Wall clock time and date at job start Tue Mar 24 2020 12:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 108.94116 * 2 1 4 4 C 1.53234 * 108.96362 * 241.35347 * 2 1 3 5 5 S 1.81961 * 104.47859 * 239.07954 * 4 2 1 6 6 C 1.76673 * 96.20795 * 0.31510 * 5 4 2 7 7 N 1.30287 * 125.35271 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00083 * 156.70653 * 7 6 5 9 9 C 1.50699 * 109.47272 * 237.68230 * 8 7 6 10 10 C 1.38235 * 119.99994 * 91.84543 * 9 8 7 11 11 C 1.38236 * 119.99770 * 180.25706 * 10 9 8 12 12 C 1.38239 * 119.99967 * 359.51002 * 11 10 9 13 13 C 1.38238 * 119.99670 * 0.46609 * 12 11 10 14 14 C 1.38229 * 119.99677 * 271.82357 * 9 8 7 15 15 N 1.36623 * 109.29317 * 359.66988 * 6 5 4 16 16 C 1.34772 * 121.03409 * 180.26504 * 15 6 5 17 17 O 1.21255 * 120.00237 * 175.55469 * 16 15 6 18 18 C 1.50703 * 120.00265 * 355.55295 * 16 15 6 19 19 O 1.42896 * 109.47544 * 199.56319 * 18 16 15 20 20 Si 1.50088 * 142.49669 * 320.90434 * 8 7 6 21 21 H 1.48500 * 167.99358 * 98.65245 * 20 8 7 22 22 H 1.28498 * 81.92912 * 194.41489 * 9 8 7 23 23 H 1.38100 * 78.50328 * 351.62874 * 10 9 8 24 24 C 1.50707 * 109.47181 * 319.56864 * 18 16 15 25 25 C 1.33359 * 125.19245 * 108.65701 * 24 18 16 26 26 C 1.38451 * 114.92824 * 180.02562 * 25 24 18 27 27 C 1.33484 * 114.89087 * 359.97438 * 26 25 24 28 28 Br 1.89100 * 125.20730 * 180.02562 * 27 26 25 29 29 S 1.75874 * 125.19045 * 288.35337 * 24 18 16 30 30 H 1.09006 * 109.46579 * 301.23046 * 1 2 3 31 31 H 1.08998 * 109.46851 * 61.22403 * 1 2 3 32 32 H 1.08997 * 109.47218 * 181.23152 * 1 2 3 33 33 H 1.09003 * 109.47374 * 178.76911 * 3 2 1 34 34 H 1.09004 * 109.47114 * 298.77201 * 3 2 1 35 35 H 1.08997 * 109.47110 * 58.76741 * 3 2 1 36 36 H 1.09000 * 110.43566 * 358.06168 * 4 2 1 37 37 H 1.09006 * 110.43358 * 120.44260 * 4 2 1 38 38 H 1.08998 * 109.47186 * 117.67559 * 8 7 6 39 39 H 1.03505 * 46.57555 * 54.93468 * 20 8 7 40 40 H 0.93066 * 51.30538 * 169.22092 * 23 10 9 41 41 H 1.07994 * 120.00193 * 179.72350 * 11 10 9 42 42 H 1.08003 * 119.99812 * 180.25788 * 12 11 10 43 43 H 1.08005 * 119.99607 * 179.78603 * 13 12 11 44 44 H 1.08007 * 120.00405 * 359.97438 * 14 9 8 45 45 H 1.08003 * 122.53905 * 0.02562 * 25 24 18 46 46 H 1.08002 * 122.55666 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0266 1.4471 0.0000 4 6 2.0280 -0.6947 -1.2718 5 16 3.0320 -2.0864 -0.6666 6 6 2.7903 -1.7626 1.0533 7 7 3.2924 -2.4634 2.0302 8 6 3.4673 -1.8570 3.3522 9 6 4.9162 -1.9443 3.7573 10 6 5.7801 -0.9061 3.4624 11 6 7.1103 -0.9886 3.8292 12 6 7.5745 -2.1047 4.4999 13 6 6.7105 -3.1426 4.7951 14 6 5.3813 -3.0623 4.4240 15 7 1.9997 -0.6578 1.1979 16 6 1.6686 -0.1955 2.4198 17 8 1.0335 0.8318 2.5278 18 6 2.0875 -0.9553 3.6520 19 8 1.2718 -0.5590 4.7563 20 14 3.8723 -0.5824 4.0335 21 1 3.9667 0.7262 4.7290 22 1 4.4250 -1.6484 4.9072 23 1 4.6478 -0.5277 2.7683 24 6 1.9228 -2.4337 3.4108 25 6 2.9219 -3.3024 3.2508 26 6 2.5278 -4.6129 3.0405 27 6 1.2073 -4.8077 3.0304 28 35 0.3532 -6.4745 2.7696 29 16 0.3836 -3.2781 3.3047 30 1 -0.3633 0.5329 0.8788 31 1 -0.3633 0.4947 -0.9008 32 1 -0.3633 -1.0274 0.0221 33 1 3.1164 1.4573 0.0221 34 1 1.6767 1.9514 -0.9008 35 1 1.6406 1.9637 0.8787 36 1 1.1862 -1.0566 -1.8622 37 1 2.6411 -0.0138 -1.8622 38 1 2.8540 -2.3886 4.0798 39 1 3.1627 -0.8110 3.3154 40 1 5.4166 -0.0327 2.9416 41 1 7.7862 -0.1795 3.5950 42 1 8.6129 -2.1672 4.7901 43 1 7.0739 -4.0162 5.3160 44 1 4.7062 -3.8731 4.6550 45 1 3.9600 -3.0061 3.2829 46 1 3.2349 -5.4163 2.8957 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348945769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:29:37 Heat of formation + Delta-G solvation = 1217.499234 kcal Electronic energy + Delta-G solvation = -38191.312339 eV Core-core repulsion = 33784.543135 eV Total energy + Delta-G solvation = -4406.769204 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 467.001 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -50.58260 -40.77285 -39.74490 -36.90511 -35.67847 -34.05903 -33.06885 -32.35782 -30.84982 -30.57551 -29.12543 -27.83295 -27.28823 -27.19525 -25.33901 -24.26184 -23.09146 -22.28640 -21.46752 -20.34952 -19.03102 -18.62099 -17.97661 -17.42415 -16.92756 -16.23162 -15.99832 -15.80479 -15.26071 -14.81484 -14.37741 -14.25295 -13.99375 -13.83858 -13.71202 -13.55052 -13.36848 -13.03169 -12.77470 -12.70017 -12.49143 -12.36748 -12.20974 -11.89478 -11.77872 -11.56055 -11.48174 -11.27596 -11.12648 -10.80634 -10.64349 -10.46238 -10.37086 -10.18737 -9.96731 -9.92363 -9.40959 -9.19671 -8.76193 -8.57575 -8.33461 -8.04961 -7.83506 -7.57076 -6.78810 -6.33482 -5.97959 -5.89646 -5.67659 1.14842 1.37226 1.45954 1.56432 1.73878 1.97084 2.18161 2.19539 2.28335 2.64028 2.80859 3.13313 3.32228 3.41101 3.53943 3.81430 4.04852 4.20036 4.28635 4.36975 4.70917 4.85275 5.06873 5.25410 5.35749 5.39787 5.41159 5.45953 5.54610 5.68498 5.71283 5.76718 5.82546 5.85333 5.88462 5.96612 5.98124 6.00517 6.02801 6.25284 6.35533 6.42474 6.45616 6.54589 6.60075 6.66326 6.83621 6.86150 7.15211 7.25545 7.37600 7.64777 8.14067 8.63780 9.05731 Molecular weight = 467.00amu Principal moments of inertia in cm(-1) A = 0.005974 B = 0.004588 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4686.166368 B = 6101.356743 C = 8376.549618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 C -0.165 4.165 4 C -0.105 4.105 5 S -0.079 6.079 6 C 0.256 3.744 7 N -0.390 5.390 8 C -0.742 4.742 9 C 0.016 3.984 10 C -0.438 4.438 11 C 0.000 4.000 12 C -0.261 4.261 13 C -0.059 4.059 14 C -0.235 4.235 15 N -0.540 5.540 16 C 0.449 3.551 17 O -0.504 6.504 18 C -0.081 4.081 19 O -0.749 6.749 20 Si 1.425 2.575 21 H -0.243 1.243 22 H -0.181 1.181 23 H -0.149 1.149 24 C -0.255 4.255 25 C 0.019 3.981 26 C -0.133 4.133 27 C -0.177 4.177 28 Br -0.021 7.021 29 S 0.112 5.888 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.302 0.698 39 H 0.266 0.734 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.252 0.748 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -2.407 -7.314 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 C -0.223 4.223 4 C -0.254 4.254 5 S 0.154 5.846 6 C -0.107 4.107 7 N -0.106 5.106 8 C -0.852 4.852 9 C 0.011 3.989 10 C -0.454 4.454 11 C -0.018 4.018 12 C -0.279 4.279 13 C -0.077 4.077 14 C -0.253 4.253 15 N -0.273 5.273 16 C 0.240 3.760 17 O -0.375 6.375 18 C -0.145 4.145 19 O -0.693 6.693 20 Si 1.296 2.704 21 H -0.175 1.175 22 H -0.161 1.161 23 H -0.097 1.097 24 C -0.382 4.382 25 C -0.037 4.037 26 C -0.170 4.170 27 C -0.373 4.373 28 Br 0.063 6.937 29 S 0.378 5.622 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.311 0.689 39 H 0.272 0.728 40 H 0.207 0.793 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.264 0.736 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.210 -3.011 -7.714 8.881 hybrid contribution -0.655 -1.484 -0.396 1.670 sum 2.554 -4.495 -8.109 9.617 Atomic orbital electron populations 1.22265 0.92962 1.02687 1.03793 1.20325 0.95870 0.94032 0.83254 1.22399 1.01730 0.93968 1.04194 1.24488 1.02776 0.98459 0.99692 1.85980 1.62446 1.39974 0.96211 1.23479 1.04202 0.87438 0.95616 1.68852 1.26961 1.18571 0.96187 1.35361 0.94440 1.46284 1.09126 1.16947 0.97937 0.95524 0.88488 1.21933 0.98877 1.04204 1.20422 1.20827 0.94156 0.95497 0.91320 1.20493 0.99119 0.96583 1.11736 1.20803 0.93005 0.97338 0.96544 1.20845 0.97273 1.02449 1.04728 1.46479 1.45807 1.27613 1.07427 1.25676 0.78673 0.87169 0.84528 1.90429 1.37059 1.24483 1.85578 1.25562 1.10696 0.84894 0.93317 1.95311 1.55617 1.83267 1.35128 0.66163 0.40023 0.72913 0.91310 1.17492 1.16149 1.09684 1.28010 0.90738 1.02371 1.17119 1.22497 1.05525 0.88333 0.87378 1.20808 0.93595 0.99467 1.03177 1.26517 0.99449 0.96844 1.14520 1.96573 1.79323 1.21825 1.95973 1.84564 1.11455 0.94640 1.71550 0.89804 0.91408 0.92564 0.91813 0.91627 0.89136 0.87511 0.86773 0.68933 0.72843 0.79261 0.86979 0.87806 0.87632 0.86201 0.73606 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.01 37.16 0.30 -2.27 16 2 C 0.15 2.44 1.02 -132.76 -0.14 2.31 16 3 C -0.16 -2.37 8.00 37.16 0.30 -2.07 16 4 C -0.10 -1.35 6.59 37.28 0.25 -1.11 16 5 S -0.08 -1.28 23.23 -107.50 -2.50 -3.78 16 6 C 0.26 5.04 7.15 -89.09 -0.64 4.40 16 7 N -0.39 -7.94 5.55 ******* -6.24 -14.18 16 8 C -0.74 -15.32 0.01 -179.56 0.00 -15.32 16 9 C 0.02 0.31 2.26 -104.63 -0.24 0.07 16 10 C -0.44 -7.51 6.07 -39.58 -0.24 -7.75 16 11 C 0.00 0.00 10.05 -39.58 -0.40 -0.40 16 12 C -0.26 -4.12 10.05 -39.58 -0.40 -4.52 16 13 C -0.06 -0.97 10.05 -39.58 -0.40 -1.37 16 14 C -0.23 -4.28 7.84 -39.59 -0.31 -4.59 16 15 N -0.54 -10.74 2.47 -103.48 -0.26 -11.00 16 16 C 0.45 10.65 5.17 -10.99 -0.06 10.60 16 17 O -0.50 -13.00 12.83 -13.53 -0.17 -13.17 16 18 C -0.08 -2.00 0.72 -83.80 -0.06 -2.06 16 19 O -0.75 -23.07 17.21 -54.34 -0.94 -24.00 16 20 Si 1.42 28.29 15.26 -169.99 -2.59 25.70 16 21 H -0.24 -4.50 7.11 56.52 0.40 -4.10 16 22 H -0.18 -3.53 3.22 -41.22 -0.13 -3.66 16 23 H -0.15 -2.63 2.86 -36.76 -0.11 -2.73 16 24 C -0.26 -5.91 2.74 -97.29 -0.27 -6.17 16 25 C 0.02 0.39 2.73 -141.81 -0.39 0.00 16 26 C -0.13 -2.57 9.97 -41.17 -0.41 -2.99 16 27 C -0.18 -3.45 6.97 29.07 0.20 -3.25 16 28 Br -0.02 -0.33 34.07 -68.01 -2.32 -2.65 16 29 S 0.11 2.54 23.27 -107.50 -2.50 0.03 16 30 H 0.08 1.63 6.27 -51.93 -0.33 1.30 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.56 5.98 -51.93 -0.31 1.25 16 36 H 0.11 1.19 7.63 -51.93 -0.40 0.79 16 37 H 0.11 1.16 7.63 -51.93 -0.40 0.77 16 38 H 0.30 6.79 1.78 -283.03 -0.50 6.29 16 39 H 0.27 5.65 0.00 0.00 0.00 5.65 16 40 H 0.19 2.92 4.75 -52.49 -0.25 2.67 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.10 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.12 2.13 6.68 -52.48 -0.35 1.78 16 45 H 0.25 4.95 0.85 -272.47 -0.23 4.72 16 46 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -31.74 358.86 -20.99 -52.72 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -5.98 Total: 21.39 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: -2.89 Total: -36.47 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: -6.50 Total: -25.19 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.11 Total: -37.17 kcal Atomic # 14 Polarization: 28.29 SS G_CDS: -2.59 Total: 25.70 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -5.00 Total: -3.74 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -20.99 -52.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348945769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1270.221 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1238.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -20.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 1217.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds