Wall clock time and date at job start Tue Mar 24 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00282 * 2 1 4 4 O 1.20824 * 119.99944 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99947 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47387 * 26.81020 * 5 3 2 7 7 C 1.50699 * 109.47512 * 266.80528 * 5 3 2 8 8 N 1.29604 * 124.40622 * 126.09585 * 7 5 3 9 9 C 1.29956 * 128.82274 * 179.97438 * 8 7 5 10 10 N 1.39090 * 124.43697 * 179.97438 * 9 8 7 11 11 S 1.72320 * 111.12140 * 359.97438 * 9 8 7 12 12 S 1.72313 * 124.40537 * 305.79679 * 7 5 3 13 13 C 1.53000 * 109.47054 * 146.80430 * 5 3 2 14 14 O 1.42899 * 109.46945 * 65.40198 * 13 5 3 15 15 Si 1.86302 * 109.47287 * 305.40047 * 13 5 3 16 16 H 1.48495 * 109.47336 * 299.56277 * 15 13 5 17 17 H 1.48502 * 109.46834 * 59.56488 * 15 13 5 18 18 H 1.48498 * 109.47112 * 179.55868 * 15 13 5 19 19 C 1.50701 * 109.47384 * 185.39890 * 13 5 3 20 20 O 1.21280 * 120.00714 * 231.38851 * 19 13 5 21 21 N 1.34784 * 119.99730 * 51.39257 * 19 13 5 22 22 C 1.39919 * 119.99923 * 186.00261 * 21 19 13 23 23 C 1.38892 * 120.07248 * 209.89038 * 22 21 19 24 24 C 1.38088 * 119.92888 * 180.30173 * 23 22 21 25 25 C 1.38295 * 120.07168 * 359.46787 * 24 23 22 26 26 C 1.38261 * 120.14177 * 0.28270 * 25 24 23 27 27 C 1.50704 * 119.96326 * 179.97438 * 26 25 24 28 28 C 1.38129 * 120.07174 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.47161 * 59.99908 * 1 2 3 30 30 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46813 * 300.00303 * 1 2 3 32 32 H 0.96998 * 120.00159 * 359.97438 * 10 9 8 33 33 H 0.97000 * 119.99704 * 180.02562 * 10 9 8 34 34 H 0.97003 * 120.00100 * 6.00264 * 21 19 13 35 35 H 1.08005 * 120.03467 * 0.04650 * 23 22 21 36 36 H 1.08001 * 119.96398 * 179.75385 * 24 23 22 37 37 H 1.08007 * 119.93359 * 180.25463 * 25 24 23 38 38 H 1.08995 * 109.47400 * 90.00028 * 27 26 25 39 39 H 1.09002 * 109.46644 * 210.00078 * 27 26 25 40 40 H 1.09004 * 109.47320 * 329.99270 * 27 26 25 41 41 H 1.07997 * 120.03802 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9770 0.3778 -0.4645 7 6 4.0645 1.3798 1.4178 8 7 4.9454 0.5887 1.9451 9 6 5.4338 0.6005 3.1493 10 7 6.3828 -0.2998 3.6220 11 16 4.7516 1.8776 4.0836 12 16 3.5426 2.5718 2.5473 13 6 4.0122 2.5070 -0.7903 14 8 3.5801 3.6888 -0.1130 15 14 3.2608 2.4579 -2.4943 16 1 3.7182 1.2352 -3.2021 17 1 1.7802 2.4403 -2.3820 18 1 3.6850 3.6594 -3.2571 19 6 5.5149 2.5142 -0.9039 20 8 6.1419 3.5048 -0.5932 21 7 6.1622 1.4198 -1.3511 22 6 7.5607 1.3802 -1.3385 23 6 8.2444 0.6328 -2.2888 24 6 9.6245 0.5908 -2.2699 25 6 10.3263 1.3007 -1.3128 26 6 9.6489 2.0498 -0.3685 27 6 10.4178 2.8214 0.6730 28 6 8.2683 2.0918 -0.3788 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 6.7237 -0.9960 3.0389 33 1 6.7033 -0.2318 4.5351 34 1 5.6584 0.6596 -1.6816 35 1 7.6971 0.0818 -3.0393 36 1 10.1566 0.0067 -3.0061 37 1 11.4059 1.2696 -1.3025 38 1 10.6325 3.8223 0.2987 39 1 9.8233 2.8939 1.5838 40 1 11.3534 2.3061 0.8899 41 1 7.7398 2.6768 0.3593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008653662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:01:29 Heat of formation + Delta-G solvation = 15.587532 kcal Electronic energy + Delta-G solvation = -32048.296837 eV Core-core repulsion = 27652.082177 eV Total energy + Delta-G solvation = -4396.214659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 383.061 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12707 -41.23728 -40.92880 -39.37942 -37.79859 -36.86583 -35.74137 -35.22617 -33.22597 -31.73559 -30.67327 -28.90093 -27.86967 -27.60848 -25.85811 -24.53648 -23.42744 -22.42234 -22.06608 -21.23153 -20.93570 -20.15681 -19.16332 -18.54821 -18.11750 -18.06707 -17.90826 -17.50124 -17.20966 -17.01191 -16.94731 -16.27681 -15.98208 -15.69245 -15.26631 -14.90373 -14.60474 -14.59379 -14.41161 -14.09685 -13.97875 -13.89747 -13.72328 -13.55166 -13.19192 -13.10896 -13.00374 -12.86893 -12.47710 -12.33046 -12.10974 -12.08859 -11.99333 -11.86880 -11.62091 -11.47115 -11.43144 -11.11571 -10.70826 -10.14325 -9.53454 -8.90931 -8.86596 -8.00144 -3.10147 -2.46117 -1.22507 -0.47712 0.16044 0.45225 0.53474 0.58844 0.97260 1.25208 1.43132 1.63182 1.73753 2.03224 2.11844 2.27806 2.44984 2.99928 3.05866 3.41029 3.62654 3.83843 3.96714 4.06280 4.10221 4.20111 4.24927 4.34256 4.45801 4.53073 4.54994 4.58495 4.72755 4.78095 4.91152 4.91506 5.04370 5.17729 5.26606 5.49855 5.55633 5.60639 5.69209 5.83110 6.24338 6.36637 6.55590 6.75697 7.46790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.448 3.552 4 O -0.429 6.429 5 C -0.029 4.029 6 H 0.142 0.858 7 C 0.251 3.749 8 N -0.556 5.556 9 C 0.474 3.526 10 N -0.749 5.749 11 S -0.075 6.075 12 S 0.281 5.719 13 C -0.050 4.050 14 O -0.611 6.611 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.236 1.236 18 H -0.239 1.239 19 C 0.479 3.521 20 O -0.484 6.484 21 N -0.683 5.683 22 C 0.160 3.840 23 C -0.158 4.158 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.067 4.067 27 C -0.113 4.113 28 C -0.130 4.130 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.432 0.568 33 H 0.437 0.563 34 H 0.406 0.594 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -12.230 7.239 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.284 3.716 4 O -0.310 6.310 5 C -0.059 4.059 6 H 0.159 0.841 7 C -0.030 4.030 8 N -0.281 5.281 9 C 0.090 3.910 10 N -0.300 5.300 11 S 0.061 5.939 12 S 0.427 5.573 13 C -0.155 4.155 14 O -0.552 6.552 15 Si 0.781 3.219 16 H -0.184 1.184 17 H -0.159 1.159 18 H -0.162 1.162 19 C 0.267 3.733 20 O -0.355 6.355 21 N -0.332 5.332 22 C 0.065 3.935 23 C -0.179 4.179 24 C -0.112 4.112 25 C -0.162 4.162 26 C -0.068 4.068 27 C -0.170 4.170 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.268 0.732 33 H 0.273 0.727 34 H 0.242 0.758 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.000 -9.795 7.953 12.657 hybrid contribution 0.803 -1.465 -0.544 1.757 sum 1.803 -11.260 7.409 13.599 Atomic orbital electron populations 1.23449 0.74962 1.04423 1.03346 1.86492 1.24343 1.32132 1.84118 1.22595 0.90152 0.82699 0.76161 1.90837 1.65156 1.35428 1.39619 1.21551 0.90814 1.06841 0.86664 0.84091 1.27034 0.88830 0.88501 0.98602 1.60046 1.18874 1.33930 1.15208 1.23586 0.90461 0.90772 0.86223 1.42438 1.39196 1.30014 1.18321 1.89790 1.49371 1.27298 1.27418 1.90743 1.36650 1.27161 1.02707 1.25268 0.91076 0.93115 1.06003 1.95144 1.83197 1.25587 1.51282 0.85704 0.82147 0.81513 0.72523 1.18418 1.15857 1.16160 1.22676 0.91899 0.82191 0.76565 1.90636 1.67579 1.32150 1.45156 1.44082 1.04721 1.19304 1.65109 1.17800 0.82814 0.98165 0.94702 1.20888 0.94746 1.03614 0.98645 1.20921 0.93369 0.98667 0.98229 1.21000 0.99815 0.99011 0.96348 1.19806 0.93227 0.96942 0.96800 1.20785 0.99460 0.99936 0.96826 1.21009 0.93424 1.01403 0.99194 0.91075 0.87354 0.91412 0.73215 0.72745 0.75819 0.85663 0.85666 0.86092 0.90845 0.91912 0.91425 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.35 -0.18 10.57 -39.25 -0.41 -0.60 16 3 C 0.45 1.36 5.16 36.00 0.19 1.54 16 4 O -0.43 -2.66 13.70 -25.27 -0.35 -3.01 16 5 C -0.03 -0.07 1.73 -92.93 -0.16 -0.23 16 6 H 0.14 -0.24 7.01 -51.93 -0.36 -0.60 16 7 C 0.25 0.30 5.53 -13.22 -0.07 0.23 16 8 N -0.56 0.88 9.73 -10.68 -0.10 0.77 16 9 C 0.47 -1.88 8.68 -86.99 -0.75 -2.64 16 10 N -0.75 6.13 9.10 30.17 0.27 6.40 16 11 S -0.07 0.21 23.46 -89.81 -2.11 -1.90 16 12 S 0.28 0.42 21.33 -89.81 -1.92 -1.50 16 13 C -0.05 -0.32 0.31 -27.88 -0.01 -0.33 16 14 O -0.61 -6.59 13.91 -64.42 -0.90 -7.49 16 15 Si 0.97 5.36 24.52 -169.99 -4.17 1.19 16 16 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 17 H -0.24 -1.42 6.44 56.52 0.36 -1.06 16 18 H -0.24 -1.85 7.11 56.52 0.40 -1.45 16 19 C 0.48 3.07 5.12 -10.98 -0.06 3.01 16 20 O -0.48 -5.04 14.00 -14.20 -0.20 -5.24 16 21 N -0.68 -1.92 4.90 -9.86 -0.05 -1.97 16 22 C 0.16 0.54 6.34 -83.69 -0.53 0.01 16 23 C -0.16 -0.26 9.95 -39.39 -0.39 -0.65 16 24 C -0.09 -0.11 10.04 -39.62 -0.40 -0.51 16 25 C -0.14 -0.24 9.70 -39.55 -0.38 -0.63 16 26 C -0.07 -0.18 5.88 -104.65 -0.62 -0.80 16 27 C -0.11 -0.09 10.01 36.01 0.36 0.27 16 28 C -0.13 -0.56 8.33 -39.39 -0.33 -0.89 16 29 H 0.07 -0.08 8.13 -51.93 -0.42 -0.51 16 30 H 0.11 -0.48 8.14 -51.93 -0.42 -0.90 16 31 H 0.07 -0.12 8.13 -51.93 -0.42 -0.54 16 32 H 0.43 -4.06 8.95 -40.82 -0.37 -4.43 16 33 H 0.44 -4.66 8.96 -40.82 -0.37 -5.02 16 34 H 0.41 -0.24 7.37 -40.82 -0.30 -0.54 16 35 H 0.13 -0.08 8.06 -52.48 -0.42 -0.50 16 36 H 0.13 -0.12 8.06 -52.49 -0.42 -0.54 16 37 H 0.12 -0.01 8.06 -52.48 -0.42 -0.43 16 38 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.06 0.02 8.08 -51.93 -0.42 -0.40 16 40 H 0.07 -0.05 8.09 -51.93 -0.42 -0.47 16 41 H 0.13 0.78 6.17 -52.49 -0.32 0.46 16 LS Contribution 374.54 15.07 5.64 5.64 Total: 0.00 -14.86 374.54 -10.72 -25.58 By element: Atomic # 1 Polarization: -12.97 SS G_CDS: -4.35 Total: -17.32 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.09 Total: -0.58 kcal Atomic # 7 Polarization: 5.08 SS G_CDS: 0.12 Total: 5.20 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.86 Total: -16.33 kcal Atomic # 14 Polarization: 5.36 SS G_CDS: -4.17 Total: 1.19 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -4.02 Total: -3.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -14.86 -10.72 -25.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008653662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.167 kcal (2) G-P(sol) polarization free energy of solvation -14.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds