Wall clock time and date at job start Tue Mar 9 2021 19:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35987 * 117.00361 * 2 1 4 4 C 1.38520 * 120.06883 * 0.29616 * 3 2 1 5 5 C 1.38359 * 119.98744 * 180.27536 * 4 3 2 6 6 Br 1.89106 * 119.93328 * 179.74692 * 5 4 3 7 7 C 1.38285 * 120.13092 * 359.72291 * 5 4 3 8 8 C 1.50699 * 119.93504 * 179.97438 * 7 5 4 9 9 O 1.42902 * 109.47291 * 284.65689 * 8 7 5 10 10 Si 1.86302 * 109.47373 * 164.65744 * 8 7 5 11 11 H 1.48500 * 109.47187 * 65.72382 * 10 8 7 12 12 H 1.48495 * 109.46975 * 185.72698 * 10 8 7 13 13 H 1.48503 * 109.46785 * 305.72312 * 10 8 7 14 14 C 1.38281 * 120.13383 * 359.97438 * 7 5 4 15 15 C 1.38516 * 120.01218 * 0.02562 * 14 7 5 16 16 O 1.36010 * 120.06723 * 180.02562 * 15 14 7 17 17 C 1.42903 * 116.99695 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.46912 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47321 * 65.00073 * 18 17 16 20 20 Si 1.63088 * 114.00327 * 179.97438 * 19 18 17 21 21 C 1.86300 * 109.47469 * 300.00051 * 20 19 18 22 22 C 1.86300 * 109.47260 * 60.00069 * 20 19 18 23 23 C 1.86304 * 109.47495 * 179.97438 * 20 19 18 24 24 C 1.52997 * 109.47018 * 60.00023 * 23 20 19 25 25 C 1.53000 * 109.47413 * 180.02562 * 23 20 19 26 26 C 1.53001 * 109.46870 * 299.99974 * 23 20 19 27 27 H 1.09004 * 109.47167 * 59.99866 * 1 2 3 28 28 H 1.09005 * 109.47559 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47106 * 300.00425 * 1 2 3 30 30 H 1.07998 * 120.00528 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47116 * 44.65629 * 8 7 5 32 32 H 0.96706 * 114.00007 * 300.00150 * 9 8 7 33 33 H 1.08007 * 119.99353 * 180.02562 * 14 7 5 34 34 H 1.08994 * 109.46867 * 59.99972 * 17 16 15 35 35 H 1.09007 * 109.47189 * 299.99689 * 17 16 15 36 36 H 1.08998 * 109.47270 * 184.99805 * 18 17 16 37 37 H 1.08997 * 109.47085 * 305.00012 * 18 17 16 38 38 H 1.09000 * 109.47081 * 59.99677 * 21 20 19 39 39 H 1.08996 * 109.47493 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47075 * 299.99926 * 21 20 19 41 41 H 1.09000 * 109.47388 * 59.99727 * 22 20 19 42 42 H 1.08996 * 109.47446 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.46795 * 300.00020 * 22 20 19 44 44 H 1.08996 * 109.47357 * 59.99699 * 24 23 20 45 45 H 1.09001 * 109.47531 * 180.02562 * 24 23 20 46 46 H 1.09007 * 109.46756 * 300.00363 * 24 23 20 47 47 H 1.09001 * 109.47132 * 60.00000 * 25 23 20 48 48 H 1.09001 * 109.46851 * 180.02562 * 25 23 20 49 49 H 1.09004 * 109.46737 * 299.99942 * 25 23 20 50 50 H 1.09009 * 109.47086 * 60.00304 * 26 23 20 51 51 H 1.09001 * 109.46919 * 179.97438 * 26 23 20 52 52 H 1.08991 * 109.47418 * 300.00001 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2934 2.3743 0.0062 5 6 1.9234 3.6061 0.0004 6 35 0.8939 5.1924 0.0017 7 6 3.3042 3.6796 -0.0057 8 6 3.9858 5.0237 -0.0126 9 8 3.8915 5.5990 -1.3173 10 14 5.7793 4.8130 0.4450 11 1 6.4716 4.0331 -0.6122 12 1 6.4174 6.1476 0.5737 13 1 5.8785 4.0901 1.7385 14 6 4.0610 2.5223 -0.0056 15 6 3.4364 1.2860 0.0001 16 8 4.1796 0.1470 0.0008 17 6 5.6005 0.2995 -0.0041 18 6 6.2615 -1.0803 -0.0019 19 8 5.9501 -1.7596 -1.2200 20 14 6.6036 -3.2495 -1.3345 21 6 8.4596 -3.1229 -1.2348 22 6 5.9778 -4.3112 0.0626 23 6 6.1194 -4.0168 -2.9616 24 6 6.6329 -3.1451 -4.1094 25 6 6.7320 -5.4147 -3.0687 26 6 4.5951 -4.1209 -3.0428 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2149 2.3192 0.0115 31 1 3.5012 5.6805 0.7099 32 1 4.3027 5.0670 -2.0124 33 1 5.1394 2.5824 -0.0100 34 1 5.9096 0.8515 0.8834 35 1 5.9041 0.8469 -0.8966 36 1 7.3420 -0.9654 0.0839 37 1 5.8896 -1.6600 0.8428 38 1 8.7426 -2.6742 -0.2826 39 1 8.8964 -4.1186 -1.3109 40 1 8.8258 -2.5017 -2.0523 41 1 4.8918 -4.3853 0.0044 42 1 6.4149 -5.3068 -0.0136 43 1 6.2607 -3.8625 1.0148 44 1 7.7188 -3.0708 -4.0515 45 1 6.3492 -3.5937 -5.0614 46 1 6.1960 -2.1493 -4.0328 47 1 6.3657 -6.0355 -2.2510 48 1 6.4490 -5.8634 -4.0210 49 1 7.8179 -5.3408 -3.0107 50 1 4.1582 -3.1251 -2.9663 51 1 4.3117 -4.5694 -3.9950 52 1 4.2292 -4.7419 -2.2251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8663_10264010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:10:22 Heat of formation + Delta-G solvation = -166.609710 kcal Electronic energy + Delta-G solvation = -31248.909198 eV Core-core repulsion = 26998.443493 eV Total energy + Delta-G solvation = -4250.465706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 420.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86423 -39.76488 -39.12563 -37.76342 -36.94088 -36.82218 -32.99113 -32.30119 -31.02319 -29.71592 -29.27850 -29.05365 -28.52863 -27.83433 -27.37679 -26.18721 -24.66167 -22.81295 -22.48836 -20.41505 -19.82577 -18.57990 -18.18103 -18.05839 -17.55687 -17.00899 -16.48303 -16.19952 -16.16424 -16.03300 -15.84233 -15.62846 -15.52942 -14.87832 -14.84678 -14.80635 -14.71358 -14.07895 -13.98177 -13.78544 -13.71068 -13.52386 -13.36270 -13.17414 -13.13129 -12.95610 -12.92508 -12.74879 -12.59650 -12.40580 -12.33032 -12.24445 -12.15253 -12.11989 -11.83192 -11.79312 -11.69460 -11.51575 -11.27933 -11.21274 -11.08483 -10.42210 -10.30595 -10.04789 -9.91750 -8.93704 -0.08702 -0.02125 0.59753 1.10737 1.41125 1.50371 1.53175 1.78976 1.89966 2.05647 2.15067 2.19181 2.29126 2.48495 3.36279 3.51270 3.65930 3.85760 3.93246 4.01244 4.08457 4.12456 4.13076 4.19393 4.26781 4.31359 4.34472 4.40547 4.46027 4.47404 4.60906 4.65954 4.73011 4.74847 4.75590 4.79085 4.80087 4.81228 4.82289 4.83602 4.99933 5.01735 5.09109 5.09330 5.19945 5.26348 5.33915 5.40791 5.43244 5.49395 5.60351 5.65932 5.96769 6.42713 6.71471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.097 3.903 4 C -0.146 4.146 5 C -0.078 4.078 6 Br -0.036 7.036 7 C -0.089 4.089 8 C -0.087 4.087 9 O -0.539 6.539 10 Si 0.968 3.032 11 H -0.233 1.233 12 H -0.267 1.267 13 H -0.248 1.248 14 C -0.176 4.176 15 C 0.116 3.884 16 O -0.305 6.305 17 C 0.036 3.964 18 C 0.075 3.925 19 O -0.638 6.638 20 Si 1.315 2.685 21 C -0.513 4.513 22 C -0.519 4.519 23 C -0.384 4.384 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.135 4.135 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.118 0.882 32 H 0.388 0.612 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.047 0.953 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -1.658 1.674 3.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.050 3.950 4 C -0.166 4.166 5 C -0.158 4.158 6 Br 0.049 6.951 7 C -0.092 4.092 8 C -0.197 4.197 9 O -0.345 6.345 10 Si 0.789 3.211 11 H -0.156 1.156 12 H -0.192 1.192 13 H -0.171 1.171 14 C -0.195 4.195 15 C 0.069 3.931 16 O -0.219 6.219 17 C -0.039 4.039 18 C 0.000 4.000 19 O -0.597 6.597 20 Si 1.445 2.555 21 C -0.616 4.616 22 C -0.620 4.620 23 C -0.426 4.426 24 C -0.193 4.193 25 C -0.197 4.197 26 C -0.193 4.193 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.136 0.864 32 H 0.236 0.764 33 H 0.176 0.824 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.025 -0.927 2.074 3.783 hybrid contribution -0.305 -0.988 -0.450 1.127 sum 2.720 -1.915 1.624 3.702 Atomic orbital electron populations 1.23400 0.76412 1.05770 1.02378 1.86195 1.23225 1.25319 1.88670 1.18356 0.89491 0.85499 1.01679 1.21160 1.01275 0.89478 1.04711 1.21408 0.93857 0.92084 1.08452 1.96749 1.69566 1.31209 1.97533 1.20042 0.92103 0.96263 1.00746 1.25177 1.12150 0.92328 0.90059 1.86562 1.82523 1.49395 1.16045 0.85461 0.73428 0.80677 0.81547 1.15557 1.19187 1.17105 1.21051 1.00974 0.89985 1.07466 1.18417 0.88596 0.86559 0.99494 1.86268 1.19840 1.27705 1.88039 1.23471 0.77503 0.99200 1.03679 1.22370 1.00030 0.91903 0.85718 1.85399 1.80914 1.51880 1.41537 0.76222 0.62228 0.53283 0.63795 1.27026 1.24298 1.05265 1.04993 1.27134 1.06577 1.12084 1.16248 1.25946 0.99041 1.01942 1.15690 1.21530 1.01142 0.99103 0.97507 1.21599 1.00975 0.95073 1.02066 1.21516 0.94709 1.01438 1.01590 0.91616 0.86444 0.91400 0.82317 0.86392 0.76368 0.82413 0.88335 0.89926 0.87321 0.90865 0.90475 0.90353 0.90823 0.91816 0.90418 0.90959 0.91719 0.93488 0.92748 0.91971 0.93233 0.91525 0.93043 0.93394 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.32 -2.03 10.28 -79.54 -0.82 -2.85 16 3 C 0.10 0.56 6.70 22.57 0.15 0.72 16 4 C -0.15 -0.50 8.77 22.37 0.20 -0.30 16 5 C -0.08 -0.31 6.22 22.31 0.14 -0.17 16 6 Br -0.04 -0.15 31.96 -20.37 -0.65 -0.80 16 7 C -0.09 -0.18 5.26 -19.84 -0.10 -0.29 16 8 C -0.09 0.00 2.02 71.24 0.14 0.14 16 9 O -0.54 -0.39 12.71 -148.98 -1.89 -2.28 16 10 Si 0.97 -2.57 25.31 68.60 1.74 -0.83 16 11 H -0.23 1.22 6.96 99.48 0.69 1.91 16 12 H -0.27 -0.21 7.11 99.48 0.71 0.50 16 13 H -0.25 0.62 7.11 99.48 0.71 1.33 16 14 C -0.18 -0.20 7.65 22.35 0.17 -0.03 16 15 C 0.12 0.59 6.70 22.57 0.15 0.74 16 16 O -0.30 -1.65 9.89 -73.62 -0.73 -2.38 16 17 C 0.04 -0.08 5.12 71.98 0.37 0.29 16 18 C 0.07 -0.26 5.51 71.98 0.40 0.13 16 19 O -0.64 -0.43 8.52 -144.34 -1.23 -1.66 16 20 Si 1.31 -3.28 8.45 68.60 0.58 -2.70 16 21 C -0.51 2.06 8.50 113.37 0.96 3.02 16 22 C -0.52 0.58 8.50 113.37 0.96 1.55 16 23 C -0.38 -0.07 0.53 -10.79 -0.01 -0.07 16 24 C -0.14 -0.10 7.85 71.98 0.56 0.46 16 25 C -0.14 0.14 7.85 71.98 0.56 0.71 16 26 C -0.14 -0.34 7.85 71.98 0.56 0.23 16 27 H 0.07 -0.23 7.68 -2.39 -0.02 -0.25 16 28 H 0.12 -0.57 8.14 -2.38 -0.02 -0.59 16 29 H 0.07 -0.27 7.65 -2.39 -0.02 -0.29 16 30 H 0.16 -0.02 6.30 -2.91 -0.02 -0.04 16 31 H 0.12 0.06 7.19 -2.39 -0.02 0.04 16 32 H 0.39 -2.29 8.70 -74.05 -0.64 -2.93 16 33 H 0.16 -0.56 3.28 -2.91 -0.01 -0.57 16 34 H 0.10 -0.72 7.66 -2.39 -0.02 -0.74 16 35 H 0.08 -0.32 7.66 -2.38 -0.02 -0.34 16 36 H 0.11 -1.08 7.21 -2.39 -0.02 -1.10 16 37 H 0.07 -0.34 7.21 -2.39 -0.02 -0.35 16 38 H 0.08 -0.46 7.48 -2.39 -0.02 -0.47 16 39 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 40 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 41 H 0.06 0.07 7.79 -2.39 -0.02 0.06 16 42 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 43 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 44 H 0.06 -0.10 7.80 -2.39 -0.02 -0.12 16 45 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.05 0.09 7.97 -2.38 -0.02 0.08 16 47 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 48 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.07 -0.21 7.80 -2.38 -0.02 -0.23 16 50 H 0.05 0.22 7.97 -2.38 -0.02 0.20 16 51 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 52 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 Total: 0.00 -14.46 429.47 4.35 -10.12 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.01 Total: -4.83 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.34 Total: 8.21 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -4.67 Total: -9.17 kcal Atomic # 14 Polarization: -5.84 SS G_CDS: 2.32 Total: -3.53 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.65 Total: -0.80 kcal Total: -14.46 4.35 -10.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_10264010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.493 kcal (2) G-P(sol) polarization free energy of solvation -14.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds