Wall clock time and date at job start Tue Mar 9 2021 19:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47068 * 240.00421 * 2 1 3 5 5 Si 1.86298 * 109.47168 * 120.00350 * 2 1 3 6 6 C 1.86299 * 109.47115 * 299.99888 * 5 2 1 7 7 C 1.86300 * 109.47026 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47360 * 60.00062 * 5 2 1 9 9 C 1.42891 * 114.00171 * 180.02562 * 8 5 2 10 10 C 1.53007 * 109.47458 * 179.97438 * 9 8 5 11 11 O 1.42904 * 109.46659 * 64.99669 * 10 9 8 12 12 C 1.35841 * 116.99543 * 180.02562 * 11 10 9 13 13 C 1.36607 * 120.21091 * 269.71981 * 12 11 10 14 14 C 1.50697 * 119.53654 * 0.25805 * 13 12 11 15 15 O 1.42901 * 109.46798 * 285.00195 * 14 13 12 16 16 Si 1.86294 * 109.47488 * 164.99808 * 14 13 12 17 17 H 1.48497 * 109.47467 * 59.99737 * 16 14 13 18 18 H 1.48497 * 109.47081 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46900 * 300.00025 * 16 14 13 20 20 C 1.39249 * 120.93714 * 180.32746 * 13 12 11 21 21 C 1.36235 * 121.04744 * 359.92424 * 20 13 12 22 22 Cl 1.73605 * 120.12798 * 180.02562 * 21 20 13 23 23 C 1.40649 * 119.74312 * 0.04725 * 21 20 13 24 24 C 1.40486 * 121.27025 * 179.97438 * 23 21 20 25 25 C 1.36144 * 119.65183 * 180.02562 * 24 23 21 26 26 C 1.39315 * 120.97429 * 0.02562 * 25 24 23 27 27 C 1.36172 * 120.96982 * 359.97438 * 26 25 24 28 28 C 1.40380 * 119.66150 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46824 * 299.99982 * 1 2 3 30 30 H 1.08998 * 109.47098 * 59.99222 * 1 2 3 31 31 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47272 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47731 * 300.00390 * 3 2 1 34 34 H 1.09002 * 109.47218 * 60.00259 * 3 2 1 35 35 H 1.09003 * 109.46992 * 299.99836 * 4 2 1 36 36 H 1.08998 * 109.47237 * 59.99532 * 4 2 1 37 37 H 1.09002 * 109.47421 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.47168 * 180.02562 * 6 5 2 39 39 H 1.09003 * 109.47118 * 300.00138 * 6 5 2 40 40 H 1.09002 * 109.47364 * 59.99688 * 6 5 2 41 41 H 1.08999 * 109.47541 * 299.99634 * 7 5 2 42 42 H 1.09007 * 109.47369 * 60.00310 * 7 5 2 43 43 H 1.09003 * 109.46919 * 179.97438 * 7 5 2 44 44 H 1.08999 * 109.47761 * 59.99863 * 9 8 5 45 45 H 1.08998 * 109.46914 * 299.99568 * 9 8 5 46 46 H 1.08994 * 109.46968 * 305.00117 * 10 9 8 47 47 H 1.08997 * 109.47468 * 184.99667 * 10 9 8 48 48 H 1.08999 * 109.46731 * 44.99234 * 14 13 12 49 49 H 0.96706 * 113.99873 * 299.99085 * 15 14 13 50 50 H 1.08004 * 119.47952 * 179.97438 * 20 13 12 51 51 H 1.07994 * 120.17745 * 0.03171 * 24 23 21 52 52 H 1.08006 * 119.51524 * 180.02562 * 25 24 23 53 53 H 1.08000 * 119.51811 * 179.97438 * 26 25 24 54 54 H 1.08000 * 120.17074 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0286 -3.1814 2.6518 10 6 1.4628 -4.5992 2.5474 11 8 2.0312 -5.2565 1.4129 12 6 1.6311 -6.5327 1.1752 13 6 2.3136 -7.5807 1.7248 14 6 3.5095 -7.3107 2.6011 15 8 4.6191 -6.9254 1.7872 16 14 3.9430 -8.8525 3.5527 17 1 4.2631 -9.9474 2.6021 18 1 5.1211 -8.5861 4.4166 19 1 2.7899 -9.2527 4.3985 20 6 1.9209 -8.8951 1.4857 21 6 0.8446 -9.1747 0.6987 22 17 0.3755 -10.8222 0.4170 23 6 0.1152 -8.1233 0.1148 24 6 -0.9995 -8.3749 -0.7024 25 6 -1.6813 -7.3321 -1.2513 26 6 -1.2901 -6.0160 -1.0153 27 6 -0.2149 -5.7350 -0.2285 28 6 0.5126 -6.7845 0.3545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.8938 -0.5138 3.9322 39 1 1.8934 1.0275 3.0423 40 1 0.4400 -0.0001 3.0423 41 1 4.3770 -1.3930 0.6307 42 1 4.3778 0.1486 1.5205 43 1 4.3773 -1.3925 2.4108 44 1 1.6638 -2.7114 3.5651 45 1 3.1174 -3.2253 2.6756 46 1 0.3798 -4.5508 2.4344 47 1 1.7092 -5.1562 3.4513 48 1 3.2745 -6.5070 3.2989 49 1 4.8841 -7.5945 1.1412 50 1 2.4778 -9.7058 1.9319 51 1 -1.3139 -9.3901 -0.8943 52 1 -2.5382 -7.5281 -1.8790 53 1 -1.8479 -5.2067 -1.4630 54 1 0.0773 -4.7099 -0.0545 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8272892_10264010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:03:22 Heat of formation + Delta-G solvation = -121.600998 kcal Electronic energy + Delta-G solvation = -34085.887955 eV Core-core repulsion = 29751.395955 eV Total energy + Delta-G solvation = -4334.492001 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 396.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02895 -39.63617 -38.54713 -37.88216 -37.46368 -36.80054 -36.48129 -33.04767 -32.07687 -30.96703 -29.77281 -29.25579 -29.02928 -27.81563 -27.34861 -26.83800 -24.70940 -23.73401 -23.16991 -22.72187 -20.39123 -19.33778 -18.83204 -18.67679 -17.80832 -17.55413 -16.97361 -16.63514 -16.10343 -15.95283 -15.88975 -15.78542 -15.61452 -15.18666 -14.99214 -14.89860 -14.82231 -14.71372 -14.49252 -14.40345 -14.09081 -13.86558 -13.75961 -13.49724 -13.33953 -13.23980 -13.15053 -12.92607 -12.90913 -12.76032 -12.64562 -12.41912 -12.37710 -12.26318 -12.16160 -11.93721 -11.88233 -11.76140 -11.72753 -11.63855 -11.50773 -11.20856 -11.04757 -10.72192 -10.35705 -10.27741 -10.02299 -9.81988 -8.85857 -0.77769 -0.27252 0.76153 0.93149 1.11096 1.39760 1.49558 1.55500 1.63876 1.82885 1.87506 2.17106 2.46140 2.53208 2.90366 3.34433 3.45942 3.63809 3.81209 3.91996 4.01809 4.05717 4.09180 4.14452 4.15400 4.18976 4.30015 4.34168 4.35807 4.44659 4.49726 4.52698 4.67219 4.69576 4.76580 4.78367 4.81379 4.82183 4.82546 4.84634 4.86118 4.95475 5.00938 5.02579 5.08615 5.11639 5.12237 5.22814 5.31876 5.36584 5.43751 5.43972 5.46366 5.49841 5.54357 5.62497 5.67593 5.85119 6.44554 6.68552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.320 2.680 6 C -0.516 4.516 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.078 3.922 10 C 0.054 3.946 11 O -0.322 6.322 12 C 0.148 3.852 13 C -0.144 4.144 14 C -0.069 4.069 15 O -0.542 6.542 16 Si 0.966 3.034 17 H -0.247 1.247 18 H -0.263 1.263 19 H -0.250 1.250 20 C -0.104 4.104 21 C -0.035 4.035 22 Cl -0.055 7.055 23 C -0.045 4.045 24 C -0.123 4.123 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.100 4.100 28 C -0.078 4.078 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.123 0.877 49 H 0.386 0.614 50 H 0.147 0.853 51 H 0.141 0.859 52 H 0.151 0.849 53 H 0.149 0.851 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 1.213 2.483 3.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.449 2.551 6 C -0.618 4.618 7 C -0.622 4.622 8 O -0.593 6.593 9 C 0.003 3.997 10 C -0.020 4.020 11 O -0.239 6.239 12 C 0.103 3.897 13 C -0.146 4.146 14 C -0.179 4.179 15 O -0.349 6.349 16 Si 0.788 3.212 17 H -0.171 1.171 18 H -0.188 1.188 19 H -0.174 1.174 20 C -0.123 4.123 21 C -0.062 4.062 22 Cl -0.026 7.026 23 C -0.046 4.046 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.118 4.118 28 C -0.079 4.079 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.140 0.860 49 H 0.235 0.765 50 H 0.165 0.835 51 H 0.159 0.841 52 H 0.169 0.831 53 H 0.167 0.833 54 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.495 0.785 3.028 3.467 hybrid contribution 0.022 0.041 -0.692 0.693 sum -1.473 0.826 2.336 2.883 Atomic orbital electron populations 1.21527 0.94010 1.01865 1.01834 1.25917 1.00572 1.02853 1.13083 1.21603 1.01128 0.94836 1.02243 1.21518 1.00733 1.00004 0.96999 0.76131 0.61937 0.52802 0.64204 1.27067 1.07023 1.09767 1.17937 1.27173 1.26141 1.04611 1.04270 1.85370 1.79276 1.46464 1.48141 1.22318 0.99849 0.89465 0.88109 1.23233 0.98706 0.92357 0.87699 1.86099 1.66544 1.22647 1.48656 1.18272 0.91759 0.85013 0.94626 1.20261 1.00418 0.91852 1.02023 1.24955 0.84542 1.11819 0.96627 1.86538 1.47606 1.47370 1.53382 0.85477 0.80791 0.75624 0.79264 1.17057 1.18795 1.17407 1.20717 0.96329 0.96744 0.98496 1.20665 0.98043 0.85653 1.01821 1.98379 1.91805 1.17204 1.95221 1.17868 0.96834 0.91045 0.98833 1.21274 0.94520 1.01023 0.97234 1.21297 0.99862 0.92209 0.98399 1.21287 0.96593 0.97690 0.97570 1.21208 0.94971 0.99028 0.96566 1.18447 0.96238 0.93009 1.00169 0.91949 0.93472 0.92333 0.92124 0.93192 0.91640 0.92627 0.93391 0.92633 0.90689 0.90506 0.90832 0.91831 0.90628 0.91139 0.88054 0.91032 0.91367 0.89580 0.85959 0.76507 0.83527 0.84113 0.83096 0.83346 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 7.85 71.98 0.56 0.60 16 2 C -0.38 0.16 0.53 -10.79 -0.01 0.15 16 3 C -0.14 0.14 7.85 71.98 0.56 0.71 16 4 C -0.14 -0.22 7.85 71.98 0.56 0.35 16 5 Si 1.32 -3.42 8.45 68.60 0.58 -2.84 16 6 C -0.52 1.79 8.50 113.37 0.96 2.75 16 7 C -0.52 0.24 8.50 113.37 0.96 1.20 16 8 O -0.63 0.10 8.52 -144.34 -1.23 -1.13 16 9 C 0.08 -0.24 5.50 71.98 0.40 0.16 16 10 C 0.05 -0.08 6.18 71.98 0.44 0.37 16 11 O -0.32 -1.39 8.56 -87.12 -0.75 -2.14 16 12 C 0.15 0.71 5.67 22.56 0.13 0.84 16 13 C -0.14 -0.38 5.24 -20.00 -0.10 -0.49 16 14 C -0.07 0.01 2.32 71.24 0.17 0.18 16 15 O -0.54 -0.94 12.88 -148.98 -1.92 -2.86 16 16 Si 0.97 -1.25 25.46 68.60 1.75 0.50 16 17 H -0.25 0.38 6.71 99.48 0.67 1.04 16 18 H -0.26 -0.32 7.11 99.48 0.71 0.38 16 19 H -0.25 0.13 7.11 99.48 0.71 0.83 16 20 C -0.10 -0.28 8.33 22.05 0.18 -0.10 16 21 C -0.04 -0.16 6.32 22.39 0.14 -0.02 16 22 Cl -0.06 -0.18 27.50 -2.72 -0.07 -0.26 16 23 C -0.05 -0.24 5.74 -21.29 -0.12 -0.36 16 24 C -0.12 -0.34 9.44 22.33 0.21 -0.13 16 25 C -0.10 -0.02 9.95 22.04 0.22 0.20 16 26 C -0.11 -0.06 9.95 22.05 0.22 0.16 16 27 C -0.10 -0.35 9.56 22.31 0.21 -0.13 16 28 C -0.08 -0.43 5.75 -21.23 -0.12 -0.55 16 29 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 30 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.06 -0.01 7.97 -2.39 -0.02 -0.02 16 32 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 33 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 35 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 36 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.05 0.07 7.79 -2.39 -0.02 0.05 16 38 H 0.07 -0.37 7.48 -2.39 -0.02 -0.39 16 39 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 40 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 41 H 0.06 0.11 7.79 -2.39 -0.02 0.10 16 42 H 0.07 -0.09 7.79 -2.38 -0.02 -0.11 16 43 H 0.07 -0.09 7.48 -2.39 -0.02 -0.11 16 44 H 0.10 -0.88 7.21 -2.39 -0.02 -0.90 16 45 H 0.07 -0.26 7.21 -2.39 -0.02 -0.27 16 46 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.09 -0.49 7.05 -2.39 -0.02 -0.51 16 48 H 0.12 -0.31 6.43 -2.39 -0.02 -0.32 16 49 H 0.39 -1.59 8.70 -74.05 -0.64 -2.24 16 50 H 0.15 -0.01 4.79 -2.91 -0.01 -0.03 16 51 H 0.14 0.10 6.98 -2.91 -0.02 0.08 16 52 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 53 H 0.15 -0.60 8.06 -2.91 -0.02 -0.63 16 54 H 0.14 0.42 7.62 -2.91 -0.02 0.40 16 Total: 0.00 -12.13 441.20 4.91 -7.21 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: 0.97 Total: -4.37 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.59 Total: 5.88 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: -3.90 Total: -6.12 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.33 Total: -2.35 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.07 Total: -0.26 kcal Total: -12.13 4.91 -7.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8272892_10264010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.387 kcal (2) G-P(sol) polarization free energy of solvation -12.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds