Wall clock time and date at job start Tue Mar 9 2021 19:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00197 * 2 1 4 4 C 1.38521 * 120.06545 * 0.02562 * 3 2 1 5 5 C 1.38360 * 119.99069 * 179.97438 * 4 3 2 6 6 Br 1.89099 * 119.93807 * 180.02562 * 5 4 3 7 7 C 1.38294 * 120.12483 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.93125 * 179.97438 * 7 5 4 9 9 O 1.42901 * 109.46835 * 196.18223 * 8 7 5 10 10 Si 1.86298 * 109.46914 * 76.18532 * 8 7 5 11 11 H 1.48497 * 109.47250 * 65.05733 * 10 8 7 12 12 H 1.48498 * 109.47022 * 185.06075 * 10 8 7 13 13 H 1.48506 * 109.47259 * 305.05571 * 10 8 7 14 14 C 1.38279 * 120.13556 * 359.97438 * 7 5 4 15 15 C 1.38521 * 120.00978 * 359.74738 * 14 7 5 16 16 O 1.36012 * 120.06474 * 180.26931 * 15 14 7 17 17 C 1.42906 * 116.99844 * 6.24216 * 16 15 14 18 18 Si 1.86304 * 109.46976 * 78.20398 * 17 16 15 19 19 C 1.86297 * 109.47114 * 54.92410 * 18 17 16 20 20 C 1.86297 * 109.47038 * 174.92777 * 18 17 16 21 21 C 1.86299 * 109.47200 * 294.92389 * 18 17 16 22 22 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47195 * 59.99807 * 1 2 3 24 24 H 1.09002 * 109.47131 * 300.00006 * 1 2 3 25 25 H 1.07999 * 120.00294 * 359.95510 * 4 3 2 26 26 H 1.09000 * 109.47228 * 316.18349 * 8 7 5 27 27 H 0.96694 * 114.00580 * 304.62872 * 9 8 7 28 28 H 1.08004 * 119.99428 * 179.97438 * 14 7 5 29 29 H 1.08994 * 109.47148 * 198.19898 * 17 16 15 30 30 H 1.08996 * 109.47268 * 318.20439 * 17 16 15 31 31 H 1.09000 * 109.47190 * 60.00132 * 19 18 17 32 32 H 1.09003 * 109.47320 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.47615 * 300.00039 * 19 18 17 34 34 H 1.09001 * 109.47208 * 59.99745 * 20 18 17 35 35 H 1.09003 * 109.47046 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46938 * 299.99667 * 20 18 17 37 37 H 1.09011 * 109.46936 * 64.86178 * 21 18 17 38 38 H 1.08999 * 109.47169 * 184.85580 * 21 18 17 39 39 H 1.09001 * 109.47543 * 304.86017 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3743 0.0005 5 6 1.9232 3.6063 0.0011 6 35 0.8937 5.1925 0.0025 7 6 3.3041 3.6798 0.0005 8 6 3.9856 5.0240 0.0005 9 8 5.3549 4.8638 -0.3755 10 14 3.8929 5.7671 1.7064 11 1 4.6744 4.9318 2.6533 12 1 4.4547 7.1414 1.6787 13 1 2.4757 5.8205 2.1468 14 6 4.0610 2.5225 0.0000 15 6 3.4363 1.2862 0.0053 16 8 4.1796 0.1472 0.0103 17 6 5.5942 0.2963 0.1483 18 14 6.0129 0.6229 1.9340 19 6 5.2997 -0.7309 2.9967 20 6 7.8640 0.6642 2.1402 21 6 5.2939 2.2620 2.4508 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.2148 2.3191 0.0002 26 1 3.4882 5.6835 -0.7106 27 1 5.8421 4.2332 0.1722 28 1 5.1393 2.5826 -0.0008 29 1 6.0895 -0.6175 -0.1798 30 1 5.9327 1.1327 -0.4631 31 1 5.7204 -1.6899 2.6944 32 1 5.5451 -0.5401 4.0415 33 1 4.2167 -0.7551 2.8761 34 1 8.2813 1.4563 1.5184 35 1 8.1090 0.8548 3.1851 36 1 8.2847 -0.2948 1.8379 37 1 4.2057 2.2096 2.4124 38 1 5.6108 2.4934 3.4677 39 1 5.6442 3.0419 1.7746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_8663_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:36:44 Heat of formation + Delta-G solvation = -105.588094 kcal Electronic energy + Delta-G solvation = -22067.751653 eV Core-core repulsion = 18760.764711 eV Total energy + Delta-G solvation = -3306.986942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 348.035 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90219 -39.58938 -39.10272 -37.13078 -33.06022 -32.03775 -30.31167 -29.94822 -28.99721 -28.54627 -28.25376 -27.84349 -26.04467 -23.12363 -22.52874 -19.84398 -18.48154 -18.19571 -17.76476 -17.16394 -16.35903 -16.27385 -15.91646 -15.84969 -15.65945 -14.83806 -14.50749 -14.28811 -14.24739 -14.17031 -13.93671 -13.76705 -13.62474 -13.49086 -13.38343 -13.21640 -13.11290 -12.80446 -12.66357 -12.44502 -12.30427 -12.06263 -11.90005 -11.50918 -11.03049 -10.99419 -10.89933 -10.83954 -10.44838 -9.64548 -8.72507 -0.03649 0.02571 0.55079 1.13535 1.35466 1.45608 1.53746 1.57461 1.61819 1.96484 2.17731 2.30064 2.37397 2.45967 3.17974 3.46261 3.53903 3.87442 3.97011 4.09270 4.17602 4.18988 4.33521 4.38774 4.47058 4.53741 4.56360 4.57792 4.61441 4.63343 4.71551 4.72387 4.75102 4.78687 5.08212 5.30855 5.31797 5.39269 5.50324 5.94379 6.36502 6.44032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.300 6.300 3 C 0.103 3.897 4 C -0.140 4.140 5 C -0.091 4.091 6 Br -0.039 7.039 7 C -0.080 4.080 8 C -0.078 4.078 9 O -0.533 6.533 10 Si 0.909 3.091 11 H -0.235 1.235 12 H -0.241 1.241 13 H -0.226 1.226 14 C -0.166 4.166 15 C 0.123 3.877 16 O -0.275 6.275 17 C -0.249 4.249 18 Si 0.984 3.016 19 C -0.442 4.442 20 C -0.447 4.447 21 C -0.452 4.452 22 H 0.105 0.895 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.148 0.852 26 H 0.129 0.871 27 H 0.370 0.630 28 H 0.150 0.850 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -1.167 1.721 2.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.213 6.213 3 C 0.056 3.944 4 C -0.160 4.160 5 C -0.171 4.171 6 Br 0.047 6.953 7 C -0.083 4.083 8 C -0.187 4.187 9 O -0.339 6.339 10 Si 0.726 3.274 11 H -0.158 1.158 12 H -0.164 1.164 13 H -0.148 1.148 14 C -0.185 4.185 15 C 0.076 3.924 16 O -0.187 6.187 17 C -0.370 4.370 18 Si 1.181 2.819 19 C -0.550 4.550 20 C -0.555 4.555 21 C -0.559 4.559 22 H 0.123 0.877 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.166 0.834 26 H 0.147 0.853 27 H 0.219 0.781 28 H 0.167 0.833 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.057 -0.185 2.033 2.042 hybrid contribution 0.217 -0.744 -0.275 0.823 sum 0.160 -0.930 1.758 1.996 Atomic orbital electron populations 1.23173 0.77996 1.04601 1.01523 1.86218 1.21423 1.24957 1.88707 1.18094 0.89033 0.85212 1.02044 1.20948 1.00586 0.89673 1.04803 1.21051 0.93059 0.92087 1.10896 1.96728 1.70207 1.30885 1.97491 1.19800 0.91950 0.96160 1.00373 1.25202 0.83977 0.96737 1.12809 1.86586 1.20237 1.66661 1.60433 0.86208 0.84196 0.81713 0.75302 1.15783 1.16400 1.14766 1.20747 1.00835 0.89948 1.06974 1.18245 0.88403 0.86424 0.99378 1.86180 1.18230 1.26993 1.87326 1.28265 0.81310 1.07329 1.20083 0.79916 0.67859 0.68478 0.65652 1.25982 1.07345 1.12468 1.09247 1.26048 1.19319 1.04887 1.05277 1.26558 1.07476 1.15652 1.06254 0.87693 0.92399 0.92377 0.83441 0.85350 0.78142 0.83282 0.86935 0.90795 0.91021 0.91073 0.90773 0.90879 0.90592 0.90867 0.90582 0.90407 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.30 -0.70 10.28 -34.22 -0.35 -1.05 16 3 C 0.10 0.22 6.70 -39.13 -0.26 -0.04 16 4 C -0.14 -0.15 8.77 -39.43 -0.35 -0.50 16 5 C -0.09 -0.13 5.96 -39.52 -0.24 -0.36 16 6 Br -0.04 -0.04 29.78 -68.01 -2.03 -2.07 16 7 C -0.08 -0.08 4.50 -104.59 -0.47 -0.55 16 8 C -0.08 -0.03 2.45 36.01 0.09 0.05 16 9 O -0.53 -0.11 12.41 -35.23 -0.44 -0.55 16 10 Si 0.91 0.44 26.45 -169.99 -4.50 -4.06 16 11 H -0.24 0.01 6.22 56.52 0.35 0.36 16 12 H -0.24 -0.36 7.11 56.52 0.40 0.04 16 13 H -0.23 -0.20 6.24 56.52 0.35 0.15 16 14 C -0.17 -0.06 4.90 -39.46 -0.19 -0.25 16 15 C 0.12 0.22 5.75 -39.13 -0.23 0.00 16 16 O -0.27 -0.50 9.57 -34.27 -0.33 -0.82 16 17 C -0.25 0.40 5.30 101.05 0.54 0.93 16 18 Si 0.98 -2.99 11.70 -169.99 -1.99 -4.98 16 19 C -0.44 0.49 8.65 101.05 0.87 1.37 16 20 C -0.45 1.33 8.65 101.05 0.87 2.21 16 21 C -0.45 0.92 6.44 101.05 0.65 1.57 16 22 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 23 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 24 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 25 H 0.15 -0.11 6.30 -52.49 -0.33 -0.44 16 26 H 0.13 0.04 7.15 -51.93 -0.37 -0.33 16 27 H 0.37 -1.19 5.68 45.56 0.26 -0.93 16 28 H 0.15 -0.33 2.67 -52.48 -0.14 -0.47 16 29 H 0.11 -0.30 7.96 -51.93 -0.41 -0.71 16 30 H 0.07 -0.21 6.04 -51.93 -0.31 -0.52 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 34 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 35 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 36 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 37 H 0.08 -0.06 6.66 -51.92 -0.35 -0.41 16 38 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 39 H 0.06 -0.21 4.62 -51.93 -0.24 -0.45 16 LS Contribution 323.95 15.07 4.88 4.88 Total: 0.00 -5.30 323.95 -7.37 -12.66 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -4.90 Total: -9.41 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 2.28 Total: 5.39 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -1.12 Total: -2.42 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: -6.48 Total: -9.04 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.03 Total: -2.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -5.30 -7.37 -12.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.926 kcal (2) G-P(sol) polarization free energy of solvation -5.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds