Wall clock time and date at job start Tue Mar 9 2021 18:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.08994 * 112.85028 * 334.67598 * 9 8 6 11 11 C 1.53783 * 113.61033 * 105.86682 * 9 8 6 12 12 C 1.54054 * 86.98425 * 89.16273 * 11 9 8 13 13 H 1.09000 * 113.68585 * 270.87149 * 12 11 9 14 14 C 1.52996 * 113.61853 * 139.98153 * 12 11 9 15 15 O 1.42896 * 109.47721 * 87.50379 * 14 12 11 16 16 C 1.35948 * 117.00279 * 180.02562 * 15 14 12 17 17 C 1.38917 * 120.06378 * 179.72266 * 16 15 14 18 18 F 1.35101 * 120.04210 * 0.02562 * 17 16 15 19 19 C 1.38334 * 119.90353 * 179.76565 * 17 16 15 20 20 C 1.38255 * 120.03143 * 0.48940 * 19 17 16 21 21 C 1.50699 * 119.93675 * 179.77043 * 20 19 17 22 22 O 1.42900 * 109.46688 * 245.01826 * 21 20 19 23 23 Si 1.86300 * 109.47032 * 5.01515 * 21 20 19 24 24 C 1.38266 * 120.12607 * 359.78312 * 20 19 17 25 25 C 1.38185 * 120.09292 * 359.95966 * 24 20 19 26 26 C 1.53775 * 113.61495 * 203.47401 * 9 8 6 27 27 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 28 28 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 29 29 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 32 32 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 33 33 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 34 34 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 35 35 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 37 37 H 1.09005 * 113.61495 * 203.66674 * 11 9 8 38 38 H 1.09001 * 113.61494 * 334.56743 * 11 9 8 39 39 H 1.09000 * 109.47281 * 207.50913 * 14 12 11 40 40 H 1.09005 * 109.47231 * 327.49867 * 14 12 11 41 41 H 1.08000 * 119.97916 * 180.23206 * 19 17 16 42 42 H 1.08996 * 109.47382 * 125.02122 * 21 20 19 43 43 H 0.96696 * 114.00001 * 179.97438 * 22 21 20 44 44 H 1.48502 * 109.99709 * 178.68540 * 23 21 20 45 45 H 1.48500 * 110.00190 * 299.99993 * 23 21 20 46 46 H 1.07997 * 119.95084 * 179.97438 * 24 20 19 47 47 H 1.08000 * 120.00994 * 180.02562 * 25 24 20 48 48 H 1.08997 * 113.61448 * 25.43517 * 26 9 8 49 49 H 1.09004 * 113.61422 * 156.34001 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 0.7361 -4.3046 2.0713 11 6 2.7996 -5.0644 2.3174 12 6 3.1635 -4.9321 3.8085 13 1 3.8700 -4.1288 4.0172 14 6 3.5602 -6.2571 4.4626 15 8 4.9605 -6.4770 4.2820 16 6 5.4787 -7.6190 4.8069 17 6 6.8317 -7.8995 4.6636 18 9 7.6348 -7.0373 4.0026 19 6 7.3564 -9.0601 5.2032 20 6 6.5332 -9.9444 5.8754 21 6 7.1061 -11.2107 6.4580 22 8 6.5443 -12.3403 5.7869 23 14 8.9560 -11.2142 6.2376 24 6 5.1853 -9.6693 6.0139 25 6 4.6567 -8.5089 5.4815 26 6 1.6962 -4.5404 4.0508 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2488 36 1 2.6225 -2.2349 3.0862 37 1 2.4482 -6.0583 2.0402 38 1 3.5666 -4.6824 1.6437 39 1 3.3328 -6.2189 5.5279 40 1 3.0020 -7.0716 4.0010 41 1 8.4088 -9.2775 5.0957 42 1 6.8665 -11.2629 7.5200 43 1 6.8689 -13.1917 6.1107 44 1 9.5364 -12.4430 6.8362 45 1 9.2956 -11.1434 4.7937 46 1 4.5447 -10.3622 6.5392 47 1 3.6037 -8.2951 5.5909 48 1 1.5731 -3.7357 4.7755 49 1 1.0438 -5.3913 4.2467 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_7834706_15734082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:58:11 Heat of formation + Delta-G solvation = -136.566829 kcal Electronic energy + Delta-G solvation = -31030.377015 eV Core-core repulsion = 26454.369004 eV Total energy + Delta-G solvation = -4576.008010 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.90315 -41.99699 -41.30317 -40.35575 -39.08503 -37.90374 -37.31669 -35.39519 -34.14192 -32.21043 -31.74837 -29.47900 -28.39937 -28.32991 -26.78273 -26.41883 -25.02188 -23.97687 -22.99696 -22.32962 -21.19539 -20.34988 -19.46644 -19.29831 -18.59314 -17.99679 -17.98581 -17.61607 -17.32779 -17.20053 -16.68114 -16.24883 -16.19144 -16.07252 -15.95148 -15.54108 -15.42103 -15.26287 -15.02805 -14.55225 -14.34226 -14.18857 -14.02376 -13.69889 -13.54609 -13.45667 -13.37531 -13.22783 -13.04474 -12.95030 -12.89821 -12.71654 -12.54634 -12.36903 -12.23358 -12.05419 -11.89658 -11.85631 -11.66501 -11.42974 -11.21922 -11.15588 -10.50728 -10.22200 -10.06105 -9.25040 -4.95653 0.01078 0.06026 1.10072 1.26632 1.55466 1.68477 1.91784 1.97371 2.36874 3.05189 3.07987 3.35769 3.37815 3.49104 3.63078 3.71027 3.73965 3.75691 3.78204 3.86015 3.91356 3.95501 4.07785 4.23350 4.32868 4.40010 4.43246 4.45277 4.55179 4.58228 4.59106 4.71751 4.73447 4.73806 4.76374 4.80334 4.84732 4.86754 4.92478 4.96576 5.01518 5.05149 5.06142 5.14634 5.24008 5.28782 5.31794 5.44466 5.54347 5.58969 6.24750 6.33855 6.59531 7.29163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.645 3.355 7 O -0.593 6.593 8 N -0.685 5.685 9 C 0.130 3.870 10 H 0.097 0.903 11 C -0.150 4.150 12 C -0.106 4.106 13 H 0.099 0.901 14 C 0.060 3.940 15 O -0.325 6.325 16 C 0.097 3.903 17 C 0.042 3.958 18 F -0.146 7.146 19 C -0.118 4.118 20 C -0.094 4.094 21 C -0.070 4.070 22 O -0.556 6.556 23 Si 0.742 3.258 24 C -0.058 4.058 25 C -0.177 4.177 26 C -0.113 4.113 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.397 0.603 44 H -0.279 1.279 45 H -0.306 1.306 46 H 0.156 0.844 47 H 0.168 0.832 48 H 0.095 0.905 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 0.306 6.950 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.344 5.344 9 C 0.025 3.975 10 H 0.115 0.885 11 C -0.189 4.189 12 C -0.124 4.124 13 H 0.117 0.883 14 C -0.014 4.014 15 O -0.239 6.239 16 C 0.050 3.950 17 C 0.023 3.977 18 F -0.125 7.125 19 C -0.136 4.136 20 C -0.094 4.094 21 C -0.179 4.179 22 O -0.366 6.366 23 Si 0.649 3.351 24 C -0.076 4.076 25 C -0.195 4.195 26 C -0.151 4.151 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.127 0.873 43 H 0.248 0.752 44 H -0.205 1.205 45 H -0.234 1.234 46 H 0.173 0.827 47 H 0.186 0.814 48 H 0.114 0.886 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.855 0.384 5.702 6.008 hybrid contribution 0.126 -0.894 -0.406 0.990 sum -1.730 -0.510 5.295 5.594 Atomic orbital electron populations 1.22469 0.93838 1.03728 1.03609 1.22372 0.94611 0.92572 0.81400 1.21893 1.02396 0.90836 1.04336 1.22477 1.01531 1.02257 0.97506 1.86313 1.71556 1.23245 1.47313 1.18326 0.78560 0.80740 0.82465 1.90905 1.42279 1.71026 1.44145 1.44398 1.54983 1.12107 1.22907 1.21862 0.98411 0.78003 0.99179 0.88513 1.23642 0.98196 1.00372 0.96656 1.22666 0.97814 0.96593 0.95339 0.88310 1.23204 0.77625 0.98251 1.02299 1.86133 1.27612 1.36732 1.73466 1.19170 0.91452 0.88293 0.96088 1.17146 0.86552 0.91553 1.02486 1.91473 1.72952 1.69052 1.79022 1.20956 1.01256 0.92963 0.98433 1.19168 0.94452 0.95228 1.00589 1.24724 1.09074 0.84759 0.99383 1.86538 1.68607 1.17122 1.64352 0.94311 0.74382 0.86561 0.79871 1.21171 0.94145 0.95665 0.96617 1.21487 1.01376 0.95075 1.01582 1.23305 0.94479 1.02932 0.94355 0.91776 0.89430 0.91770 0.91316 0.88247 0.91040 0.91851 0.89362 0.92154 0.74660 0.87920 0.92684 0.89267 0.90062 0.83412 0.87255 0.75196 1.20543 1.23409 0.82669 0.81432 0.88612 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.63 8.37 71.98 0.60 -0.03 16 2 C 0.13 0.47 1.13 -10.79 -0.01 0.46 16 3 C -0.14 0.20 8.85 71.98 0.64 0.83 16 4 C -0.18 -0.80 8.37 71.98 0.60 -0.19 16 5 O -0.37 -2.34 9.94 -55.47 -0.55 -2.89 16 6 C 0.65 4.80 8.06 129.79 1.05 5.85 16 7 O -0.59 -7.55 11.50 19.80 0.23 -7.33 16 8 N -0.68 -0.59 5.27 -567.60 -2.99 -3.58 16 9 C 0.13 -0.21 4.30 45.52 0.20 -0.02 16 10 H 0.10 0.14 7.50 -2.39 -0.02 0.12 16 11 C -0.15 0.19 7.45 31.21 0.23 0.42 16 12 C -0.11 0.51 3.90 -10.17 -0.04 0.47 16 13 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 14 C 0.06 -0.27 4.58 71.98 0.33 0.06 16 15 O -0.33 -1.32 10.00 -92.97 -0.93 -2.25 16 16 C 0.10 0.40 6.69 22.53 0.15 0.55 16 17 C 0.04 0.31 7.31 22.46 0.16 0.47 16 18 F -0.15 -1.65 17.11 44.97 0.77 -0.88 16 19 C -0.12 -0.44 8.64 22.30 0.19 -0.25 16 20 C -0.09 -0.09 5.38 -19.85 -0.11 -0.20 16 21 C -0.07 0.18 2.79 71.24 0.20 0.38 16 22 O -0.56 0.06 12.81 -148.98 -1.91 -1.85 16 23 Si 0.74 -1.30 29.85 68.60 2.05 0.75 16 24 C -0.06 0.07 9.68 22.26 0.22 0.29 16 25 C -0.18 0.24 9.04 22.36 0.20 0.45 16 26 C -0.11 0.94 7.38 31.12 0.23 1.17 16 27 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.09 0.00 8.14 -2.38 -0.02 -0.01 16 29 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 30 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.06 0.62 5.88 -2.39 -0.01 0.61 16 34 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 36 H 0.42 -1.40 8.81 -92.71 -0.82 -2.22 16 37 H 0.10 -0.28 7.90 -2.38 -0.02 -0.30 16 38 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.09 -0.76 7.66 -2.39 -0.02 -0.77 16 40 H 0.08 -0.57 7.37 -2.38 -0.02 -0.59 16 41 H 0.15 0.24 4.86 -2.91 -0.01 0.23 16 42 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 43 H 0.40 -3.18 8.74 -74.06 -0.65 -3.83 16 44 H -0.28 -0.46 7.11 99.48 0.71 0.25 16 45 H -0.31 -2.12 7.05 99.48 0.70 -1.41 16 46 H 0.16 -0.85 8.06 -2.91 -0.02 -0.87 16 47 H 0.17 -1.27 6.30 -2.91 -0.02 -1.29 16 48 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.12 -1.46 8.10 -2.39 -0.02 -1.48 16 Total: 0.00 -21.81 399.00 1.06 -20.75 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -0.45 Total: -13.43 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.84 Total: 10.70 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -2.99 Total: -3.58 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -3.16 Total: -14.32 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.77 Total: -0.88 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.05 Total: 0.75 kcal Total: -21.81 1.06 -20.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_7834706_15734082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.813 kcal (2) G-P(sol) polarization free energy of solvation -21.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds