Wall clock time and date at job start Tue Mar 9 2021 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38216 * 119.94001 * 119.72573 * 4 2 1 6 6 C 1.38219 * 120.09668 * 179.72952 * 5 4 2 7 7 C 1.38620 * 119.96831 * 0.56809 * 6 5 4 8 8 O 1.35955 * 120.06127 * 179.72606 * 7 6 5 9 9 C 1.42898 * 117.00103 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47147 * 180.02562 * 9 8 7 11 11 H 1.09007 * 112.85164 * 43.79483 * 10 9 8 12 12 C 1.53780 * 113.61636 * 174.99867 * 10 9 8 13 13 C 1.53781 * 87.08236 * 139.97965 * 12 10 9 14 14 H 1.09003 * 113.61605 * 89.11381 * 13 12 10 15 15 O 1.42896 * 113.61709 * 220.02268 * 13 12 10 16 16 C 1.53785 * 113.61334 * 272.49927 * 10 9 8 17 17 C 1.38949 * 119.87274 * 359.70523 * 7 6 5 18 18 F 1.35103 * 120.04672 * 179.97438 * 17 7 6 19 19 C 1.38293 * 119.90909 * 0.02562 * 17 7 6 20 20 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 21 21 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 22 22 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 23 23 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 24 24 H 1.07999 * 119.94767 * 359.97438 * 5 4 2 25 25 H 1.08005 * 120.01966 * 180.29722 * 6 5 4 26 26 H 1.08998 * 109.46963 * 299.99632 * 9 8 7 27 27 H 1.08994 * 109.47413 * 59.99744 * 9 8 7 28 28 H 1.08994 * 113.61177 * 254.52529 * 12 10 9 29 29 H 1.08994 * 113.61108 * 25.34401 * 12 10 9 30 30 H 0.96698 * 114.00259 * 180.02562 * 15 13 12 31 31 H 1.09006 * 113.60988 * 334.56183 * 16 10 9 32 32 H 1.08999 * 113.61747 * 105.46562 * 16 10 9 33 33 H 1.07998 * 119.98694 * 179.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7212 -0.0359 -2.1423 6 6 3.1883 -0.6859 -3.2692 7 6 2.8546 -2.0128 -3.4914 8 8 3.3085 -2.6524 -4.6020 9 6 4.1247 -1.8959 -5.4983 10 6 4.5361 -2.7764 -6.6800 11 1 3.7119 -3.3738 -7.0699 12 6 5.3184 -2.0217 -7.7677 13 6 6.2095 -3.2697 -7.8822 14 1 5.8437 -4.0031 -8.6009 15 8 7.5963 -2.9694 -8.0509 16 6 5.8199 -3.5848 -6.4282 17 6 2.0558 -2.6881 -2.5767 18 9 1.7280 -3.9813 -2.7901 19 6 1.5959 -2.0344 -1.4482 20 1 -0.3932 0.4418 0.7651 21 1 1.7924 -0.5139 0.8900 22 1 1.5615 2.4679 -1.2085 23 1 1.5881 2.4585 1.2242 24 1 2.9770 0.9995 -1.9721 25 1 3.8094 -0.1589 -3.9785 26 1 3.5625 -1.0368 -5.8643 27 1 5.0159 -1.5504 -4.9745 28 1 4.7335 -1.8190 -8.6649 29 1 5.8431 -1.1413 -7.3967 30 1 8.1618 -3.7504 -8.1239 31 1 6.4830 -3.1325 -5.6907 32 1 5.6399 -4.6439 -6.2440 33 1 0.9746 -2.5579 -0.7367 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_7834706_11354858.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:57:57 Heat of formation + Delta-G solvation = -106.999125 kcal Electronic energy + Delta-G solvation = -18523.756007 eV Core-core repulsion = 15239.052487 eV Total energy + Delta-G solvation = -3284.703520 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93296 -41.38018 -40.28673 -39.04702 -37.39287 -36.01319 -32.11670 -31.90229 -29.47630 -26.76816 -26.38329 -24.63055 -23.14969 -22.31158 -20.64272 -19.41184 -18.68776 -18.57151 -17.93774 -17.83677 -17.32040 -16.54606 -16.33024 -16.11871 -15.89073 -15.76259 -15.42747 -14.71855 -14.32063 -14.14664 -13.90631 -13.67345 -13.46008 -13.33945 -12.78163 -12.64065 -12.49121 -12.28261 -12.16154 -11.78856 -11.69712 -11.23468 -10.74956 -10.53876 -10.05512 -9.29342 -4.91228 -0.02702 0.04250 1.29217 1.62606 1.91389 1.96765 2.33797 3.08140 3.28933 3.30906 3.45124 3.55145 3.57906 3.71281 3.80906 3.93324 4.02098 4.07667 4.22839 4.23570 4.32926 4.38502 4.48763 4.67207 4.75491 4.78382 4.79818 4.88600 4.97316 4.99073 5.11725 5.24299 5.35462 5.52591 6.19638 6.58361 6.86507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.087 4.087 3 Si 0.772 3.228 4 C -0.093 4.093 5 C -0.080 4.080 6 C -0.172 4.172 7 C 0.094 3.906 8 O -0.325 6.325 9 C 0.064 3.936 10 C -0.108 4.108 11 H 0.102 0.898 12 C -0.117 4.117 13 C 0.074 3.926 14 H 0.096 0.904 15 O -0.580 6.580 16 C -0.164 4.164 17 C 0.038 3.962 18 F -0.148 7.148 19 C -0.095 4.095 20 H 0.397 0.603 21 H 0.098 0.902 22 H -0.293 1.293 23 H -0.287 1.287 24 H 0.161 0.839 25 H 0.170 0.830 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.395 0.605 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 2.651 0.727 4.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.194 4.194 3 Si 0.676 3.324 4 C -0.093 4.093 5 C -0.097 4.097 6 C -0.191 4.191 7 C 0.047 3.953 8 O -0.239 6.239 9 C -0.011 4.011 10 C -0.127 4.127 11 H 0.120 0.880 12 C -0.154 4.154 13 C 0.015 3.985 14 H 0.113 0.887 15 O -0.388 6.388 16 C -0.202 4.202 17 C 0.019 3.981 18 F -0.127 7.127 19 C -0.114 4.114 20 H 0.247 0.753 21 H 0.116 0.884 22 H -0.220 1.220 23 H -0.214 1.214 24 H 0.178 0.822 25 H 0.187 0.813 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.245 0.755 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.426 3.511 0.127 4.907 hybrid contribution -1.218 -1.153 0.474 1.743 sum 2.208 2.359 0.601 3.286 Atomic orbital electron populations 1.86548 1.18520 1.80813 1.51152 1.25064 0.84152 1.12267 0.97956 0.94143 0.90082 0.71408 0.76775 1.19270 0.99743 0.92996 0.97317 1.21128 0.95834 1.00501 0.92258 1.21392 1.04625 0.92206 1.00862 1.19179 0.95753 0.92567 0.87767 1.86123 1.65466 1.41154 1.31128 1.23124 0.94130 0.94716 0.89080 1.22305 0.97406 0.98309 0.94668 0.87961 1.23060 0.96206 0.97633 0.98534 1.23386 0.81564 0.98052 0.95519 0.88663 1.86471 1.18225 1.38229 1.95885 1.23768 0.96809 1.01056 0.98535 1.17332 1.03678 0.79686 0.97433 1.91464 1.91456 1.34764 1.95005 1.20949 0.99425 0.95348 0.95675 0.75273 0.88388 1.22039 1.21363 0.82171 0.81267 0.89964 0.90041 0.89325 0.88780 0.75503 0.89443 0.91067 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.85 12.74 -148.98 -1.90 -2.75 16 2 C -0.09 0.15 2.81 71.24 0.20 0.35 16 3 Si 0.77 -3.24 29.78 68.60 2.04 -1.19 16 4 C -0.09 -0.18 5.42 -19.85 -0.11 -0.29 16 5 C -0.08 0.08 8.66 22.26 0.19 0.27 16 6 C -0.17 0.04 9.04 22.36 0.20 0.24 16 7 C 0.09 0.54 6.69 22.53 0.15 0.69 16 8 O -0.32 -1.95 10.00 -93.04 -0.93 -2.88 16 9 C 0.06 -0.09 4.58 71.98 0.33 0.24 16 10 C -0.11 0.19 4.01 -10.27 -0.04 0.15 16 11 H 0.10 -0.10 8.14 -2.38 -0.02 -0.12 16 12 C -0.12 0.33 7.47 31.12 0.23 0.57 16 13 C 0.07 -0.14 5.21 31.12 0.16 0.02 16 14 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 15 O -0.58 -0.26 13.67 -148.98 -2.04 -2.29 16 16 C -0.16 0.20 7.46 31.12 0.23 0.44 16 17 C 0.04 0.34 7.31 22.45 0.16 0.50 16 18 F -0.15 -1.89 17.11 44.97 0.77 -1.12 16 19 C -0.10 -0.52 9.58 22.30 0.21 -0.31 16 20 H 0.40 -2.64 8.74 -74.05 -0.65 -3.28 16 21 H 0.10 -0.55 7.96 -2.38 -0.02 -0.57 16 22 H -0.29 -0.72 7.11 99.48 0.71 -0.02 16 23 H -0.29 -0.09 7.11 99.48 0.71 0.62 16 24 H 0.16 -1.04 4.87 -2.91 -0.01 -1.06 16 25 H 0.17 -1.06 6.30 -2.91 -0.02 -1.08 16 26 H 0.08 -0.35 7.66 -2.39 -0.02 -0.37 16 27 H 0.08 -0.32 7.36 -2.39 -0.02 -0.34 16 28 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.09 -0.25 8.10 -2.39 -0.02 -0.27 16 30 H 0.39 -2.86 9.12 -74.06 -0.68 -3.53 16 31 H 0.09 -0.03 7.90 -2.38 -0.02 -0.05 16 32 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 Total: 0.00 -17.50 284.42 -0.26 -17.76 By element: Atomic # 1 Polarization: -10.26 SS G_CDS: -0.14 Total: -10.39 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 1.93 Total: 2.87 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -4.87 Total: -7.92 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.77 Total: -1.12 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.04 Total: -1.19 kcal Total: -17.50 -0.26 -17.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_11354858.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.239 kcal (2) G-P(sol) polarization free energy of solvation -17.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds