 * 300.00576 * 1 2 3 30 30 H 1.09005 * 109.46748 * 60.00203 * 1 2 3 31 31 H 1.07994 * 120.05721 * 359.95673 * 4 3 2 32 32 H 1.08999 * 109.46883 * 300.00317 * 7 6 5 33 33 H 1.09007 * 109.46947 * 59.99902 * 7 6 5 34 34 H 1.08997 * 113.61079 * 254.52966 * 10 8 7 35 35 H 1.08994 * 113.61321 * 25.43345 * 10 8 7 36 36 H 0.97006 * 120.00111 * 287.50349 * 13 11 10 37 37 H 1.08996 * 109.47077 * 60.00627 * 18 17 16 38 38 H 1.09001 * 109.46902 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47477 * 300.00015 * 18 17 16 40 40 H 1.09000 * 109.47358 * 59.99750 * 19 17 16 41 41 H 1.08994 * 109.47888 * 180.02562 * 19 17 16 42 42 H 1.09011 * 109.46816 * 300.00157 * 19 17 16 43 43 H 1.09001 * 109.47483 * 60.00133 * 20 17 16 44 44 H 1.09002 * 109.46525 * 179.97438 * 20 17 16 45 45 H 1.09000 * 109.46947 * 299.99404 * 20 17 16 46 46 H 1.09000 * 113.61622 * 334.56366 * 21 8 7 47 47 H 1.09004 * 113.61734 * 105.46764 * 21 8 7 48 48 H 1.09001 * 109.46953 * 314.72569 * 23 22 5 49 49 H 0.96696 * 114.00485 * 60.00759 * 24 23 22 50 50 H 1.48498 * 109.99815 * 179.97438 * 25 23 22 51 51 H 1.48492 * 109.99988 * 301.31687 * 25 23 22 52 52 H 1.08005 * 119.94404 * 180.29156 * 26 22 5 53 53 H 1.07998 * 119.97921 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4302 1.2839 -0.0005 5 6 4.0568 2.5209 -0.0067 6 8 5.4137 2.5958 -0.0129 7 6 6.1317 1.3604 -0.0181 8 6 7.6351 1.6442 -0.0239 9 1 7.9170 2.4178 -0.7382 10 6 8.2275 1.8558 1.3793 11 6 9.4440 1.0426 0.9006 12 1 9.8332 0.3547 1.6513 13 7 10.4887 1.8621 0.2818 14 6 11.6449 2.0874 0.9368 15 8 11.8209 1.6103 2.0404 16 8 12.6053 2.8401 0.3679 17 6 13.8245 3.0403 1.1306 18 6 14.4773 1.6857 1.4134 19 6 14.7902 3.9149 0.3286 20 6 13.4903 3.7315 2.4541 21 6 8.5009 0.3766 -0.1152 22 6 3.2973 3.6820 -0.0014 23 6 3.9776 5.0268 -0.0025 24 8 4.5033 5.2935 -1.3042 25 14 2.7443 6.3471 0.4518 26 6 1.9173 3.6065 -0.0009 27 6 1.2906 2.3753 0.0000 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0197 0.3790 -0.0002 32 1 5.8740 0.7867 0.8721 33 1 5.8659 0.7894 -0.9078 34 1 8.4581 2.8973 1.6033 35 1 7.6598 1.3672 2.1711 36 1 10.3484 2.2427 -0.5993 37 1 14.7154 1.1933 0.4706 38 1 15.3923 1.8360 1.9864 39 1 13.7892 1.0630 1.9851 40 1 14.3249 4.8798 0.1275 41 1 15.7056 4.0648 0.9010 42 1 15.0283 3.4227 -0.6145 43 1 12.8022 3.1087 3.0257 44 1 14.4055 3.8814 3.0269 45 1 13.0252 4.6965 2.2526 46 1 8.0082 -0.5173 0.2674 47 1 8.9520 0.2255 -1.0959 48 1 4.7903 5.0233 0.7239 49 1 3.8346 5.3117 -2.0024 50 1 3.4030 7.6780 0.4549 51 1 1.6153 6.3409 -0.5127 52 1 1.3279 4.5115 -0.0016 53 1 0.2122 2.3187 0.0008 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_575374_15734082.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:31:13 Heat of formation + Delta-G solvation = -128.621859 kcal Electronic energy + Delta-G solvation = -33486.775203 eV Core-core repulsion = 28906.345877 eV Total energy + Delta-G solvation = -4580.429326 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01248 -41.67750 -40.59919 -39.79866 -38.43285 -37.83062 -36.97910 -35.39013 -34.12507 -32.28223 -31.28707 -29.31523 -28.39481 -28.35396 -28.32929 -26.75872 -26.12000 -25.01426 -23.66245 -22.76585 -22.34839 -21.19500 -20.35561 -19.75819 -19.35542 -18.39665 -17.80227 -17.61774 -17.29978 -17.25265 -17.11333 -16.67102 -16.51827 -16.45664 -16.09370 -15.93208 -15.59953 -15.43190 -15.21915 -14.98940 -14.79586 -14.51035 -14.41868 -14.08967 -13.67520 -13.49793 -13.39853 -13.34836 -13.29454 -13.16064 -13.00916 -12.94769 -12.89893 -12.57712 -12.38125 -12.34629 -12.28937 -12.11332 -11.84892 -11.69688 -11.67692 -11.58350 -11.42806 -11.20773 -11.15117 -10.50758 -10.22270 -9.67386 -9.07186 -4.91311 0.21015 0.34234 1.09765 1.33272 1.57212 1.68430 1.95586 2.05818 2.33271 2.58385 3.07434 3.37566 3.49323 3.50304 3.67956 3.71215 3.73757 3.78026 3.81620 3.82698 3.91475 4.07101 4.13342 4.21187 4.27859 4.38772 4.39612 4.40294 4.44345 4.45938 4.55251 4.58532 4.58874 4.68649 4.71172 4.73118 4.73643 4.76340 4.80031 4.84760 4.86294 4.97197 5.01174 5.03890 5.05077 5.14204 5.24426 5.25977 5.28647 5.29706 5.44438 5.52756 5.58279 6.25731 6.33226 6.41896 6.56238 7.28751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.162 3.838 4 C -0.257 4.257 5 C 0.183 3.817 6 O -0.312 6.312 7 C 0.063 3.937 8 C -0.104 4.104 9 H 0.097 0.903 10 C -0.144 4.144 11 C 0.131 3.869 12 H 0.099 0.901 13 N -0.685 5.685 14 C 0.646 3.354 15 O -0.591 6.591 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.179 4.179 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.118 4.118 22 C -0.198 4.198 23 C -0.069 4.069 24 O -0.547 6.547 25 Si 0.771 3.229 26 C -0.043 4.043 27 C -0.242 4.242 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.415 0.585 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.106 0.894 49 H 0.382 0.618 50 H -0.305 1.305 51 H -0.268 1.268 52 H 0.154 0.846 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 -1.727 -0.684 4.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.116 3.884 4 C -0.277 4.277 5 C 0.136 3.864 6 O -0.225 6.225 7 C -0.012 4.012 8 C -0.122 4.122 9 H 0.115 0.885 10 C -0.183 4.183 11 C 0.027 3.973 12 H 0.117 0.883 13 N -0.344 5.344 14 C 0.400 3.600 15 O -0.482 6.482 16 O -0.285 6.285 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.156 4.156 22 C -0.199 4.199 23 C -0.177 4.177 24 O -0.355 6.355 25 Si 0.675 3.325 26 C -0.061 4.061 27 C -0.261 4.261 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.252 0.748 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.138 0.862 47 H 0.110 0.890 48 H 0.124 0.876 49 H 0.230 0.770 50 H -0.234 1.234 51 H -0.194 1.194 52 H 0.171 0.829 53 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.599 -1.236 -0.056 3.806 hybrid contribution -0.066 -0.170 -1.462 1.473 sum -3.664 -1.406 -1.517 4.208 Atomic orbital electron populations 1.23391 0.76030 1.05660 1.02652 1.86055 1.23775 1.26850 1.88010 1.18917 0.91726 0.84930 0.92841 1.20560 0.93260 0.97756 1.16084 1.18561 0.82788 0.92553 0.92495 1.86161 1.14754 1.33984 1.87577 1.23062 0.91058 0.84532 1.02550 1.22582 0.91470 0.99719 0.98444 0.88513 1.23580 0.96461 1.00950 0.97313 1.21883 0.85757 0.92789 0.96887 0.88317 1.44398 1.13341 1.54654 1.22033 1.18299 0.81247 0.77703 0.82758 1.90902 1.80951 1.55458 1.20891 1.86312 1.26840 1.65830 1.49547 1.22372 0.80338 0.96735 0.91500 1.22470 1.02084 0.96260 1.02843 1.21895 0.97856 0.99023 1.00721 1.22477 1.03896 1.00632 0.96736 1.23319 0.94741 0.97202 1.00312 1.19614 0.93360 0.94139 1.12774 1.25027 1.06223 0.98998 0.87475 1.86596 1.38553 1.93040 1.17326 0.94084 0.75663 0.73795 0.88914 1.20957 0.92409 0.98542 0.94158 1.21359 1.01456 0.91331 1.11941 0.86598 0.91132 0.91498 0.83933 0.90487 0.90914 0.92183 0.87811 0.74772 0.91882 0.89377 0.91726 0.91322 0.88189 0.91137 0.91770 0.89333 0.92122 0.86192 0.88976 0.87633 0.76962 1.23379 1.19440 0.82882 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.88 10.49 -92.42 -0.97 -1.85 16 3 C 0.16 0.52 6.68 22.49 0.15 0.67 16 4 C -0.26 -0.99 8.97 22.46 0.20 -0.79 16 5 C 0.18 0.88 6.66 22.49 0.15 1.03 16 6 O -0.31 -1.54 9.47 -92.39 -0.87 -2.41 16 7 C 0.06 -0.08 4.57 71.98 0.33 0.25 16 8 C -0.10 0.28 3.88 -10.27 -0.04 0.24 16 9 H 0.10 -0.10 8.14 -2.38 -0.02 -0.12 16 10 C -0.14 0.08 7.44 31.18 0.23 0.31 16 11 C 0.13 -0.05 4.33 45.58 0.20 0.15 16 12 H 0.10 0.24 7.47 -2.39 -0.02 0.23 16 13 N -0.69 -1.34 5.26 -567.34 -2.99 -4.32 16 14 C 0.65 5.21 8.06 129.79 1.05 6.26 16 15 O -0.59 -7.71 11.48 19.80 0.23 -7.48 16 16 O -0.37 -2.59 9.94 -55.43 -0.55 -3.14 16 17 C 0.13 0.52 1.13 -10.79 -0.01 0.51 16 18 C -0.18 -0.71 8.37 71.98 0.60 -0.10 16 19 C -0.14 0.13 8.85 71.98 0.64 0.77 16 20 C -0.18 -0.81 8.37 71.98 0.60 -0.21 16 21 C -0.12 0.67 7.39 31.12 0.23 0.90 16 22 C -0.20 -0.61 5.27 -19.75 -0.10 -0.71 16 23 C -0.07 -0.21 2.37 71.24 0.17 -0.04 16 24 O -0.55 -3.31 12.88 -148.98 -1.92 -5.23 16 25 Si 0.77 -0.59 30.24 68.60 2.07 1.48 16 26 C -0.04 0.01 8.65 22.24 0.19 0.20 16 27 C -0.24 0.02 9.04 22.38 0.20 0.22 16 28 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 30 H 0.07 -0.46 7.66 -2.38 -0.02 -0.47 16 31 H 0.14 0.22 6.30 -2.91 -0.02 0.20 16 32 H 0.08 -0.25 7.38 -2.39 -0.02 -0.27 16 33 H 0.07 -0.19 7.67 -2.38 -0.02 -0.21 16 34 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.10 -0.22 7.92 -2.39 -0.02 -0.24 16 36 H 0.42 -0.77 8.81 -92.70 -0.82 -1.58 16 37 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 40 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.06 0.63 5.88 -2.39 -0.01 0.61 16 44 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.12 -1.03 8.10 -2.39 -0.02 -1.05 16 47 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 48 H 0.11 0.46 7.83 -2.39 -0.02 0.44 16 49 H 0.38 -0.11 8.70 -74.06 -0.64 -0.75 16 50 H -0.31 -2.21 7.11 99.48 0.71 -1.51 16 51 H -0.27 -0.12 6.68 99.48 0.66 0.54 16 52 H 0.15 -0.66 4.85 -2.91 -0.01 -0.67 16 53 H 0.15 -0.77 6.29 -2.91 -0.02 -0.79 16 Total: 0.00 -19.86 421.36 0.37 -19.49 By element: Atomic # 1 Polarization: -6.69 SS G_CDS: -0.53 Total: -7.22 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.90 Total: 10.68 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -2.99 Total: -4.32 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -4.09 Total: -20.11 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.07 Total: 1.48 kcal Total: -19.86 0.37 -19.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_15734082.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.134 kcal (2) G-P(sol) polarization free energy of solvation -19.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds