Wall clock time and date at job start Tue Mar 9 2021 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35989 * 117.00208 * 2 1 4 4 C 1.39152 * 120.06770 * 179.97438 * 3 2 1 5 5 O 1.36008 * 120.06297 * 0.02562 * 4 3 2 6 6 C 1.42903 * 117.00281 * 179.72362 * 5 4 3 7 7 C 1.52997 * 109.47034 * 179.97438 * 6 5 4 8 8 H 1.08996 * 112.85489 * 43.79882 * 7 6 5 9 9 C 1.53781 * 113.61150 * 174.99899 * 7 6 5 10 10 C 1.53785 * 87.08139 * 89.11483 * 9 7 6 11 11 O 1.42895 * 113.61389 * 270.88133 * 10 9 7 12 12 C 1.42900 * 114.00230 * 294.70273 * 11 10 9 13 13 C 1.52997 * 113.61319 * 139.98359 * 10 9 7 14 14 F 1.39894 * 109.47714 * 54.77877 * 13 10 9 15 15 F 1.39903 * 109.47069 * 174.78014 * 13 10 9 16 16 F 1.39899 * 109.47071 * 294.77622 * 13 10 9 17 17 C 1.53779 * 87.08106 * 25.43382 * 10 9 7 18 18 C 1.38555 * 119.87625 * 179.74540 * 4 3 2 19 19 C 1.38248 * 120.00578 * 0.27466 * 18 4 3 20 20 C 1.50699 * 119.92738 * 179.97438 * 19 18 4 21 21 O 1.42897 * 109.47567 * 15.00748 * 20 19 18 22 22 Si 1.86311 * 109.46558 * 135.00334 * 20 19 18 23 23 C 1.38327 * 120.13646 * 359.97438 * 19 18 4 24 24 Br 1.89106 * 119.93454 * 179.97438 * 23 19 18 25 25 C 1.38318 * 120.13073 * 359.97438 * 23 19 18 26 26 H 1.09007 * 109.46878 * 60.00199 * 1 2 3 27 27 H 1.08993 * 109.47599 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47137 * 300.00393 * 1 2 3 29 29 H 1.09000 * 109.46489 * 299.99573 * 6 5 4 30 30 H 1.09000 * 109.46696 * 59.99531 * 6 5 4 31 31 H 1.08997 * 113.61637 * 203.65949 * 9 7 6 32 32 H 1.09000 * 113.61756 * 334.48617 * 9 7 6 33 33 H 1.08996 * 109.46943 * 297.19578 * 12 11 10 34 34 H 1.08997 * 109.47361 * 57.19885 * 12 11 10 35 35 H 1.09003 * 109.46939 * 177.19207 * 12 11 10 36 36 H 1.09001 * 113.61312 * 220.02370 * 17 10 9 37 37 H 1.08994 * 113.61624 * 89.11746 * 17 10 9 38 38 H 1.07997 * 120.00184 * 180.25272 * 18 4 3 39 39 H 1.09000 * 109.47351 * 255.00241 * 20 19 18 40 40 H 0.96699 * 114.00090 * 59.98867 * 21 20 19 41 41 H 1.48505 * 109.99727 * 179.97438 * 22 20 19 42 42 H 1.48494 * 110.00076 * 301.31696 * 22 20 19 43 43 H 1.07994 * 120.00836 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2861 0.0005 5 8 4.1793 0.1471 0.0005 6 6 5.6001 0.2996 -0.0050 7 6 6.2611 -1.0803 -0.0035 8 1 5.7877 -1.7772 -0.6950 9 6 7.7927 -1.0297 -0.1320 10 6 7.8401 -0.9464 1.4028 11 8 7.7887 0.3903 1.9054 12 6 8.9246 1.1854 1.5596 13 6 8.9651 -1.7744 2.0271 14 9 10.1881 -1.4036 1.4580 15 9 9.0036 -1.5439 3.4064 16 9 8.7322 -3.1329 1.7877 17 6 6.4771 -1.6583 1.4051 18 6 4.0609 2.5227 -0.0048 19 6 3.3042 3.6797 -0.0049 20 6 3.9858 5.0237 -0.0101 21 8 5.3607 4.8593 -0.3631 22 14 3.1547 6.1365 -1.2520 23 6 1.9229 3.6062 -0.0002 24 35 0.8935 5.1925 0.0003 25 6 1.2932 2.3747 0.0040 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 5.9032 0.8470 -0.8975 30 1 5.9097 0.8514 0.8825 31 1 8.2277 -1.9450 -0.5332 32 1 8.1597 -0.1327 -0.6308 33 1 9.8204 0.7520 2.0043 34 1 9.0333 1.2116 0.4754 35 1 8.7863 2.1992 1.9354 36 1 5.7819 -1.2681 2.1485 37 1 6.5523 -2.7455 1.4241 38 1 5.1392 2.5828 -0.0085 39 1 3.9162 5.4703 0.9817 40 1 5.4984 4.4661 -1.2357 41 1 3.8172 7.4655 -1.2664 42 1 3.2148 5.5238 -2.6033 43 1 0.2146 2.3196 0.0073 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8663_17321600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:25:01 Heat of formation + Delta-G solvation = -233.755706 kcal Electronic energy + Delta-G solvation = -34828.920005 eV Core-core repulsion = 29474.698904 eV Total energy + Delta-G solvation = -5354.221101 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.037 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.27055 -48.80342 -48.74232 -42.02653 -41.34363 -39.52085 -39.15220 -37.32905 -37.00126 -33.49998 -32.04346 -31.00892 -29.97882 -28.65627 -28.20099 -27.41099 -26.76941 -26.14066 -23.87524 -22.96213 -22.58936 -20.62829 -19.95300 -19.60864 -19.52679 -19.26268 -18.58927 -18.15930 -17.64098 -17.35225 -17.13333 -16.51154 -16.40972 -16.31871 -16.03000 -15.90382 -15.70038 -15.66854 -15.58833 -15.53890 -15.19061 -14.98197 -14.91347 -14.75653 -14.61942 -14.29682 -14.14317 -14.02552 -13.70541 -13.43575 -13.20731 -12.99504 -12.88654 -12.69236 -12.49363 -12.43894 -12.28192 -12.18628 -12.17420 -11.93679 -11.88177 -11.61592 -11.46778 -10.82406 -10.67258 -9.85367 -8.94161 -4.66114 -0.14858 -0.02176 0.19450 1.16465 1.46454 1.51945 1.89234 1.92810 2.08176 2.21899 2.33728 2.55238 2.61551 2.88287 3.16981 3.29543 3.34654 3.39381 3.46785 3.58364 3.74523 3.93148 3.96245 4.22674 4.24291 4.26220 4.27390 4.34982 4.38315 4.41894 4.45761 4.46839 4.49737 4.60945 4.64136 4.68815 4.70337 4.79733 4.81025 4.82204 4.98749 5.02714 5.29028 5.70365 5.95397 6.39184 6.41598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.321 6.321 3 C 0.092 3.908 4 C 0.118 3.882 5 O -0.309 6.309 6 C 0.063 3.937 7 C -0.092 4.092 8 H 0.114 0.886 9 C -0.133 4.133 10 C 0.036 3.964 11 O -0.345 6.345 12 C 0.005 3.995 13 C 0.432 3.568 14 F -0.184 7.184 15 F -0.189 7.189 16 F -0.176 7.176 17 C -0.114 4.114 18 C -0.161 4.161 19 C -0.080 4.080 20 C -0.052 4.052 21 O -0.543 6.543 22 Si 0.577 3.423 23 C -0.104 4.104 24 Br 0.089 6.911 25 C -0.130 4.130 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.385 0.615 41 H -0.272 1.272 42 H -0.277 1.277 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -0.900 -1.961 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.045 3.955 4 C 0.072 3.928 5 O -0.223 6.223 6 C -0.011 4.011 7 C -0.110 4.110 8 H 0.132 0.868 9 C -0.170 4.170 10 C -0.006 4.006 11 O -0.263 6.263 12 C -0.090 4.090 13 C 0.378 3.622 14 F -0.166 7.166 15 F -0.170 7.170 16 F -0.158 7.158 17 C -0.151 4.151 18 C -0.181 4.181 19 C -0.082 4.082 20 C -0.162 4.162 21 O -0.350 6.350 22 Si 0.479 3.521 23 C -0.184 4.184 24 Br 0.174 6.826 25 C -0.151 4.151 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.234 0.766 41 H -0.197 1.197 42 H -0.202 1.202 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.472 0.086 -1.980 4.891 hybrid contribution 1.919 -0.802 -0.268 2.097 sum -2.553 -0.716 -2.248 3.476 Atomic orbital electron populations 1.23444 0.76168 1.05887 1.02684 1.86196 1.23447 1.25116 1.88731 1.18311 0.89246 0.85745 1.02191 1.18493 0.88666 0.86401 0.99283 1.86141 1.19779 1.28167 1.88165 1.22954 0.76923 0.97877 1.03349 1.22008 0.94951 0.96284 0.97806 0.86808 1.23629 0.95659 1.06706 0.90995 1.24184 0.94420 0.85253 0.96790 1.88081 1.43151 1.19066 1.75974 1.23270 0.87582 0.96249 1.01936 1.21528 0.84217 0.79706 0.76774 1.93181 1.47699 1.91089 1.84595 1.93188 1.96707 1.94350 1.32762 1.93171 1.94311 1.34185 1.94096 1.23326 0.91535 1.01577 0.98674 1.20926 1.01722 0.89131 1.06287 1.19915 0.91991 0.96500 0.99837 1.24857 0.85632 0.97084 1.08652 1.86509 1.22969 1.85237 1.40321 0.93111 1.00439 0.79081 0.79460 1.21093 0.93015 0.91841 1.12424 1.96282 1.63817 1.28317 1.94165 1.21121 1.01705 0.88746 1.03480 0.91137 0.86597 0.91149 0.89996 0.90057 0.85795 0.87379 0.93756 0.90951 0.87140 0.89358 0.85759 0.82106 0.84798 0.76573 1.19739 1.20212 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.05 16 2 O -0.32 -0.95 10.28 -79.54 -0.82 -1.76 16 3 C 0.09 0.25 6.70 22.57 0.15 0.40 16 4 C 0.12 0.40 6.70 22.57 0.15 0.55 16 5 O -0.31 -1.05 9.92 -79.76 -0.79 -1.84 16 6 C 0.06 -0.14 4.33 71.98 0.31 0.17 16 7 C -0.09 0.40 4.20 -10.27 -0.04 0.35 16 8 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 9 C -0.13 0.80 6.51 31.12 0.20 1.00 16 10 C 0.04 -0.04 0.85 -10.27 -0.01 -0.05 16 11 O -0.34 -0.19 8.35 -148.98 -1.24 -1.43 16 12 C 0.00 -0.01 10.34 113.37 1.17 1.16 16 13 C 0.43 1.10 2.51 71.98 0.18 1.28 16 14 F -0.18 -0.53 15.38 44.97 0.69 0.16 16 15 F -0.19 -1.29 17.10 44.97 0.77 -0.52 16 16 F -0.18 -0.45 15.82 44.97 0.71 0.27 16 17 C -0.11 0.25 6.89 31.12 0.21 0.46 16 18 C -0.16 -0.18 8.22 22.35 0.18 0.00 16 19 C -0.08 -0.10 5.13 -19.84 -0.10 -0.20 16 20 C -0.05 -0.08 2.84 71.24 0.20 0.12 16 21 O -0.54 -1.12 11.64 -148.98 -1.73 -2.86 16 22 Si 0.58 2.32 26.82 68.60 1.84 4.16 16 23 C -0.10 0.03 5.81 22.31 0.13 0.16 16 24 Br 0.09 -0.28 27.32 -20.37 -0.56 -0.84 16 25 C -0.13 0.15 8.77 22.37 0.20 0.34 16 26 H 0.07 -0.56 7.67 -2.38 -0.02 -0.58 16 27 H 0.12 -0.93 8.14 -2.39 -0.02 -0.94 16 28 H 0.07 -0.56 7.65 -2.39 -0.02 -0.58 16 29 H 0.08 -0.44 7.66 -2.39 -0.02 -0.46 16 30 H 0.08 -0.08 5.64 -2.39 -0.01 -0.09 16 31 H 0.12 -0.98 8.06 -2.39 -0.02 -1.00 16 32 H 0.11 -0.92 6.65 -2.39 -0.02 -0.94 16 33 H 0.04 -0.05 6.59 -2.39 -0.02 -0.06 16 34 H 0.07 -0.49 6.61 -2.39 -0.02 -0.50 16 35 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.09 0.02 8.10 -2.39 -0.02 0.00 16 37 H 0.12 -0.49 7.01 -2.39 -0.02 -0.51 16 38 H 0.16 -0.26 5.32 -2.91 -0.02 -0.28 16 39 H 0.13 0.00 7.96 -2.39 -0.02 -0.02 16 40 H 0.39 -1.33 8.43 -74.06 -0.62 -1.95 16 41 H -0.27 -2.92 7.11 99.48 0.71 -2.21 16 42 H -0.28 -2.52 7.11 99.48 0.71 -1.81 16 43 H 0.17 -1.11 6.30 -2.91 -0.02 -1.12 16 Total: 0.00 -15.53 370.52 3.43 -12.10 By element: Atomic # 1 Polarization: -14.75 SS G_CDS: 0.51 Total: -14.25 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.06 Total: 6.80 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -4.59 Total: -7.89 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 2.17 Total: -0.10 kcal Atomic # 14 Polarization: 2.32 SS G_CDS: 1.84 Total: 4.16 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.56 Total: -0.84 kcal Total: -15.53 3.43 -12.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_17321600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.652 kcal (2) G-P(sol) polarization free energy of solvation -15.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds