Wall clock time and date at job start Tue Mar 9 2021 19:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35994 * 117.00292 * 2 1 4 4 C 1.39143 * 120.06912 * 179.97438 * 3 2 1 5 5 O 1.36015 * 120.06602 * 359.97438 * 4 3 2 6 6 C 1.42896 * 117.00131 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47265 * 180.02562 * 6 5 4 8 8 H 1.08990 * 109.47146 * 180.02562 * 7 6 5 9 9 O 1.42967 * 109.46900 * 300.00277 * 7 6 5 10 10 C 1.43097 * 113.77089 * 178.78981 * 9 7 6 11 11 C 1.53256 * 108.94327 * 302.03213 * 10 9 7 12 12 H 1.09005 * 109.57645 * 294.71335 * 11 10 9 13 13 N 1.46498 * 109.57352 * 174.33093 * 11 10 9 14 14 C 1.34528 * 124.45995 * 299.69351 * 13 11 10 15 15 O 1.21442 * 125.70794 * 0.03706 * 14 13 11 16 16 C 1.47816 * 108.57782 * 179.90867 * 14 13 11 17 17 C 1.40946 * 105.88000 * 0.34911 * 16 14 13 18 18 C 1.38567 * 119.81866 * 179.79683 * 17 16 14 19 19 C 1.38615 * 119.72041 * 0.02562 * 18 17 16 20 20 C 1.38227 * 120.45638 * 0.02562 * 19 18 17 21 21 C 1.38562 * 134.29590 * 180.12501 * 16 14 13 22 22 C 1.34527 * 124.45830 * 119.99951 * 13 11 10 23 23 O 1.21444 * 125.71312 * 359.94090 * 22 13 11 24 24 C 1.53265 * 108.84694 * 54.51869 * 11 10 9 25 25 O 1.42974 * 109.46964 * 59.99672 * 7 6 5 26 26 C 1.38555 * 119.87624 * 179.97438 * 4 3 2 27 27 C 1.38240 * 120.00841 * 0.02562 * 26 4 3 28 28 C 1.50698 * 119.93532 * 179.97438 * 27 26 4 29 29 O 1.42904 * 109.47146 * 104.70021 * 28 27 26 30 30 Si 1.86303 * 109.47055 * 344.70366 * 28 27 26 31 31 C 1.38332 * 120.13422 * 0.25072 * 27 26 4 32 32 Br 1.89099 * 119.93992 * 179.70717 * 31 27 26 33 33 C 1.38320 * 120.12660 * 359.45253 * 31 27 26 34 34 H 1.09000 * 109.47341 * 300.00021 * 1 2 3 35 35 H 1.09002 * 109.47198 * 59.99997 * 1 2 3 36 36 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 37 37 H 1.08997 * 109.47382 * 300.00015 * 6 5 4 38 38 H 1.08997 * 109.47247 * 60.00672 * 6 5 4 39 39 H 1.09004 * 109.55422 * 61.86662 * 10 9 7 40 40 H 1.09000 * 109.55820 * 182.18758 * 10 9 7 41 41 H 1.08000 * 120.13757 * 179.97438 * 18 17 16 42 42 H 1.07997 * 119.76858 * 179.97438 * 19 18 17 43 43 H 1.08005 * 119.76886 * 180.02562 * 20 19 18 44 44 H 1.08001 * 120.14302 * 0.29382 * 21 16 14 45 45 H 1.09003 * 109.55292 * 65.31528 * 24 11 10 46 46 H 1.08998 * 109.55267 * 185.63765 * 24 11 10 47 47 H 1.08001 * 119.99763 * 179.97438 * 26 4 3 48 48 H 1.09000 * 109.47281 * 224.69926 * 28 27 26 49 49 H 0.96696 * 114.00377 * 300.00332 * 29 28 27 50 50 H 1.48498 * 109.99860 * 65.88222 * 30 28 27 51 51 H 1.48497 * 109.99948 * 187.20112 * 30 28 27 52 52 H 1.07998 * 120.00887 * 180.25054 * 33 31 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2861 0.0005 5 8 4.1793 0.1471 0.0016 6 6 5.6001 0.2997 0.0015 7 6 6.2613 -1.0801 0.0021 8 1 7.3449 -0.9637 0.0026 9 8 5.8593 -1.8005 1.1698 10 6 6.4058 -3.1206 1.2496 11 6 5.9873 -3.9085 0.0034 12 1 4.9058 -4.0445 0.0034 13 7 6.6489 -5.2156 0.0041 14 6 7.9823 -5.3939 -0.0079 15 8 8.8154 -4.5104 -0.0201 16 6 8.2635 -6.8450 -0.0006 17 6 7.0059 -7.4815 0.0081 18 6 6.9340 -8.8653 0.0121 19 6 8.1005 -9.6141 0.0082 20 6 9.3338 -8.9898 0.0008 21 6 9.4211 -7.6064 -0.0046 22 6 6.0030 -6.3956 0.0108 23 8 4.7977 -6.5440 0.0182 24 6 6.4059 -3.1217 -1.2435 25 8 5.8593 -1.8016 -1.1649 26 6 4.0608 2.5227 0.0000 27 6 3.3042 3.6797 -0.0005 28 6 3.9856 5.0238 -0.0005 29 8 3.8966 5.6030 -1.3039 30 14 5.7774 4.8117 0.4636 31 6 1.9229 3.6062 0.0047 32 35 0.8933 5.1923 0.0123 33 6 1.2932 2.3746 -0.0009 34 1 -0.3634 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 -0.3634 -1.0277 -0.0005 37 1 5.9065 0.8486 -0.8889 38 1 5.9064 0.8501 0.8911 39 1 7.4933 -3.0631 1.2968 40 1 6.0262 -3.6194 2.1413 41 1 5.9732 -9.3583 0.0192 42 1 8.0454 -10.6926 0.0118 43 1 10.2356 -9.5840 -0.0026 44 1 10.3874 -7.1241 -0.0104 45 1 7.4933 -3.0642 -1.2906 46 1 6.0262 -3.6214 -2.1346 47 1 5.1391 2.5828 0.0008 48 1 3.4981 5.6784 0.7220 49 1 4.3105 5.0733 -1.9989 50 1 6.4864 4.0393 -0.5880 51 1 6.4179 6.1402 0.6369 52 1 0.2146 2.3195 -0.0009 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8663_13594088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:13:17 Heat of formation + Delta-G solvation = -141.352913 kcal Electronic energy + Delta-G solvation = -44267.395527 eV Core-core repulsion = 38406.487768 eV Total energy + Delta-G solvation = -5860.907759 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 506.059 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.70908 -41.95279 -41.21623 -39.96243 -39.67701 -39.40632 -39.07393 -37.25016 -37.10554 -37.06339 -34.57277 -33.01521 -32.35431 -32.16508 -31.61896 -30.29032 -29.45032 -28.55397 -27.48514 -26.35398 -26.24426 -25.47151 -24.52979 -23.48906 -23.08562 -22.57627 -22.26815 -21.01279 -19.87658 -19.12589 -18.98709 -18.89175 -18.54818 -18.21491 -17.86504 -17.66439 -17.54102 -17.13367 -17.08246 -16.71265 -16.45386 -16.23903 -16.15127 -16.13268 -16.07010 -15.91691 -15.86622 -15.49044 -15.33022 -15.26098 -15.06805 -14.76251 -14.68272 -14.48168 -14.34424 -13.96107 -13.80523 -13.71959 -13.51843 -13.28514 -13.04809 -12.77615 -12.71462 -12.68040 -12.41786 -12.33425 -12.25195 -12.23366 -12.12272 -11.90469 -11.70354 -11.63029 -11.29933 -11.13644 -10.94359 -10.85159 -10.62408 -10.26088 -10.24726 -9.94734 -8.96831 -4.95650 -1.11656 -0.10262 -0.06261 -0.03823 0.56829 0.87565 0.88422 1.22891 1.52102 1.61516 1.91402 1.92425 2.18166 2.21129 2.27362 2.30840 2.44528 2.57035 3.06960 3.15941 3.23417 3.32346 3.41014 3.51290 3.54352 3.58018 3.69593 3.77149 3.89320 3.93614 3.96191 4.04054 4.05428 4.13997 4.14611 4.16856 4.19740 4.21298 4.27665 4.30119 4.32286 4.41715 4.42951 4.44992 4.54534 4.61375 4.68781 4.72260 4.80315 4.87727 4.99551 5.18062 5.23388 5.25107 5.34568 5.44446 5.65209 5.75544 5.91138 5.91880 6.34228 6.38712 6.49275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.099 3.901 4 C 0.115 3.885 5 O -0.300 6.300 6 C 0.059 3.941 7 C 0.237 3.763 8 H 0.111 0.889 9 O -0.383 6.383 10 C 0.053 3.947 11 C 0.076 3.924 12 H 0.113 0.887 13 N -0.569 5.569 14 C 0.577 3.423 15 O -0.479 6.479 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.045 4.045 19 C -0.084 4.084 20 C -0.084 4.084 21 C -0.042 4.042 22 C 0.575 3.425 23 O -0.490 6.490 24 C 0.052 3.948 25 O -0.386 6.386 26 C -0.162 4.162 27 C -0.083 4.083 28 C -0.089 4.089 29 O -0.534 6.534 30 Si 0.758 3.242 31 C -0.078 4.078 32 Br -0.039 7.039 33 C -0.145 4.145 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.167 0.833 48 H 0.119 0.881 49 H 0.385 0.615 50 H -0.258 1.258 51 H -0.295 1.295 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -8.283 1.695 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.052 3.948 4 C 0.069 3.931 5 O -0.213 6.213 6 C -0.016 4.016 7 C 0.142 3.858 8 H 0.128 0.872 9 O -0.302 6.302 10 C -0.024 4.024 11 C -0.027 4.027 12 H 0.131 0.869 13 N -0.314 5.314 14 C 0.368 3.632 15 O -0.352 6.352 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.064 4.064 19 C -0.102 4.102 20 C -0.101 4.101 21 C -0.060 4.060 22 C 0.366 3.634 23 O -0.363 6.363 24 C -0.025 4.025 25 O -0.306 6.306 26 C -0.181 4.181 27 C -0.086 4.086 28 C -0.197 4.197 29 O -0.341 6.341 30 Si 0.661 3.339 31 C -0.158 4.158 32 Br 0.047 6.953 33 C -0.166 4.166 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.170 0.830 42 H 0.193 0.807 43 H 0.194 0.806 44 H 0.175 0.825 45 H 0.096 0.904 46 H 0.128 0.872 47 H 0.183 0.817 48 H 0.136 0.864 49 H 0.234 0.766 50 H -0.183 1.183 51 H -0.223 1.223 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.123 -6.789 1.799 9.317 hybrid contribution -0.530 0.034 -1.211 1.322 sum 5.593 -6.755 0.588 8.789 Atomic orbital electron populations 1.23388 0.76431 1.05667 1.02414 1.86219 1.23242 1.25474 1.88621 1.18366 0.89539 0.85427 1.01460 1.18403 0.88475 0.86376 0.99885 1.86332 1.18865 1.27860 1.88246 1.23335 0.78256 0.94450 1.05553 1.23974 0.97918 0.88302 0.75580 0.87162 1.88243 1.73521 1.26042 1.42398 1.22998 0.99661 0.82622 0.97160 1.22571 0.99889 0.81110 0.99084 0.86920 1.46472 1.08769 1.07930 1.68191 1.18711 0.80970 0.89893 0.73603 1.90786 1.49864 1.49624 1.44885 1.20453 0.95883 0.91878 1.08006 1.20429 0.92596 0.95159 1.08133 1.21159 1.01514 0.89883 0.93827 1.21954 0.90802 1.02550 0.94854 1.21972 1.00102 0.93299 0.94773 1.21169 0.97208 0.94066 0.93585 1.18817 0.87497 0.83583 0.73507 1.90826 1.14935 1.85407 1.45125 1.22996 0.99656 0.82650 0.97215 1.88240 1.73567 1.26088 1.42699 1.21002 1.01002 0.89434 1.06657 1.19935 0.91840 0.96060 1.00772 1.25352 1.13106 0.92458 0.88807 1.86648 1.80759 1.50081 1.16650 0.94240 0.71134 0.80751 0.87794 1.21427 0.93952 0.91938 1.08470 1.96749 1.69717 1.31349 1.97534 1.21134 1.01242 0.89424 1.04776 0.91278 0.91573 0.86690 0.87538 0.86181 0.90380 0.87004 0.83003 0.80692 0.80571 0.82515 0.90379 0.87248 0.81654 0.86362 0.76564 1.18324 1.22254 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -2.69 10.28 -79.61 -0.82 -3.51 16 3 C 0.10 0.68 6.70 22.56 0.15 0.84 16 4 C 0.12 0.64 6.70 22.56 0.15 0.79 16 5 O -0.30 -2.19 9.71 -67.04 -0.65 -2.84 16 6 C 0.06 -0.03 4.83 71.98 0.35 0.32 16 7 C 0.24 0.49 3.59 71.98 0.26 0.75 16 8 H 0.11 -0.37 8.14 -2.39 -0.02 -0.38 16 9 O -0.38 -2.09 10.43 -121.89 -1.27 -3.36 16 10 C 0.05 0.17 6.33 72.07 0.46 0.63 16 11 C 0.08 0.35 3.07 45.17 0.14 0.48 16 12 H 0.11 0.89 7.60 -2.38 -0.02 0.87 16 13 N -0.57 -2.29 2.53 -739.55 -1.87 -4.16 16 14 C 0.58 1.85 7.35 86.82 0.64 2.49 16 15 O -0.48 -2.85 15.16 -3.53 -0.05 -2.91 16 16 C -0.16 0.07 6.40 -20.00 -0.13 -0.05 16 17 C -0.16 -0.08 6.40 -20.00 -0.13 -0.21 16 18 C -0.05 0.22 10.09 22.44 0.23 0.45 16 19 C -0.08 0.85 10.04 22.36 0.22 1.08 16 20 C -0.08 0.89 10.03 22.36 0.22 1.12 16 21 C -0.04 0.26 10.09 22.44 0.23 0.48 16 22 C 0.57 3.27 8.02 86.82 0.70 3.97 16 23 O -0.49 -5.70 17.44 -3.54 -0.06 -5.76 16 24 C 0.05 0.19 6.32 72.07 0.46 0.65 16 25 O -0.39 -2.36 10.43 -121.89 -1.27 -3.64 16 26 C -0.16 -0.09 7.65 22.35 0.17 0.08 16 27 C -0.08 -0.17 5.26 -19.84 -0.10 -0.28 16 28 C -0.09 -0.08 2.02 71.24 0.14 0.07 16 29 O -0.53 -1.66 12.73 -148.98 -1.90 -3.56 16 30 Si 0.76 -2.06 30.01 68.60 2.06 0.00 16 31 C -0.08 -0.35 6.22 22.31 0.14 -0.21 16 32 Br -0.04 -0.20 31.97 -20.37 -0.65 -0.85 16 33 C -0.15 -0.61 8.77 22.37 0.20 -0.42 16 34 H 0.07 -0.17 7.66 -2.39 -0.02 -0.19 16 35 H 0.07 -0.13 7.66 -2.39 -0.02 -0.15 16 36 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.11 -0.48 7.66 -2.39 -0.02 -0.50 16 38 H 0.12 -0.76 7.66 -2.39 -0.02 -0.78 16 39 H 0.08 0.18 6.72 -2.38 -0.02 0.16 16 40 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.15 -1.05 8.06 -2.91 -0.02 -1.07 16 42 H 0.18 -2.83 8.06 -2.91 -0.02 -2.85 16 43 H 0.18 -2.96 8.06 -2.91 -0.02 -2.99 16 44 H 0.16 -1.42 8.06 -2.91 -0.02 -1.45 16 45 H 0.08 0.22 6.63 -2.39 -0.02 0.21 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.17 -0.81 3.29 -2.91 -0.01 -0.82 16 48 H 0.12 0.19 7.18 -2.39 -0.02 0.17 16 49 H 0.39 -1.13 8.70 -74.06 -0.64 -1.77 16 50 H -0.26 0.59 6.98 99.48 0.69 1.28 16 51 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 52 H 0.16 0.14 6.30 -2.91 -0.02 0.12 16 Total: 0.00 -26.66 452.35 -0.47 -27.14 By element: Atomic # 1 Polarization: -11.09 SS G_CDS: 0.42 Total: -10.68 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 5.60 Total: 14.13 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: -1.87 Total: -4.16 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -6.02 Total: -25.57 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.06 Total: 0.00 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.65 Total: -0.85 kcal Total: -26.66 -0.47 -27.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_13594088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.214 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds