Wall clock time and date at job start Tue Mar 9 2021 19:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35996 * 117.00414 * 2 1 4 4 C 1.38516 * 120.06290 * 359.97438 * 3 2 1 5 5 C 1.38366 * 119.98764 * 180.02562 * 4 3 2 6 6 Br 1.89100 * 119.93755 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.12658 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.93335 * 180.02562 * 7 5 4 9 9 O 1.42899 * 109.47077 * 284.65721 * 8 7 5 10 10 Si 1.86299 * 109.47228 * 164.65182 * 8 7 5 11 11 H 1.48502 * 109.46977 * 65.72822 * 10 8 7 12 12 H 1.48501 * 109.46710 * 185.72509 * 10 8 7 13 13 H 1.48501 * 109.46877 * 305.72561 * 10 8 7 14 14 C 1.38282 * 120.13597 * 359.97438 * 7 5 4 15 15 C 1.38519 * 120.00694 * 0.30105 * 14 7 5 16 16 O 1.36010 * 120.06071 * 179.70085 * 15 14 7 17 17 C 1.42905 * 117.00262 * 359.97438 * 16 15 14 18 18 C 1.50697 * 109.47306 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.00012 * 269.72975 * 18 17 16 20 20 C 1.38237 * 119.99695 * 179.76669 * 19 18 17 21 21 C 1.38233 * 120.00092 * 0.50624 * 20 19 18 22 22 Si 1.86806 * 120.00188 * 179.72520 * 21 20 19 23 23 C 1.86298 * 109.46806 * 270.02061 * 22 21 20 24 24 C 1.86306 * 109.46908 * 30.02074 * 22 21 20 25 25 C 1.86297 * 109.47039 * 150.01904 * 22 21 20 26 26 C 1.38232 * 119.99848 * 359.74468 * 21 20 19 27 27 C 1.38232 * 120.00096 * 0.02562 * 26 21 20 28 28 H 1.09000 * 109.47031 * 300.00067 * 1 2 3 29 29 H 1.09009 * 109.47359 * 59.99898 * 1 2 3 30 30 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00802 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.46597 * 44.65094 * 8 7 5 33 33 H 0.96700 * 113.99653 * 299.99476 * 9 8 7 34 34 H 1.07993 * 119.99344 * 180.02562 * 14 7 5 35 35 H 1.08996 * 109.46916 * 300.00322 * 17 16 15 36 36 H 1.09003 * 109.46819 * 59.99789 * 17 16 15 37 37 H 1.07997 * 120.00396 * 359.97438 * 19 18 17 38 38 H 1.08007 * 119.99854 * 180.22873 * 20 19 18 39 39 H 1.08998 * 109.46895 * 60.00476 * 23 22 21 40 40 H 1.09003 * 109.46768 * 179.97438 * 23 22 21 41 41 H 1.08989 * 109.47318 * 299.99652 * 23 22 21 42 42 H 1.09000 * 109.46703 * 59.99879 * 24 22 21 43 43 H 1.08993 * 109.46711 * 180.02562 * 24 22 21 44 44 H 1.08998 * 109.46819 * 299.99957 * 24 22 21 45 45 H 1.09006 * 109.46928 * 60.00400 * 25 22 21 46 46 H 1.09002 * 109.47216 * 179.97438 * 25 22 21 47 47 H 1.09001 * 109.47701 * 300.00171 * 25 22 21 48 48 H 1.08008 * 119.99886 * 179.97438 * 26 21 20 49 49 H 1.08002 * 120.00315 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3743 -0.0005 5 6 1.9233 3.6062 -0.0011 6 35 0.8938 5.1925 -0.0011 7 6 3.3042 3.6798 -0.0005 8 6 3.9857 5.0239 -0.0005 9 8 3.8976 5.6026 -1.3041 10 14 5.7771 4.8119 0.4651 11 1 6.4744 4.0349 -0.5910 12 1 6.4145 6.1463 0.6004 13 1 5.8700 4.0856 1.7570 14 6 4.0611 2.5224 0.0011 15 6 3.4363 1.2861 -0.0042 16 8 4.1797 0.1472 -0.0087 17 6 5.6005 0.2997 -0.0084 18 6 6.2517 -1.0593 -0.0132 19 6 6.5556 -1.6843 1.1817 20 6 7.1485 -2.9331 1.1773 21 6 7.4470 -3.5522 -0.0220 22 14 8.2553 -5.2364 -0.0280 23 6 10.1075 -5.0362 -0.0276 24 6 7.7323 -6.1815 1.4899 25 6 7.7320 -6.1708 -1.5523 26 6 7.1478 -2.9249 -1.2169 27 6 6.5506 -1.6783 -1.2125 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2148 2.3192 -0.0014 32 1 3.4976 5.6786 0.7214 33 1 4.3121 5.0725 -1.9986 34 1 5.1393 2.5825 0.0019 35 1 5.9067 0.8529 -0.8963 36 1 5.9071 0.8460 0.8837 37 1 6.3268 -1.1985 2.1188 38 1 7.3826 -3.4230 2.1109 39 1 10.4136 -4.4895 0.8643 40 1 10.5791 -6.0189 -0.0306 41 1 10.4134 -4.4833 -0.9156 42 1 6.6486 -6.2985 1.4896 43 1 8.2043 -7.1640 1.4866 44 1 8.0385 -5.6347 2.3817 45 1 8.0380 -5.6178 -2.4405 46 1 8.2039 -7.1534 -1.5561 47 1 6.6483 -6.2879 -1.5527 48 1 7.3815 -3.4085 -2.1540 49 1 6.3172 -1.1879 -2.1461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_8663_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 19:38:16 Heat of formation + Delta-G solvation = -82.645085 kcal Electronic energy + Delta-G solvation = -29636.159504 eV Core-core repulsion = 25506.187646 eV Total energy + Delta-G solvation = -4129.971858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 424.066 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97121 -40.35398 -39.42850 -38.98645 -37.04825 -33.46653 -32.70309 -32.13520 -31.89485 -30.08079 -29.42882 -28.59894 -28.29906 -28.27179 -27.44233 -26.10190 -23.71736 -23.50198 -22.67841 -21.95320 -19.86292 -18.69329 -18.25862 -17.76170 -17.40627 -17.20601 -16.60438 -16.45875 -16.17100 -16.04919 -15.90140 -15.48562 -15.24676 -14.87494 -14.48329 -14.34905 -14.09911 -14.05700 -13.97077 -13.88319 -13.73214 -13.69170 -13.49641 -13.15566 -13.12028 -13.11065 -12.97032 -12.71740 -12.63287 -12.37243 -12.28908 -12.23812 -12.19612 -11.88514 -11.87257 -11.28191 -11.12604 -10.92977 -10.78635 -10.76215 -10.46848 -9.97501 -9.81737 -9.70682 -9.01665 -0.15392 -0.08114 0.13042 0.51052 0.55495 1.06235 1.35416 1.45623 1.82727 1.84948 1.92367 2.01995 2.13738 2.22096 2.22563 2.66283 2.98577 3.29240 3.46019 3.59992 3.68548 3.75521 3.87209 3.91855 4.08586 4.16446 4.19930 4.23130 4.27549 4.31801 4.41620 4.51692 4.58829 4.66063 4.69615 4.71294 4.84490 4.84695 4.88484 4.88991 4.89478 4.90573 4.96034 4.98480 5.14722 5.19857 5.38138 5.55196 5.58223 5.59022 5.67851 5.70283 5.86076 6.10939 6.33734 6.68043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.100 3.900 4 C -0.144 4.144 5 C -0.074 4.074 6 Br -0.033 7.033 7 C -0.088 4.088 8 C -0.083 4.083 9 O -0.537 6.537 10 Si 0.965 3.035 11 H -0.236 1.236 12 H -0.264 1.264 13 H -0.253 1.253 14 C -0.174 4.174 15 C 0.113 3.887 16 O -0.308 6.308 17 C 0.090 3.910 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.103 4.103 21 C -0.373 4.373 22 Si 1.127 2.873 23 C -0.461 4.461 24 C -0.463 4.463 25 C -0.463 4.463 26 C -0.103 4.103 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.162 0.838 32 H 0.120 0.880 33 H 0.388 0.612 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.140 0.860 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -2.933 -0.068 3.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.053 3.947 4 C -0.164 4.164 5 C -0.155 4.155 6 Br 0.053 6.947 7 C -0.091 4.091 8 C -0.194 4.194 9 O -0.343 6.343 10 Si 0.787 3.213 11 H -0.159 1.159 12 H -0.188 1.188 13 H -0.177 1.177 14 C -0.193 4.193 15 C 0.066 3.934 16 O -0.223 6.223 17 C 0.016 3.984 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.412 4.412 22 Si 1.314 2.686 23 C -0.568 4.568 24 C -0.570 4.570 25 C -0.570 4.570 26 C -0.121 4.121 27 C -0.138 4.138 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.180 0.820 32 H 0.138 0.862 33 H 0.237 0.763 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.158 0.842 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.134 -2.296 0.477 3.171 hybrid contribution -0.450 -0.162 -0.323 0.577 sum 1.684 -2.459 0.155 2.984 Atomic orbital electron populations 1.23418 0.76210 1.05840 1.02507 1.86198 1.23424 1.25323 1.88645 1.18334 0.89287 0.85605 1.01499 1.21179 1.01364 0.89333 1.04524 1.21425 0.93788 0.92234 1.08007 1.96759 1.69430 1.31002 1.97494 1.20030 0.92157 0.96154 1.00762 1.25107 1.11715 0.92305 0.90237 1.86564 1.82351 1.49325 1.16093 0.85486 0.73839 0.80686 0.81290 1.15894 1.18838 1.17664 1.21022 1.00834 0.90083 1.07334 1.18397 0.88555 0.86303 1.00148 1.86285 1.19298 1.28312 1.88359 1.21905 0.77353 0.95708 1.03444 1.19563 1.00569 0.95798 0.94489 1.21384 0.98851 0.96225 0.97527 1.21392 0.97087 0.94351 0.99293 1.28077 1.03742 1.15542 0.93814 0.77178 0.64801 0.60563 0.66068 1.26261 1.21148 1.04875 1.04474 1.26287 1.05807 1.09140 1.15777 1.26285 1.05812 1.09038 1.15851 1.21397 0.97042 0.94345 0.99324 1.21382 0.98754 0.96245 0.97466 0.91352 0.91380 0.86437 0.82032 0.86177 0.76339 0.82791 0.89521 0.89888 0.85480 0.84244 0.91342 0.90627 0.91311 0.91453 0.90600 0.90897 0.90861 0.90602 0.91445 0.84187 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.32 -2.11 10.28 -79.65 -0.82 -2.93 16 3 C 0.10 0.60 6.70 22.56 0.15 0.75 16 4 C -0.14 -0.46 8.77 22.37 0.20 -0.26 16 5 C -0.07 -0.29 6.22 22.31 0.14 -0.15 16 6 Br -0.03 -0.13 31.96 -20.37 -0.65 -0.78 16 7 C -0.09 -0.21 5.26 -19.84 -0.10 -0.31 16 8 C -0.08 -0.03 2.02 71.24 0.14 0.12 16 9 O -0.54 -0.35 12.71 -148.98 -1.89 -2.24 16 10 Si 0.97 -1.41 25.31 68.60 1.74 0.33 16 11 H -0.24 0.87 6.96 99.48 0.69 1.56 16 12 H -0.26 -0.42 7.11 99.48 0.71 0.29 16 13 H -0.25 0.11 7.11 99.48 0.71 0.82 16 14 C -0.17 -0.35 7.64 22.35 0.17 -0.18 16 15 C 0.11 0.66 6.70 22.57 0.15 0.81 16 16 O -0.31 -2.25 9.91 -79.80 -0.79 -3.04 16 17 C 0.09 0.17 4.87 71.23 0.35 0.52 16 18 C -0.10 -0.39 5.51 -19.87 -0.11 -0.50 16 19 C -0.12 -0.38 9.70 22.27 0.22 -0.16 16 20 C -0.10 -0.11 9.29 22.27 0.21 0.10 16 21 C -0.37 0.11 4.59 22.27 0.10 0.21 16 22 Si 1.13 -6.33 12.32 68.60 0.85 -5.48 16 23 C -0.46 1.81 8.65 113.37 0.98 2.79 16 24 C -0.46 1.85 8.53 113.37 0.97 2.82 16 25 C -0.46 1.89 8.53 113.37 0.97 2.86 16 26 C -0.10 -0.09 9.29 22.27 0.21 0.11 16 27 C -0.12 -0.34 9.70 22.27 0.22 -0.13 16 28 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 29 H 0.07 -0.28 7.66 -2.38 -0.02 -0.29 16 30 H 0.12 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.16 -0.10 6.30 -2.91 -0.02 -0.12 16 32 H 0.12 0.07 7.19 -2.39 -0.02 0.06 16 33 H 0.39 -2.34 8.70 -74.06 -0.64 -2.99 16 34 H 0.15 -0.28 3.27 -2.91 -0.01 -0.29 16 35 H 0.09 -0.14 7.61 -2.39 -0.02 -0.16 16 36 H 0.08 -0.09 7.60 -2.39 -0.02 -0.11 16 37 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.14 -0.45 7.43 -2.91 -0.02 -0.47 16 39 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 42 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 43 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 45 H 0.07 -0.34 7.69 -2.38 -0.02 -0.36 16 46 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 47 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 48 H 0.14 -0.48 7.43 -2.91 -0.02 -0.50 16 49 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 Total: 0.00 -14.99 421.70 5.55 -9.43 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: 1.07 Total: -5.75 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.06 Total: 10.47 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -3.50 Total: -8.22 kcal Atomic # 14 Polarization: -7.74 SS G_CDS: 2.58 Total: -5.15 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.65 Total: -0.78 kcal Total: -14.99 5.55 -9.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_8663_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.213 kcal (2) G-P(sol) polarization free energy of solvation -14.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds