Wall clock time and date at job start Tue Mar 24 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99965 * 2 1 4 4 O 1.20827 * 120.00235 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99938 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47592 * 300.00553 * 5 3 2 7 7 C 1.50702 * 109.47013 * 60.00558 * 5 3 2 8 8 N 1.29605 * 124.40308 * 269.72883 * 7 5 3 9 9 C 1.29961 * 128.81730 * 179.65217 * 8 7 5 10 10 N 1.39094 * 124.43660 * 180.30924 * 9 8 7 11 11 S 1.72315 * 111.12288 * 0.60810 * 9 8 7 12 12 S 1.72313 * 124.40570 * 90.02212 * 7 5 3 13 13 C 1.52998 * 109.47223 * 180.02562 * 5 3 2 14 14 O 1.42900 * 109.47224 * 305.00309 * 13 5 3 15 15 Si 1.86305 * 109.47077 * 185.00033 * 13 5 3 16 16 H 1.48496 * 109.47246 * 300.00255 * 15 13 5 17 17 H 1.48503 * 109.47046 * 60.00567 * 15 13 5 18 18 H 1.48500 * 109.46750 * 180.02562 * 15 13 5 19 19 C 1.50703 * 109.46869 * 65.00729 * 13 5 3 20 20 O 1.21296 * 119.99545 * 239.99952 * 19 13 5 21 21 N 1.34772 * 120.00453 * 59.99787 * 19 13 5 22 22 C 1.39926 * 120.00204 * 184.63319 * 21 19 13 23 23 C 1.38884 * 120.07354 * 145.12101 * 22 21 19 24 24 C 1.38089 * 119.92872 * 180.25103 * 23 22 21 25 25 C 1.38302 * 120.07115 * 359.51767 * 24 23 22 26 26 C 1.38257 * 120.14173 * 0.27356 * 25 24 23 27 27 C 1.50701 * 119.96564 * 179.97438 * 26 25 24 28 28 C 1.38137 * 120.06977 * 359.95631 * 26 25 24 29 29 H 1.09002 * 109.47580 * 59.98811 * 1 2 3 30 30 H 1.08990 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46880 * 299.99504 * 1 2 3 32 32 H 0.96994 * 120.00211 * 180.31437 * 10 9 8 33 33 H 0.97002 * 120.00000 * 0.31268 * 10 9 8 34 34 H 0.97003 * 119.99733 * 4.62933 * 21 19 13 35 35 H 1.08005 * 120.03592 * 0.04843 * 23 22 21 36 36 H 1.08003 * 119.96290 * 179.78986 * 24 23 22 37 37 H 1.07997 * 119.92775 * 180.25059 * 25 24 23 38 38 H 1.08999 * 109.46953 * 90.00362 * 27 26 25 39 39 H 1.08995 * 109.47015 * 210.00064 * 27 26 25 40 40 H 1.09002 * 109.46983 * 330.00514 * 27 26 25 41 41 H 1.07997 * 120.03469 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9565 0.7805 0.8891 7 6 4.1046 0.5921 -1.2315 8 7 4.4196 -0.6636 -1.2938 9 6 4.8817 -1.3384 -2.3037 10 7 5.1852 -2.6954 -2.2703 11 16 5.0769 -0.3300 -3.6873 12 16 4.3882 1.3808 -2.7370 13 6 4.0001 2.7420 0.0002 14 8 3.3936 3.4187 -1.1027 15 14 5.8542 2.8415 -0.1536 16 1 6.4844 2.1383 0.9924 17 1 6.2806 2.1999 -1.4232 18 1 6.2752 4.2655 -0.1523 19 6 3.5674 3.3931 1.2886 20 8 2.8137 4.3431 1.2647 21 7 4.0178 2.9197 2.4674 22 6 3.5415 3.4608 3.6666 23 6 3.3715 2.6463 4.7786 24 6 2.8963 3.1824 5.9592 25 6 2.5991 4.5308 6.0378 26 6 2.7713 5.3452 4.9339 27 6 2.4456 6.8139 5.0238 28 6 3.2418 4.8142 3.7486 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 5.5318 -3.1346 -3.0626 33 1 5.0503 -3.2026 -1.4545 34 1 4.6722 2.2039 2.4844 35 1 3.6077 1.5941 4.7192 36 1 2.7607 2.5488 6.8232 37 1 2.2314 4.9484 6.9634 38 1 3.3319 7.3638 5.3404 39 1 2.1235 7.1751 4.0472 40 1 1.6460 6.9650 5.7490 41 1 3.3757 5.4507 2.8866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008653663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:01:35 Heat of formation + Delta-G solvation = 15.954726 kcal Electronic energy + Delta-G solvation = -31605.218032 eV Core-core repulsion = 27209.019295 eV Total energy + Delta-G solvation = -4396.198737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 383.061 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99991 -41.08706 -40.85194 -39.21200 -37.53773 -36.97859 -35.56128 -35.26428 -33.05239 -31.75507 -30.57540 -28.75483 -27.82483 -27.54335 -25.55699 -24.65832 -23.33409 -22.45754 -21.88403 -21.15452 -20.72492 -20.37294 -18.93884 -18.81739 -18.03319 -17.95450 -17.73337 -17.43308 -17.07636 -16.91260 -16.79799 -16.37094 -15.88637 -15.77485 -14.96690 -14.83017 -14.63094 -14.41116 -14.14126 -14.03768 -14.00010 -13.80706 -13.71383 -13.52505 -13.30821 -13.01636 -12.90429 -12.71526 -12.51860 -12.42492 -12.23234 -12.08365 -11.86216 -11.76023 -11.66069 -11.54443 -11.24706 -10.87672 -10.43825 -10.05709 -9.34773 -8.89656 -8.77351 -8.12230 -3.07509 -2.58963 -1.29348 -0.59341 0.03211 0.52874 0.62694 0.76604 1.06697 1.19467 1.24759 1.40073 1.63159 1.93166 2.07037 2.27754 2.46986 2.89819 3.13767 3.53832 3.67758 4.05430 4.11025 4.22168 4.23001 4.31362 4.34295 4.48430 4.50076 4.64875 4.65709 4.68874 4.80320 4.91652 4.99295 5.08528 5.27830 5.41081 5.45443 5.48908 5.67593 5.71498 5.84006 6.02293 6.35539 6.44568 6.83566 6.86869 7.66919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.460 3.540 4 O -0.415 6.415 5 C -0.039 4.039 6 H 0.146 0.854 7 C 0.255 3.745 8 N -0.551 5.551 9 C 0.481 3.519 10 N -0.747 5.747 11 S -0.116 6.116 12 S 0.299 5.701 13 C -0.055 4.055 14 O -0.600 6.600 15 Si 0.899 3.101 16 H -0.251 1.251 17 H -0.239 1.239 18 H -0.224 1.224 19 C 0.506 3.494 20 O -0.463 6.463 21 N -0.691 5.691 22 C 0.154 3.846 23 C -0.157 4.157 24 C -0.098 4.098 25 C -0.140 4.140 26 C -0.067 4.067 27 C -0.116 4.116 28 C -0.124 4.124 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.438 0.562 33 H 0.432 0.568 34 H 0.403 0.597 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -14.781 -2.501 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.294 3.706 4 O -0.294 6.294 5 C -0.064 4.064 6 H 0.163 0.837 7 C -0.030 4.030 8 N -0.274 5.274 9 C 0.097 3.903 10 N -0.297 5.297 11 S 0.022 5.978 12 S 0.445 5.555 13 C -0.158 4.158 14 O -0.546 6.546 15 Si 0.718 3.282 16 H -0.176 1.176 17 H -0.164 1.164 18 H -0.146 1.146 19 C 0.288 3.712 20 O -0.332 6.332 21 N -0.341 5.341 22 C 0.060 3.940 23 C -0.178 4.178 24 C -0.117 4.117 25 C -0.159 4.159 26 C -0.068 4.068 27 C -0.172 4.172 28 C -0.144 4.144 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.274 0.726 33 H 0.268 0.732 34 H 0.238 0.762 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.023 -12.923 -4.381 14.916 hybrid contribution -0.379 -1.667 1.232 2.107 sum 5.644 -14.591 -3.149 15.958 Atomic orbital electron populations 1.23324 0.75560 1.03781 1.03141 1.86481 1.23896 1.32978 1.84906 1.22381 0.89472 0.82410 0.76318 1.90899 1.64419 1.35285 1.38827 1.21584 0.91001 1.01179 0.92681 0.83679 1.27507 0.89332 0.86366 0.99805 1.60200 1.23612 1.12032 1.31530 1.23658 0.87807 0.91636 0.87155 1.42547 1.64254 1.02646 1.20208 1.90056 1.65032 1.19206 1.23520 1.91502 1.50999 1.06609 1.06427 1.24827 1.08237 0.87724 0.94987 1.95138 1.72316 1.60143 1.27003 0.86859 0.75045 0.85271 0.81070 1.17607 1.16389 1.14559 1.21655 0.80547 0.85305 0.83714 1.90645 1.31497 1.25415 1.85601 1.44043 1.45345 1.40152 1.04569 1.17770 0.98333 0.92290 0.85586 1.20852 1.04550 0.99092 0.93257 1.20890 0.98423 0.95245 0.97131 1.21014 1.02754 0.93822 0.98311 1.19858 0.97626 0.96376 0.92943 1.20811 1.01735 0.91627 1.03074 1.21232 1.01127 0.93687 0.98335 0.91655 0.87919 0.91447 0.72582 0.73157 0.76178 0.85937 0.85790 0.86111 0.91068 0.91191 0.91453 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.02 10.56 101.05 1.07 1.08 16 2 O -0.36 -0.81 10.48 -39.25 -0.41 -1.22 16 3 C 0.46 2.22 6.82 36.01 0.25 2.46 16 4 O -0.42 -3.91 13.59 -27.24 -0.37 -4.28 16 5 C -0.04 -0.09 1.81 -92.92 -0.17 -0.26 16 6 H 0.15 -0.24 7.46 -51.93 -0.39 -0.63 16 7 C 0.26 0.03 4.98 -13.22 -0.07 -0.04 16 8 N -0.55 1.58 9.73 -10.68 -0.10 1.48 16 9 C 0.48 -2.57 8.68 -86.98 -0.75 -3.33 16 10 N -0.75 7.17 9.10 30.18 0.27 7.44 16 11 S -0.12 0.44 23.46 -89.81 -2.11 -1.66 16 12 S 0.30 0.14 18.09 -89.81 -1.62 -1.49 16 13 C -0.06 -0.33 0.22 -27.88 -0.01 -0.33 16 14 O -0.60 -6.24 13.69 -64.99 -0.89 -7.13 16 15 Si 0.90 2.69 23.67 -169.99 -4.02 -1.34 16 16 H -0.25 0.00 7.05 56.52 0.40 0.40 16 17 H -0.24 -0.14 5.49 56.52 0.31 0.17 16 18 H -0.22 -1.18 7.11 56.52 0.40 -0.77 16 19 C 0.51 3.90 4.60 -10.99 -0.05 3.85 16 20 O -0.46 -5.69 13.53 -19.67 -0.27 -5.96 16 21 N -0.69 -2.88 4.84 -9.86 -0.05 -2.93 16 22 C 0.15 0.80 6.30 -83.69 -0.53 0.28 16 23 C -0.16 -0.46 9.97 -39.40 -0.39 -0.85 16 24 C -0.10 -0.26 10.04 -39.61 -0.40 -0.66 16 25 C -0.14 -0.49 9.70 -39.55 -0.38 -0.87 16 26 C -0.07 -0.33 5.88 -104.65 -0.62 -0.95 16 27 C -0.12 -0.35 10.01 36.01 0.36 0.01 16 28 C -0.12 -0.83 8.35 -39.39 -0.33 -1.15 16 29 H 0.06 0.06 8.13 -51.93 -0.42 -0.36 16 30 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 31 H 0.07 0.08 8.13 -51.93 -0.42 -0.34 16 32 H 0.44 -5.24 8.95 -40.82 -0.37 -5.60 16 33 H 0.43 -4.77 8.96 -40.82 -0.37 -5.14 16 34 H 0.40 0.09 7.40 -40.82 -0.30 -0.21 16 35 H 0.12 0.02 8.06 -52.48 -0.42 -0.41 16 36 H 0.12 0.03 8.06 -52.48 -0.42 -0.40 16 37 H 0.12 0.18 8.06 -52.49 -0.42 -0.24 16 38 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 39 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 41 H 0.14 1.18 6.22 -52.49 -0.33 0.85 16 LS Contribution 369.62 15.07 5.57 5.57 Total: 0.00 -15.93 369.62 -10.45 -26.38 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: -4.44 Total: -14.11 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.02 Total: -0.75 kcal Atomic # 7 Polarization: 5.87 SS G_CDS: 0.12 Total: 5.99 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.94 Total: -18.59 kcal Atomic # 14 Polarization: 2.69 SS G_CDS: -4.02 Total: -1.34 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -3.73 Total: -3.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -15.93 -10.45 -26.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008653663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.339 kcal (2) G-P(sol) polarization free energy of solvation -15.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds