Wall clock time and date at job start Tue Mar 9 2021 19:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00214 * 2 1 4 4 C 1.39155 * 120.06541 * 180.30297 * 3 2 1 5 5 O 1.36007 * 120.06805 * 359.97438 * 4 3 2 6 6 C 1.42893 * 117.00038 * 180.27349 * 5 4 3 7 7 C 1.53003 * 109.46942 * 179.97438 * 6 5 4 8 8 H 1.09000 * 112.84873 * 316.19561 * 7 6 5 9 9 C 1.53775 * 113.61568 * 87.50320 * 7 6 5 10 10 C 1.53777 * 87.08196 * 139.97810 * 9 7 6 11 11 H 1.09002 * 113.68744 * 89.13282 * 10 9 7 12 12 O 1.42905 * 113.61844 * 220.01906 * 10 9 7 13 13 C 1.42903 * 114.00167 * 247.50424 * 12 10 9 14 14 C 1.52999 * 109.47111 * 59.99266 * 13 12 10 15 15 C 1.52999 * 109.46971 * 179.97438 * 13 12 10 16 16 C 1.53002 * 109.46770 * 299.99670 * 13 12 10 17 17 C 1.53780 * 87.08369 * 334.56925 * 10 9 7 18 18 C 1.38560 * 119.86869 * 180.25025 * 4 3 2 19 19 C 1.38238 * 120.01046 * 359.44771 * 18 4 3 20 20 C 1.50699 * 119.93328 * 180.29753 * 19 18 4 21 21 O 1.42903 * 109.47038 * 255.00099 * 20 19 18 22 22 Si 1.86303 * 109.47261 * 135.00239 * 20 19 18 23 23 C 1.38340 * 120.13798 * 0.27992 * 19 18 4 24 24 Br 1.89097 * 119.93975 * 180.02562 * 23 19 18 25 25 C 1.38315 * 120.12315 * 359.97438 * 23 19 18 26 26 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46966 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47585 * 59.99267 * 1 2 3 29 29 H 1.09002 * 109.47252 * 299.99707 * 6 5 4 30 30 H 1.09006 * 109.47230 * 60.00094 * 6 5 4 31 31 H 1.08998 * 113.61960 * 254.53171 * 9 7 6 32 32 H 1.09007 * 113.61161 * 25.43303 * 9 7 6 33 33 H 1.08996 * 109.46654 * 60.00622 * 14 13 12 34 34 H 1.09007 * 109.46866 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.47683 * 299.99967 * 14 13 12 36 36 H 1.08996 * 109.47306 * 59.99970 * 15 13 12 37 37 H 1.09004 * 109.46501 * 180.02562 * 15 13 12 38 38 H 1.08994 * 109.46913 * 299.99105 * 15 13 12 39 39 H 1.09003 * 109.47391 * 59.99700 * 16 13 12 40 40 H 1.08998 * 109.46992 * 180.02562 * 16 13 12 41 41 H 1.09000 * 109.47036 * 300.00239 * 16 13 12 42 42 H 1.08996 * 113.61316 * 270.88201 * 17 10 9 43 43 H 1.08999 * 113.61678 * 139.98181 * 17 10 9 44 44 H 1.08002 * 119.99717 * 179.73012 * 18 4 3 45 45 H 1.08995 * 109.47189 * 15.00591 * 20 19 18 46 46 H 0.96702 * 114.00361 * 300.00103 * 21 20 19 47 47 H 1.48498 * 110.00021 * 179.97438 * 22 20 19 48 48 H 1.48499 * 110.00239 * 301.32235 * 22 20 19 49 49 H 1.07996 * 120.00393 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2861 -0.0064 5 8 4.1793 0.1471 -0.0121 6 6 5.6001 0.2997 -0.0124 7 6 6.2612 -1.0801 -0.0185 8 1 5.7907 -1.7779 0.6743 9 6 6.4711 -1.6564 -1.4286 10 6 7.8346 -2.1654 -0.9323 11 1 7.7959 -3.1611 -0.4904 12 8 8.8826 -2.0254 -1.8937 13 6 9.3805 -3.2673 -2.3957 14 6 8.2445 -4.0352 -3.0745 15 6 10.4919 -2.9976 -3.4121 16 6 9.9378 -4.0985 -1.2384 17 6 7.7933 -1.0296 0.1036 18 6 4.0609 2.5227 -0.0011 19 6 3.3043 3.6797 -0.0011 20 6 3.9857 5.0238 -0.0021 21 8 3.8910 5.6069 1.2991 22 14 3.1579 6.1389 -1.2440 23 6 1.9228 3.6062 -0.0005 24 35 0.8934 5.1924 -0.0012 25 6 1.2932 2.3747 -0.0004 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 5.9059 0.8534 -0.9001 30 1 5.9071 0.8454 0.8800 31 1 5.7733 -2.4542 -1.6827 32 1 6.5456 -0.8947 -2.2049 33 1 7.8476 -3.4431 -3.8990 34 1 8.6243 -4.9827 -3.4570 35 1 7.4525 -4.2274 -2.3507 36 1 11.3012 -2.4504 -2.9289 37 1 10.8713 -3.9449 -3.7953 38 1 10.0944 -2.4057 -4.2365 39 1 9.1457 -4.2905 -0.5145 40 1 10.3180 -5.0455 -1.6213 41 1 10.7470 -3.5514 -0.7548 42 1 8.2293 -0.0967 -0.2537 43 1 8.1629 -1.3215 1.0866 44 1 5.1392 2.5829 -0.0016 45 1 5.0351 4.8989 -0.2688 46 1 2.9835 5.7473 1.6021 47 1 3.8203 7.4679 -1.2542 48 1 3.2215 5.5286 -2.5963 49 1 0.2146 2.3196 -0.0003 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8663_14598384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:15:48 Heat of formation + Delta-G solvation = -100.300365 kcal Electronic energy + Delta-G solvation = -30045.351495 eV Core-core repulsion = 25794.204141 eV Total energy + Delta-G solvation = -4251.147354 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.097 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97652 -40.96748 -39.67915 -39.29783 -38.16279 -37.08901 -33.97477 -33.51851 -32.28059 -30.75263 -29.30236 -28.54710 -28.37422 -28.26522 -26.65056 -26.28107 -24.45598 -22.92031 -22.69473 -20.86518 -20.67183 -19.63969 -18.64891 -18.35932 -17.76595 -17.65218 -17.32159 -16.65227 -16.46672 -16.35722 -16.04577 -15.90064 -15.78898 -15.58564 -15.13222 -14.83665 -14.55463 -14.46140 -14.22212 -14.09543 -13.86786 -13.47983 -13.37280 -13.34506 -13.25855 -12.97812 -12.91875 -12.79864 -12.67427 -12.52246 -12.45402 -12.29451 -12.22363 -12.16764 -12.10487 -11.93655 -11.71961 -11.61672 -11.36194 -11.20113 -10.60025 -10.38559 -9.97152 -9.04453 -4.77842 -0.21757 -0.08591 0.07370 1.08934 1.45677 1.87291 1.93565 2.16868 2.23282 2.72077 3.25795 3.42052 3.46731 3.47207 3.54148 3.72817 3.74741 3.82444 3.86784 3.90552 3.96048 4.05694 4.09367 4.18803 4.22958 4.28937 4.34093 4.38539 4.39609 4.49020 4.54453 4.60193 4.60664 4.65889 4.74784 4.75590 4.76390 4.78001 4.82711 4.89402 4.91806 4.95791 4.99158 5.10127 5.13882 5.22327 5.29088 5.30959 5.36480 5.91094 6.36368 6.39714 6.45359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.097 3.903 4 C 0.115 3.885 5 O -0.310 6.310 6 C 0.064 3.936 7 C -0.102 4.102 8 H 0.108 0.892 9 C -0.148 4.148 10 C 0.060 3.940 11 H 0.101 0.899 12 O -0.381 6.381 13 C 0.098 3.902 14 C -0.174 4.174 15 C -0.140 4.140 16 C -0.177 4.177 17 C -0.122 4.122 18 C -0.156 4.156 19 C -0.083 4.083 20 C -0.053 4.053 21 O -0.541 6.541 22 Si 0.574 3.426 23 C -0.103 4.103 24 Br 0.095 6.905 25 C -0.129 4.129 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.115 0.885 46 H 0.384 0.616 47 H -0.267 1.267 48 H -0.277 1.277 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 -3.891 1.674 5.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.050 3.950 4 C 0.068 3.932 5 O -0.223 6.223 6 C -0.011 4.011 7 C -0.120 4.120 8 H 0.126 0.874 9 C -0.186 4.186 10 C 0.003 3.997 11 H 0.119 0.881 12 O -0.301 6.301 13 C 0.059 3.941 14 C -0.231 4.231 15 C -0.197 4.197 16 C -0.234 4.234 17 C -0.159 4.159 18 C -0.176 4.176 19 C -0.086 4.086 20 C -0.164 4.164 21 O -0.349 6.349 22 Si 0.477 3.523 23 C -0.183 4.183 24 Br 0.180 6.820 25 C -0.149 4.149 26 H 0.134 0.866 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.175 0.825 45 H 0.133 0.867 46 H 0.234 0.766 47 H -0.192 1.192 48 H -0.203 1.203 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.171 -3.075 0.830 4.494 hybrid contribution 0.714 -0.540 -0.110 0.902 sum -2.457 -3.615 0.720 4.430 Atomic orbital electron populations 1.23471 0.76005 1.05981 1.02811 1.86207 1.23603 1.25023 1.88607 1.18315 0.89166 0.85848 1.01660 1.18563 0.88901 0.86428 0.99310 1.86187 1.19951 1.28107 1.88079 1.23057 0.76794 0.98773 1.02434 1.22257 0.95398 0.95607 0.98756 0.87408 1.23586 0.97186 1.01218 0.96622 1.23665 0.86676 0.99326 0.90078 0.88126 1.88012 1.53124 1.30191 1.58802 1.21679 0.94042 0.84329 0.94024 1.22445 0.98472 1.01014 1.01193 1.21795 0.97050 1.02944 0.97889 1.22447 1.01705 1.00842 0.98395 1.23206 0.93398 0.99682 0.99655 1.21041 1.01387 0.89390 1.05766 1.19891 0.92026 0.96465 1.00186 1.24744 1.05080 0.93362 0.93230 1.86505 1.33684 1.83048 1.31642 0.93056 1.00923 0.79428 0.78935 1.21241 0.92954 0.92022 1.12043 1.96274 1.63627 1.27994 1.94107 1.21134 1.01833 0.88555 1.03343 0.86550 0.90902 0.91093 0.91191 0.90351 0.91061 0.90163 0.92567 0.90536 0.92112 0.92230 0.89722 0.92510 0.91796 0.90409 0.92108 0.89138 0.89238 0.82525 0.86699 0.76627 1.19172 1.20253 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.32 -1.17 10.28 -79.61 -0.82 -1.99 16 3 C 0.10 0.35 6.70 22.57 0.15 0.50 16 4 C 0.11 0.57 6.70 22.57 0.15 0.72 16 5 O -0.31 -1.72 9.92 -79.75 -0.79 -2.51 16 6 C 0.06 0.02 4.58 71.98 0.33 0.35 16 7 C -0.10 0.09 4.01 -10.27 -0.04 0.05 16 8 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 9 C -0.15 -0.13 7.46 31.12 0.23 0.10 16 10 C 0.06 0.02 2.82 31.12 0.09 0.11 16 11 H 0.10 -0.17 5.54 -2.39 -0.01 -0.18 16 12 O -0.38 -1.61 10.00 -148.98 -1.49 -3.10 16 13 C 0.10 0.09 1.11 -10.79 -0.01 0.07 16 14 C -0.17 0.09 8.38 71.98 0.60 0.69 16 15 C -0.14 -0.03 8.84 71.98 0.64 0.61 16 16 C -0.18 0.26 8.38 71.98 0.60 0.86 16 17 C -0.12 0.19 7.47 31.12 0.23 0.42 16 18 C -0.16 -0.49 8.65 22.35 0.19 -0.29 16 19 C -0.08 -0.25 4.78 -19.84 -0.09 -0.35 16 20 C -0.05 -0.21 2.79 71.24 0.20 -0.01 16 21 O -0.54 -2.46 12.88 -148.98 -1.92 -4.38 16 22 Si 0.57 3.33 26.93 68.60 1.85 5.18 16 23 C -0.10 -0.04 5.78 22.31 0.13 0.09 16 24 Br 0.10 -0.33 26.04 -20.37 -0.53 -0.86 16 25 C -0.13 0.09 8.77 22.37 0.20 0.29 16 26 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 27 H 0.07 -0.59 7.66 -2.39 -0.02 -0.61 16 28 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 29 H 0.07 -0.03 7.37 -2.39 -0.02 -0.05 16 30 H 0.08 -0.15 7.66 -2.38 -0.02 -0.17 16 31 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.08 0.24 7.90 -2.38 -0.02 0.22 16 33 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.06 -0.05 7.02 -2.39 -0.02 -0.07 16 36 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.06 -0.15 6.24 -2.39 -0.01 -0.17 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.09 -0.06 8.10 -2.39 -0.02 -0.08 16 43 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.16 -0.02 6.24 -2.91 -0.02 -0.04 16 45 H 0.12 0.40 7.77 -2.39 -0.02 0.38 16 46 H 0.38 -0.48 7.30 -74.06 -0.54 -1.02 16 47 H -0.27 -3.20 7.11 99.48 0.71 -2.49 16 48 H -0.28 -3.20 7.11 99.48 0.71 -2.49 16 49 H 0.18 -1.16 6.30 -2.91 -0.02 -1.18 16 Total: 0.00 -14.37 399.64 1.46 -12.91 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: 0.45 Total: -10.51 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.71 Total: 5.26 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -5.02 Total: -11.98 kcal Atomic # 14 Polarization: 3.33 SS G_CDS: 1.85 Total: 5.18 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -0.53 Total: -0.86 kcal Total: -14.37 1.46 -12.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_14598384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.389 kcal (2) G-P(sol) polarization free energy of solvation -14.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds