Wall clock time and date at job start Tue Mar 9 2021 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38216 * 119.94001 * 119.72573 * 4 2 1 6 6 C 1.38219 * 120.09668 * 179.72952 * 5 4 2 7 7 C 1.38620 * 119.96831 * 0.56809 * 6 5 4 8 8 O 1.35955 * 120.06127 * 179.72606 * 7 6 5 9 9 C 1.42898 * 117.00103 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47147 * 180.02562 * 9 8 7 11 11 H 1.09007 * 112.85164 * 43.79483 * 10 9 8 12 12 C 1.53780 * 113.61636 * 174.99867 * 10 9 8 13 13 C 1.53781 * 87.08236 * 139.97965 * 12 10 9 14 14 H 1.09003 * 113.61605 * 89.11381 * 13 12 10 15 15 O 1.42896 * 113.61709 * 220.02268 * 13 12 10 16 16 C 1.53785 * 113.61334 * 272.49927 * 10 9 8 17 17 C 1.38949 * 119.87274 * 359.70523 * 7 6 5 18 18 F 1.35103 * 120.04672 * 179.97438 * 17 7 6 19 19 C 1.38293 * 119.90909 * 0.02562 * 17 7 6 20 20 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 21 21 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 22 22 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 23 23 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 24 24 H 1.07999 * 119.94767 * 359.97438 * 5 4 2 25 25 H 1.08005 * 120.01966 * 180.29722 * 6 5 4 26 26 H 1.08998 * 109.46963 * 299.99632 * 9 8 7 27 27 H 1.08994 * 109.47413 * 59.99744 * 9 8 7 28 28 H 1.08994 * 113.61177 * 254.52529 * 12 10 9 29 29 H 1.08994 * 113.61108 * 25.34401 * 12 10 9 30 30 H 0.96698 * 114.00259 * 180.02562 * 15 13 12 31 31 H 1.09006 * 113.60988 * 334.56183 * 16 10 9 32 32 H 1.08999 * 113.61747 * 105.46562 * 16 10 9 33 33 H 1.07998 * 119.98694 * 179.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7212 -0.0359 -2.1423 6 6 3.1883 -0.6859 -3.2692 7 6 2.8546 -2.0128 -3.4914 8 8 3.3085 -2.6524 -4.6020 9 6 4.1247 -1.8959 -5.4983 10 6 4.5361 -2.7764 -6.6800 11 1 3.7119 -3.3738 -7.0699 12 6 5.3184 -2.0217 -7.7677 13 6 6.2095 -3.2697 -7.8822 14 1 5.8437 -4.0031 -8.6009 15 8 7.5963 -2.9694 -8.0509 16 6 5.8199 -3.5848 -6.4282 17 6 2.0558 -2.6881 -2.5767 18 9 1.7280 -3.9813 -2.7901 19 6 1.5959 -2.0344 -1.4482 20 1 -0.3932 0.4418 0.7651 21 1 1.7924 -0.5139 0.8900 22 1 1.5615 2.4679 -1.2085 23 1 1.5881 2.4585 1.2242 24 1 2.9770 0.9995 -1.9721 25 1 3.8094 -0.1589 -3.9785 26 1 3.5625 -1.0368 -5.8643 27 1 5.0159 -1.5504 -4.9745 28 1 4.7335 -1.8190 -8.6649 29 1 5.8431 -1.1413 -7.3967 30 1 8.1618 -3.7504 -8.1239 31 1 6.4830 -3.1325 -5.6907 32 1 5.6399 -4.6439 -6.2440 33 1 0.9746 -2.5579 -0.7367 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_7834706_11354858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:57:57 Heat of formation + Delta-G solvation = -106.904645 kcal Electronic energy + Delta-G solvation = -18523.751910 eV Core-core repulsion = 15239.052487 eV Total energy + Delta-G solvation = -3284.699423 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.66551 -41.34836 -40.33488 -39.02800 -37.38568 -36.05987 -32.07643 -31.83871 -29.51704 -26.85548 -26.38797 -24.62123 -23.12800 -22.28306 -20.72024 -19.35762 -18.71212 -18.60076 -17.82344 -17.76842 -17.24512 -16.54565 -16.26345 -16.05532 -15.88815 -15.76138 -15.39634 -14.73226 -14.32655 -14.09029 -13.82407 -13.65657 -13.54724 -13.32109 -12.78693 -12.69623 -12.50275 -12.29100 -12.18030 -11.82267 -11.72054 -11.32424 -10.82962 -10.59203 -9.97122 -9.19905 -5.03369 0.06533 0.10938 1.19948 1.53320 1.89199 1.92636 2.39545 3.11130 3.20058 3.24395 3.35964 3.46102 3.58905 3.66215 3.73600 3.82447 4.00689 4.07354 4.12960 4.16481 4.27723 4.29558 4.47702 4.58568 4.67202 4.68951 4.81558 4.88836 4.93596 5.00898 5.03931 5.26012 5.30220 5.57784 6.23843 6.37261 6.63693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.073 4.073 3 Si 0.683 3.317 4 C -0.084 4.084 5 C -0.083 4.083 6 C -0.178 4.178 7 C 0.105 3.895 8 O -0.304 6.304 9 C 0.069 3.931 10 C -0.110 4.110 11 H 0.106 0.894 12 C -0.119 4.119 13 C 0.076 3.924 14 H 0.085 0.915 15 O -0.560 6.560 16 C -0.164 4.164 17 C 0.070 3.930 18 F -0.130 7.130 19 C -0.087 4.087 20 H 0.381 0.619 21 H 0.079 0.921 22 H -0.254 1.254 23 H -0.259 1.259 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.381 0.619 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 1.514 0.686 3.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.182 4.182 3 Si 0.584 3.416 4 C -0.085 4.085 5 C -0.100 4.100 6 C -0.197 4.197 7 C 0.059 3.941 8 O -0.217 6.217 9 C -0.006 4.006 10 C -0.129 4.129 11 H 0.125 0.875 12 C -0.157 4.157 13 C 0.017 3.983 14 H 0.103 0.897 15 O -0.366 6.366 16 C -0.201 4.201 17 C 0.050 3.950 18 F -0.108 7.108 19 C -0.106 4.106 20 H 0.229 0.771 21 H 0.097 0.903 22 H -0.178 1.178 23 H -0.184 1.184 24 H 0.154 0.846 25 H 0.161 0.839 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.744 2.402 0.073 3.648 hybrid contribution -0.992 -0.820 0.477 1.373 sum 1.752 1.582 0.550 2.424 Atomic orbital electron populations 1.86593 1.17680 1.80200 1.49869 1.24758 0.84595 1.10988 0.97903 0.95107 0.91616 0.74377 0.80536 1.18974 0.99689 0.93353 0.96445 1.20800 0.96816 0.99532 0.92878 1.21079 1.05039 0.93120 1.00420 1.19010 0.95582 0.91731 0.87802 1.86151 1.64904 1.39934 1.30726 1.22918 0.93832 0.94481 0.89347 1.22334 0.97660 0.98277 0.94582 0.87546 1.23065 0.96357 0.97814 0.98453 1.23287 0.81869 0.97619 0.95520 0.89712 1.86516 1.17482 1.36722 1.95861 1.23787 0.96709 1.01277 0.98366 1.16970 1.01963 0.79998 0.96057 1.91526 1.91063 1.33475 1.94766 1.20849 0.99213 0.94649 0.95912 0.77050 0.90259 1.17822 1.18449 0.84583 0.83908 0.91305 0.91207 0.90075 0.88731 0.77153 0.88993 0.90698 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.44 12.74 -35.23 -0.45 -0.89 16 2 C -0.07 0.04 2.81 36.01 0.10 0.14 16 3 Si 0.68 -1.06 29.78 -169.99 -5.06 -6.12 16 4 C -0.08 -0.09 5.42 -104.60 -0.57 -0.65 16 5 C -0.08 0.00 8.66 -39.60 -0.34 -0.34 16 6 C -0.18 -0.04 9.04 -39.45 -0.36 -0.40 16 7 C 0.11 0.26 6.69 -39.18 -0.26 0.00 16 8 O -0.30 -0.79 10.00 -19.60 -0.20 -0.98 16 9 C 0.07 -0.04 4.58 37.16 0.17 0.13 16 10 C -0.11 0.10 4.01 -89.80 -0.36 -0.26 16 11 H 0.11 -0.08 8.14 -51.93 -0.42 -0.50 16 12 C -0.12 0.15 7.47 -25.92 -0.19 -0.05 16 13 C 0.08 -0.07 5.21 -25.92 -0.14 -0.20 16 14 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 15 O -0.56 -0.17 13.67 -35.23 -0.48 -0.65 16 16 C -0.16 0.13 7.46 -25.91 -0.19 -0.06 16 17 C 0.07 0.25 7.31 -39.30 -0.29 -0.04 16 18 F -0.13 -0.67 17.11 2.25 0.04 -0.63 16 19 C -0.09 -0.19 9.58 -39.54 -0.38 -0.57 16 20 H 0.38 -1.22 8.74 45.56 0.40 -0.82 16 21 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 22 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 23 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 24 H 0.14 -0.31 4.87 -52.49 -0.26 -0.57 16 25 H 0.14 -0.32 6.30 -52.48 -0.33 -0.65 16 26 H 0.07 -0.12 7.66 -51.93 -0.40 -0.52 16 27 H 0.07 -0.11 7.36 -51.93 -0.38 -0.50 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 29 H 0.09 -0.10 8.10 -51.93 -0.42 -0.52 16 30 H 0.38 -1.37 9.12 45.56 0.42 -0.95 16 31 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 32 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 284.42 15.07 4.29 4.29 Total: 0.00 -7.18 284.42 -7.78 -14.96 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -3.11 Total: -7.67 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.81 Total: -2.30 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: -1.13 Total: -2.53 kcal Atomic # 9 Polarization: -0.67 SS G_CDS: 0.04 Total: -0.63 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: -5.06 Total: -6.12 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -7.18 -7.78 -14.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_11354858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.948 kcal (2) G-P(sol) polarization free energy of solvation -7.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds