Wall clock time and date at job start Tue Mar 9 2021 18:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99927 * 2 1 4 4 C 1.38752 * 120.02723 * 0.02562 * 3 2 1 5 5 C 1.38205 * 120.05124 * 179.72751 * 4 3 2 6 6 C 1.38158 * 120.10771 * 0.51027 * 5 4 3 7 7 C 1.50699 * 119.97178 * 179.76737 * 6 5 4 8 8 O 1.42895 * 109.47044 * 254.72591 * 7 6 5 9 9 Si 1.86300 * 109.46944 * 14.72518 * 7 6 5 10 10 H 1.48503 * 109.46942 * 180.02562 * 9 7 6 11 11 H 1.48503 * 109.47276 * 299.99703 * 9 7 6 12 12 H 1.48494 * 109.47372 * 59.99692 * 9 7 6 13 13 C 1.38793 * 120.05268 * 359.49006 * 6 5 4 14 14 O 1.35901 * 120.02560 * 180.27744 * 13 6 5 15 15 C 1.42899 * 117.00001 * 180.02562 * 14 13 6 16 16 C 1.53001 * 109.46884 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47161 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47682 * 179.97438 * 17 16 15 19 19 Si 1.63101 * 114.00497 * 179.97438 * 18 17 16 20 20 C 1.86303 * 109.47001 * 299.99941 * 19 18 17 21 21 C 1.86296 * 109.47121 * 59.99935 * 19 18 17 22 22 C 1.86298 * 109.47134 * 180.02562 * 19 18 17 23 23 C 1.53005 * 109.47400 * 59.99819 * 22 19 18 24 24 C 1.53007 * 109.46897 * 180.02562 * 22 19 18 25 25 C 1.52999 * 109.47123 * 299.99919 * 22 19 18 26 26 C 1.38607 * 119.94998 * 0.25711 * 13 6 5 27 27 H 1.08994 * 109.47164 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47009 * 300.00790 * 1 2 3 29 29 H 1.09006 * 109.46751 * 60.00091 * 1 2 3 30 30 H 1.08002 * 119.97624 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.94536 * 180.27772 * 5 4 3 32 32 H 1.09001 * 109.47358 * 134.71877 * 7 6 5 33 33 H 0.96705 * 114.00010 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.46859 * 299.99296 * 15 14 13 35 35 H 1.08995 * 109.47299 * 60.00100 * 15 14 13 36 36 H 1.09008 * 109.46955 * 299.99449 * 16 15 14 37 37 H 1.09000 * 109.47651 * 59.99555 * 16 15 14 38 38 H 1.09000 * 109.47195 * 299.99825 * 17 16 15 39 39 H 1.09004 * 109.47748 * 59.99387 * 17 16 15 40 40 H 1.08997 * 109.47246 * 59.99668 * 20 19 18 41 41 H 1.08990 * 109.47012 * 179.97438 * 20 19 18 42 42 H 1.09002 * 109.46842 * 300.00213 * 20 19 18 43 43 H 1.08998 * 109.47016 * 60.00034 * 21 19 18 44 44 H 1.09004 * 109.47007 * 180.02562 * 21 19 18 45 45 H 1.09005 * 109.46881 * 299.99878 * 21 19 18 46 46 H 1.08998 * 109.46820 * 60.00035 * 23 22 19 47 47 H 1.08997 * 109.46987 * 179.97438 * 23 22 19 48 48 H 1.09002 * 109.46788 * 300.00051 * 23 22 19 49 49 H 1.08993 * 109.47171 * 60.00143 * 24 22 19 50 50 H 1.09003 * 109.46543 * 180.02562 * 24 22 19 51 51 H 1.08992 * 109.46756 * 299.99467 * 24 22 19 52 52 H 1.08992 * 109.47470 * 59.99783 * 25 22 19 53 53 H 1.08997 * 109.47280 * 180.02562 * 25 22 19 54 54 H 1.09002 * 109.46760 * 299.99836 * 25 22 19 55 55 H 1.08000 * 120.06005 * 179.97438 * 26 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9177 3.6066 0.0062 6 6 3.2972 3.6821 0.0007 7 6 3.9776 5.0268 0.0017 8 8 4.5040 5.2951 -1.2994 9 14 2.7440 6.3465 0.4569 10 1 3.4143 7.6717 0.4572 11 1 1.6373 6.3525 -0.5333 12 1 2.1969 6.0676 1.8089 13 6 4.0570 2.5206 0.0002 14 8 5.4139 2.5955 0.0005 15 6 6.1319 1.3600 -0.0007 16 6 7.6353 1.6439 0.0005 17 6 8.4041 0.3211 -0.0014 18 8 9.8083 0.5861 -0.0008 19 14 10.7366 -0.7550 -0.0021 20 6 10.3677 -1.7670 1.5180 21 6 10.3682 -1.7638 -1.5243 22 6 12.5342 -0.2658 -0.0005 23 6 12.8364 0.5625 1.2500 24 6 13.4050 -1.5239 -0.0023 25 6 12.8376 0.5656 -1.2485 26 6 3.4306 1.2841 -0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 0.2123 2.3184 0.0005 31 1 1.3283 4.5115 0.0112 32 1 4.7899 5.0225 0.7285 33 1 4.9572 6.1463 -1.3725 34 1 5.8701 0.7868 0.8888 35 1 5.8704 0.7886 -0.8912 36 1 7.8975 2.2173 -0.8887 37 1 7.8966 2.2151 0.8913 38 1 8.1420 -0.2527 0.8875 39 1 8.1428 -0.2499 -0.8924 40 1 9.3159 -2.0531 1.5176 41 1 10.9877 -2.6633 1.5169 42 1 10.5832 -1.1766 2.4086 43 1 10.5840 -1.1717 -2.4136 44 1 10.9883 -2.6603 -1.5249 45 1 9.3164 -2.0500 -1.5247 46 1 12.6202 -0.0299 2.1391 47 1 13.8882 0.8482 1.2511 48 1 12.2160 1.4587 1.2508 49 1 13.1897 -2.1135 -0.8933 50 1 14.4568 -1.2377 -0.0009 51 1 13.1890 -2.1165 0.8866 52 1 12.2173 1.4618 -1.2477 53 1 13.8895 0.8514 -1.2478 54 1 12.6224 -0.0245 -2.1393 55 1 4.0201 0.3791 -0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_575374_18527724.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:47:34 Heat of formation + Delta-G solvation = -181.454853 kcal Electronic energy + Delta-G solvation = -30061.682808 eV Core-core repulsion = 25994.853753 eV Total energy + Delta-G solvation = -4066.829056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66945 -40.09574 -38.55942 -37.97424 -37.00380 -36.82032 -33.53162 -32.35863 -30.94727 -29.37365 -29.05503 -28.42142 -27.83396 -27.37208 -26.78146 -26.03963 -23.68966 -22.60771 -21.95190 -20.41428 -19.80833 -18.43444 -18.13324 -17.52496 -17.42622 -17.29646 -16.84476 -16.69977 -16.04950 -15.99601 -15.82258 -15.55157 -15.34613 -15.09011 -14.85304 -14.72877 -14.49676 -14.13409 -13.99171 -13.83433 -13.71261 -13.51016 -13.37547 -13.25232 -13.19572 -13.04766 -12.94658 -12.93378 -12.84936 -12.45623 -12.39416 -12.38786 -12.16481 -12.10116 -11.81109 -11.73731 -11.68533 -11.66356 -11.52954 -11.33091 -11.28832 -10.30617 -10.20250 -10.04903 -9.69037 -9.08429 0.18126 0.31450 1.19466 1.43273 1.47971 1.53105 1.79507 1.91146 2.07510 2.13353 2.30709 2.54067 2.55799 3.56998 3.68280 3.89652 3.91620 3.99365 4.02511 4.10536 4.13221 4.13484 4.18082 4.32474 4.33513 4.35989 4.38068 4.42871 4.45916 4.48232 4.48685 4.64492 4.74371 4.74760 4.76369 4.78817 4.79922 4.83428 4.83765 5.00040 5.00986 5.07092 5.09266 5.10060 5.10560 5.22090 5.22887 5.29558 5.35528 5.41831 5.45546 5.48835 5.55360 5.61250 5.65140 6.22902 6.39003 6.88632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.161 3.839 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.166 4.166 7 C -0.072 4.072 8 O -0.562 6.562 9 Si 0.982 3.018 10 H -0.255 1.255 11 H -0.259 1.259 12 H -0.256 1.256 13 C 0.183 3.817 14 O -0.310 6.310 15 C 0.051 3.949 16 C -0.117 4.117 17 C 0.081 3.919 18 O -0.640 6.640 19 Si 1.316 2.684 20 C -0.517 4.517 21 C -0.519 4.519 22 C -0.383 4.383 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.255 4.255 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.048 0.952 54 H 0.060 0.940 55 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 -1.505 1.318 3.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.115 3.885 4 C -0.261 4.261 5 C -0.071 4.071 6 C -0.167 4.167 7 C -0.181 4.181 8 O -0.370 6.370 9 Si 0.805 3.195 10 H -0.180 1.180 11 H -0.184 1.184 12 H -0.180 1.180 13 C 0.136 3.864 14 O -0.223 6.223 15 C -0.024 4.024 16 C -0.155 4.155 17 C 0.005 3.995 18 O -0.599 6.599 19 Si 1.446 2.554 20 C -0.619 4.619 21 C -0.620 4.620 22 C -0.426 4.426 23 C -0.194 4.194 24 C -0.198 4.198 25 C -0.194 4.194 26 C -0.275 4.275 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.067 0.933 54 H 0.079 0.921 55 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.893 -1.199 1.421 3.439 hybrid contribution 0.672 -0.381 -0.103 0.779 sum -2.221 -1.580 1.318 3.028 Atomic orbital electron populations 1.23397 0.76078 1.05716 1.02578 1.86052 1.23724 1.26579 1.88037 1.18871 0.91761 0.84848 0.93002 1.21336 1.01491 0.91305 1.11999 1.20917 0.92685 0.98583 0.94907 1.18829 0.92892 0.93104 1.11864 1.24646 1.04553 1.00099 0.88812 1.86485 1.77377 1.43769 1.29410 0.85291 0.77967 0.76550 0.79689 1.17955 1.18394 1.18008 1.18495 0.82712 0.92537 0.92622 1.86099 1.14687 1.33801 1.87708 1.22921 0.91666 0.84792 1.03028 1.21451 0.90641 0.98689 1.04682 1.21984 0.78990 0.96123 1.02374 1.85315 1.21898 1.61047 1.91678 0.76192 0.60848 0.53601 0.64741 1.27087 1.05557 1.11083 1.18191 1.27107 1.05525 1.11076 1.18316 1.25931 1.19343 0.99547 0.97761 1.21541 1.01412 0.99710 0.96748 1.21600 0.99505 0.96348 1.02307 1.21542 1.01412 0.99694 0.96792 1.20588 0.93228 0.97822 1.15826 0.86386 0.91315 0.91526 0.82759 0.83786 0.90511 0.75782 0.90159 0.90690 0.90620 0.90242 0.90732 0.90992 0.90881 0.90350 0.91144 0.91254 0.90346 0.90929 0.92042 0.93353 0.92589 0.91806 0.93163 0.91757 0.92614 0.93338 0.92118 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.34 10.50 -92.41 -0.97 -2.31 16 3 C 0.16 0.88 6.68 22.49 0.15 1.03 16 4 C -0.24 -0.79 9.04 22.38 0.20 -0.59 16 5 C -0.05 -0.23 8.65 22.24 0.19 -0.04 16 6 C -0.17 -1.11 5.31 -19.75 -0.10 -1.22 16 7 C -0.07 -0.24 2.37 71.24 0.17 -0.07 16 8 O -0.56 -2.52 12.86 -148.98 -1.92 -4.44 16 9 Si 0.98 0.26 25.48 68.60 1.75 2.01 16 10 H -0.26 0.01 7.11 99.48 0.71 0.72 16 11 H -0.26 -0.45 6.74 99.48 0.67 0.22 16 12 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 13 C 0.18 1.34 6.66 22.49 0.15 1.49 16 14 O -0.31 -1.96 9.46 -92.43 -0.87 -2.83 16 15 C 0.05 0.00 4.74 71.98 0.34 0.35 16 16 C -0.12 0.03 5.95 30.59 0.18 0.21 16 17 C 0.08 -0.19 5.12 71.98 0.37 0.17 16 18 O -0.64 -0.36 8.56 -148.98 -1.28 -1.63 16 19 Si 1.32 -3.13 8.45 68.60 0.58 -2.56 16 20 C -0.52 1.20 8.50 113.37 0.96 2.16 16 21 C -0.52 1.02 8.50 113.37 0.96 1.98 16 22 C -0.38 0.08 0.53 -10.79 -0.01 0.07 16 23 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 24 C -0.14 0.16 7.85 71.98 0.56 0.73 16 25 C -0.14 -0.14 7.85 71.98 0.56 0.42 16 26 C -0.26 -1.48 8.97 22.46 0.20 -1.28 16 27 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.07 -0.39 7.66 -2.38 -0.02 -0.40 16 29 H 0.07 -0.34 7.66 -2.38 -0.02 -0.36 16 30 H 0.15 -0.32 6.29 -2.91 -0.02 -0.34 16 31 H 0.14 0.12 4.87 -2.91 -0.01 0.10 16 32 H 0.08 0.15 7.82 -2.39 -0.02 0.13 16 33 H 0.39 -1.79 8.74 -74.05 -0.65 -2.44 16 34 H 0.08 -0.23 7.66 -2.39 -0.02 -0.25 16 35 H 0.07 -0.12 7.66 -2.39 -0.02 -0.14 16 36 H 0.08 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.07 -0.44 7.21 -2.39 -0.02 -0.45 16 39 H 0.07 -0.38 7.21 -2.38 -0.02 -0.40 16 40 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 41 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 42 H 0.07 -0.11 7.79 -2.39 -0.02 -0.12 16 43 H 0.07 -0.06 7.79 -2.39 -0.02 -0.08 16 44 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 45 H 0.07 -0.22 7.48 -2.38 -0.02 -0.24 16 46 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 47 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.06 0.09 7.97 -2.39 -0.02 0.07 16 49 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 50 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 52 H 0.05 0.10 7.96 -2.39 -0.02 0.08 16 53 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 54 H 0.06 -0.02 7.80 -2.39 -0.02 -0.04 16 55 H 0.15 0.36 6.30 -2.91 -0.02 0.34 16 Total: 0.00 -14.63 431.80 4.79 -9.83 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: 0.92 Total: -4.99 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.58 Total: 6.92 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -5.03 Total: -11.22 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.33 Total: -0.54 kcal Total: -14.63 4.79 -9.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_575374_18527724.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.622 kcal (2) G-P(sol) polarization free energy of solvation -14.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds