Wall clock time and date at job start Tue Mar 24 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00282 * 2 1 4 4 O 1.20824 * 119.99944 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99947 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.47387 * 26.81020 * 5 3 2 7 7 C 1.50699 * 109.47512 * 266.80528 * 5 3 2 8 8 N 1.29604 * 124.40622 * 126.09585 * 7 5 3 9 9 C 1.29956 * 128.82274 * 179.97438 * 8 7 5 10 10 N 1.39090 * 124.43697 * 179.97438 * 9 8 7 11 11 S 1.72320 * 111.12140 * 359.97438 * 9 8 7 12 12 S 1.72313 * 124.40537 * 305.79679 * 7 5 3 13 13 C 1.53000 * 109.47054 * 146.80430 * 5 3 2 14 14 O 1.42899 * 109.46945 * 65.40198 * 13 5 3 15 15 Si 1.86302 * 109.47287 * 305.40047 * 13 5 3 16 16 H 1.48495 * 109.47336 * 299.56277 * 15 13 5 17 17 H 1.48502 * 109.46834 * 59.56488 * 15 13 5 18 18 H 1.48498 * 109.47112 * 179.55868 * 15 13 5 19 19 C 1.50701 * 109.47384 * 185.39890 * 13 5 3 20 20 O 1.21280 * 120.00714 * 231.38851 * 19 13 5 21 21 N 1.34784 * 119.99730 * 51.39257 * 19 13 5 22 22 C 1.39919 * 119.99923 * 186.00261 * 21 19 13 23 23 C 1.38892 * 120.07248 * 209.89038 * 22 21 19 24 24 C 1.38088 * 119.92888 * 180.30173 * 23 22 21 25 25 C 1.38295 * 120.07168 * 359.46787 * 24 23 22 26 26 C 1.38261 * 120.14177 * 0.28270 * 25 24 23 27 27 C 1.50704 * 119.96326 * 179.97438 * 26 25 24 28 28 C 1.38129 * 120.07174 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.47161 * 59.99908 * 1 2 3 30 30 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46813 * 300.00303 * 1 2 3 32 32 H 0.96998 * 120.00159 * 359.97438 * 10 9 8 33 33 H 0.97000 * 119.99704 * 180.02562 * 10 9 8 34 34 H 0.97003 * 120.00100 * 6.00264 * 21 19 13 35 35 H 1.08005 * 120.03467 * 0.04650 * 23 22 21 36 36 H 1.08001 * 119.96398 * 179.75385 * 24 23 22 37 37 H 1.08007 * 119.93359 * 180.25463 * 25 24 23 38 38 H 1.08995 * 109.47400 * 90.00028 * 27 26 25 39 39 H 1.09002 * 109.46644 * 210.00078 * 27 26 25 40 40 H 1.09004 * 109.47320 * 329.99270 * 27 26 25 41 41 H 1.07997 * 120.03802 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9770 0.3778 -0.4645 7 6 4.0645 1.3798 1.4178 8 7 4.9454 0.5887 1.9451 9 6 5.4338 0.6005 3.1493 10 7 6.3828 -0.2998 3.6220 11 16 4.7516 1.8776 4.0836 12 16 3.5426 2.5718 2.5473 13 6 4.0122 2.5070 -0.7903 14 8 3.5801 3.6888 -0.1130 15 14 3.2608 2.4579 -2.4943 16 1 3.7182 1.2352 -3.2021 17 1 1.7802 2.4403 -2.3820 18 1 3.6850 3.6594 -3.2571 19 6 5.5149 2.5142 -0.9039 20 8 6.1419 3.5048 -0.5932 21 7 6.1622 1.4198 -1.3511 22 6 7.5607 1.3802 -1.3385 23 6 8.2444 0.6328 -2.2888 24 6 9.6245 0.5908 -2.2699 25 6 10.3263 1.3007 -1.3128 26 6 9.6489 2.0498 -0.3685 27 6 10.4178 2.8214 0.6730 28 6 8.2683 2.0918 -0.3788 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 6.7237 -0.9960 3.0389 33 1 6.7033 -0.2318 4.5351 34 1 5.6584 0.6596 -1.6816 35 1 7.6971 0.0818 -3.0393 36 1 10.1566 0.0067 -3.0061 37 1 11.4059 1.2696 -1.3025 38 1 10.6325 3.8223 0.2987 39 1 9.8233 2.8939 1.5838 40 1 11.3534 2.3061 0.8899 41 1 7.7398 2.6768 0.3593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008653662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:01:28 Heat of formation + Delta-G solvation = 9.048033 kcal Electronic energy + Delta-G solvation = -32048.580411 eV Core-core repulsion = 27652.082177 eV Total energy + Delta-G solvation = -4396.498233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 383.061 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.26423 -41.43805 -40.97422 -39.55703 -37.88046 -36.82098 -35.99510 -35.25098 -33.31300 -31.78509 -30.82344 -28.83750 -27.95503 -27.64035 -25.97824 -24.60413 -23.55557 -22.52956 -22.19563 -21.40571 -20.90431 -20.24369 -19.23453 -18.53763 -18.19163 -18.17503 -18.04562 -17.40800 -17.38002 -17.06622 -16.97992 -16.46352 -16.00839 -15.84926 -15.54485 -15.11547 -14.70496 -14.68556 -14.53965 -14.23771 -14.06087 -13.99870 -13.72019 -13.59994 -13.27001 -13.12109 -13.00967 -12.85693 -12.59829 -12.48642 -12.36208 -12.23958 -12.08744 -12.05086 -11.76811 -11.67527 -11.48838 -11.35353 -11.00491 -10.05236 -9.66462 -9.04231 -9.00676 -8.35731 -3.15402 -2.46441 -1.23878 -0.57583 0.16877 0.29919 0.45469 0.49368 0.90072 0.96177 1.21134 1.30355 1.44353 1.70164 2.05683 2.09731 2.38101 2.87404 3.00488 3.33964 3.63953 3.74326 3.90693 4.01338 4.15143 4.26365 4.28403 4.31787 4.42481 4.46543 4.62591 4.71965 4.73104 4.85127 4.91833 4.93744 5.10205 5.12877 5.21592 5.37436 5.44186 5.58336 5.70870 5.96841 6.12663 6.27958 6.46435 6.74766 7.24509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.452 3.548 4 O -0.468 6.468 5 C -0.041 4.041 6 H 0.179 0.821 7 C 0.269 3.731 8 N -0.550 5.550 9 C 0.467 3.533 10 N -0.698 5.698 11 S 0.030 5.970 12 S 0.241 5.759 13 C -0.038 4.038 14 O -0.744 6.744 15 Si 0.941 3.059 16 H -0.198 1.198 17 H -0.258 1.258 18 H -0.293 1.293 19 C 0.482 3.518 20 O -0.539 6.539 21 N -0.668 5.668 22 C 0.142 3.858 23 C -0.157 4.157 24 C -0.094 4.094 25 C -0.147 4.147 26 C -0.079 4.079 27 C -0.112 4.112 28 C -0.150 4.150 29 H 0.061 0.939 30 H 0.143 0.857 31 H 0.067 0.933 32 H 0.447 0.553 33 H 0.455 0.545 34 H 0.422 0.578 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -17.094 10.111 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.261 6.261 3 C 0.290 3.710 4 O -0.352 6.352 5 C -0.068 4.068 6 H 0.196 0.804 7 C -0.015 4.015 8 N -0.275 5.275 9 C 0.082 3.918 10 N -0.249 5.249 11 S 0.164 5.836 12 S 0.383 5.617 13 C -0.142 4.142 14 O -0.686 6.686 15 Si 0.760 3.240 16 H -0.121 1.121 17 H -0.182 1.182 18 H -0.219 1.219 19 C 0.271 3.729 20 O -0.414 6.414 21 N -0.318 5.318 22 C 0.047 3.953 23 C -0.178 4.178 24 C -0.112 4.112 25 C -0.165 4.165 26 C -0.080 4.080 27 C -0.169 4.169 28 C -0.170 4.170 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.286 0.714 33 H 0.295 0.705 34 H 0.260 0.740 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.665 -14.851 10.808 18.730 hybrid contribution 0.218 -0.332 -0.684 0.791 sum 3.884 -15.184 10.124 18.658 Atomic orbital electron populations 1.23738 0.73864 1.06488 1.02970 1.86490 1.25406 1.30667 1.83568 1.22781 0.90503 0.82659 0.75085 1.90824 1.66041 1.36932 1.41391 1.21403 0.90474 1.07316 0.87611 0.80424 1.27081 0.88114 0.87530 0.98758 1.60107 1.18424 1.33214 1.15718 1.24013 0.90913 0.91443 0.85447 1.42667 1.35232 1.27698 1.19337 1.89615 1.45776 1.27468 1.20761 1.90778 1.39195 1.28848 1.02908 1.24764 0.89935 0.93845 1.05694 1.95137 1.82731 1.29115 1.61637 0.86208 0.81293 0.81698 0.74843 1.12121 1.18194 1.21910 1.23122 0.92312 0.81985 0.75496 1.90577 1.68585 1.34330 1.47954 1.43944 1.04765 1.18945 1.64194 1.18023 0.82968 0.98916 0.95368 1.21187 0.95231 1.03017 0.98328 1.21290 0.93310 0.98294 0.98306 1.21296 1.00882 0.98436 0.95908 1.20035 0.92779 0.97424 0.97718 1.20804 1.00144 0.99522 0.96391 1.20950 0.94245 1.02079 0.99733 0.92025 0.83885 0.91447 0.71433 0.70503 0.73951 0.83254 0.83085 0.84176 0.91674 0.91860 0.89430 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.34 -0.56 10.57 -51.40 -0.54 -1.10 16 3 C 0.45 3.85 5.16 71.23 0.37 4.22 16 4 O -0.47 -7.93 13.70 28.20 0.39 -7.55 16 5 C -0.04 -0.26 1.73 -12.29 -0.02 -0.29 16 6 H 0.18 -0.60 7.01 -2.38 -0.02 -0.62 16 7 C 0.27 0.80 5.53 88.44 0.49 1.29 16 8 N -0.55 2.73 9.73 -187.72 -1.83 0.91 16 9 C 0.47 -5.33 8.68 179.08 1.55 -3.77 16 10 N -0.70 14.94 9.10 -58.45 -0.53 14.40 16 11 S 0.03 -0.25 23.46 -20.31 -0.48 -0.72 16 12 S 0.24 1.02 21.33 -20.31 -0.43 0.58 16 13 C -0.04 -0.65 0.31 29.85 0.01 -0.64 16 14 O -0.74 -21.27 13.91 -121.07 -1.68 -22.96 16 15 Si 0.94 15.03 24.52 68.60 1.68 16.71 16 16 H -0.20 -0.84 7.11 99.48 0.71 -0.13 16 17 H -0.26 -4.73 6.44 99.48 0.64 -4.09 16 18 H -0.29 -6.96 7.11 99.48 0.71 -6.25 16 19 C 0.48 7.91 5.12 87.66 0.45 8.36 16 20 O -0.54 -14.06 14.00 15.86 0.22 -13.83 16 21 N -0.67 -4.57 4.90 -303.50 -1.49 -6.06 16 22 C 0.14 1.03 6.34 38.16 0.24 1.27 16 23 C -0.16 -0.32 9.95 22.39 0.22 -0.09 16 24 C -0.09 -0.04 10.04 22.25 0.22 0.18 16 25 C -0.15 -0.30 9.70 22.29 0.22 -0.08 16 26 C -0.08 -0.44 5.88 -19.88 -0.12 -0.55 16 27 C -0.11 -0.17 10.01 71.24 0.71 0.54 16 28 C -0.15 -1.48 8.33 22.39 0.19 -1.30 16 29 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 30 H 0.14 -1.41 8.14 -2.39 -0.02 -1.43 16 31 H 0.07 -0.15 8.13 -2.39 -0.02 -0.17 16 32 H 0.45 -10.77 8.95 -92.71 -0.83 -11.60 16 33 H 0.46 -12.35 8.96 -92.71 -0.83 -13.18 16 34 H 0.42 -0.54 7.37 -92.71 -0.68 -1.22 16 35 H 0.15 -0.51 8.06 -2.91 -0.02 -0.53 16 36 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 37 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.06 0.06 8.08 -2.39 -0.02 0.04 16 40 H 0.09 -0.25 8.09 -2.38 -0.02 -0.27 16 41 H 0.11 1.57 6.17 -2.91 -0.02 1.56 16 Total: 0.00 -48.75 374.54 0.53 -48.22 By element: Atomic # 1 Polarization: -38.36 SS G_CDS: -0.51 Total: -38.87 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.73 Total: 10.28 kcal Atomic # 7 Polarization: 13.10 SS G_CDS: -3.84 Total: 9.25 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.62 Total: -45.44 kcal Atomic # 14 Polarization: 15.03 SS G_CDS: 1.68 Total: 16.71 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -0.91 Total: -0.14 kcal Total: -48.75 0.53 -48.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008653662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.267 kcal (2) G-P(sol) polarization free energy of solvation -48.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds