Wall clock time and date at job start Tue Mar 24 2020 12:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 108.94116 * 2 1 4 4 C 1.53234 * 108.96362 * 241.35347 * 2 1 3 5 5 S 1.81961 * 104.47859 * 239.07954 * 4 2 1 6 6 C 1.76673 * 96.20795 * 0.31510 * 5 4 2 7 7 N 1.30287 * 125.35271 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00083 * 156.70653 * 7 6 5 9 9 C 1.50699 * 109.47272 * 237.68230 * 8 7 6 10 10 C 1.38235 * 119.99994 * 91.84543 * 9 8 7 11 11 C 1.38236 * 119.99770 * 180.25706 * 10 9 8 12 12 C 1.38239 * 119.99967 * 359.51002 * 11 10 9 13 13 C 1.38238 * 119.99670 * 0.46609 * 12 11 10 14 14 C 1.38229 * 119.99677 * 271.82357 * 9 8 7 15 15 N 1.36623 * 109.29317 * 359.66988 * 6 5 4 16 16 C 1.34772 * 121.03409 * 180.26504 * 15 6 5 17 17 O 1.21255 * 120.00237 * 175.55469 * 16 15 6 18 18 C 1.50703 * 120.00265 * 355.55295 * 16 15 6 19 19 O 1.42896 * 109.47544 * 199.56319 * 18 16 15 20 20 Si 1.50088 * 142.49669 * 320.90434 * 8 7 6 21 21 H 1.48500 * 167.99358 * 98.65245 * 20 8 7 22 22 H 1.28498 * 81.92912 * 194.41489 * 9 8 7 23 23 H 1.38100 * 78.50328 * 351.62874 * 10 9 8 24 24 C 1.50707 * 109.47181 * 319.56864 * 18 16 15 25 25 C 1.33359 * 125.19245 * 108.65701 * 24 18 16 26 26 C 1.38451 * 114.92824 * 180.02562 * 25 24 18 27 27 C 1.33484 * 114.89087 * 359.97438 * 26 25 24 28 28 Br 1.89100 * 125.20730 * 180.02562 * 27 26 25 29 29 S 1.75874 * 125.19045 * 288.35337 * 24 18 16 30 30 H 1.09006 * 109.46579 * 301.23046 * 1 2 3 31 31 H 1.08998 * 109.46851 * 61.22403 * 1 2 3 32 32 H 1.08997 * 109.47218 * 181.23152 * 1 2 3 33 33 H 1.09003 * 109.47374 * 178.76911 * 3 2 1 34 34 H 1.09004 * 109.47114 * 298.77201 * 3 2 1 35 35 H 1.08997 * 109.47110 * 58.76741 * 3 2 1 36 36 H 1.09000 * 110.43566 * 358.06168 * 4 2 1 37 37 H 1.09006 * 110.43358 * 120.44260 * 4 2 1 38 38 H 1.08998 * 109.47186 * 117.67559 * 8 7 6 39 39 H 1.03505 * 46.57555 * 54.93468 * 20 8 7 40 40 H 0.93066 * 51.30538 * 169.22092 * 23 10 9 41 41 H 1.07994 * 120.00193 * 179.72350 * 11 10 9 42 42 H 1.08003 * 119.99812 * 180.25788 * 12 11 10 43 43 H 1.08005 * 119.99607 * 179.78603 * 13 12 11 44 44 H 1.08007 * 120.00405 * 359.97438 * 14 9 8 45 45 H 1.08003 * 122.53905 * 0.02562 * 25 24 18 46 46 H 1.08002 * 122.55666 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0266 1.4471 0.0000 4 6 2.0280 -0.6947 -1.2718 5 16 3.0320 -2.0864 -0.6666 6 6 2.7903 -1.7626 1.0533 7 7 3.2924 -2.4634 2.0302 8 6 3.4673 -1.8570 3.3522 9 6 4.9162 -1.9443 3.7573 10 6 5.7801 -0.9061 3.4624 11 6 7.1103 -0.9886 3.8292 12 6 7.5745 -2.1047 4.4999 13 6 6.7105 -3.1426 4.7951 14 6 5.3813 -3.0623 4.4240 15 7 1.9997 -0.6578 1.1979 16 6 1.6686 -0.1955 2.4198 17 8 1.0335 0.8318 2.5278 18 6 2.0875 -0.9553 3.6520 19 8 1.2718 -0.5590 4.7563 20 14 3.8723 -0.5824 4.0335 21 1 3.9667 0.7262 4.7290 22 1 4.4250 -1.6484 4.9072 23 1 4.6478 -0.5277 2.7683 24 6 1.9228 -2.4337 3.4108 25 6 2.9219 -3.3024 3.2508 26 6 2.5278 -4.6129 3.0405 27 6 1.2073 -4.8077 3.0304 28 35 0.3532 -6.4745 2.7696 29 16 0.3836 -3.2781 3.3047 30 1 -0.3633 0.5329 0.8788 31 1 -0.3633 0.4947 -0.9008 32 1 -0.3633 -1.0274 0.0221 33 1 3.1164 1.4573 0.0221 34 1 1.6767 1.9514 -0.9008 35 1 1.6406 1.9637 0.8787 36 1 1.1862 -1.0566 -1.8622 37 1 2.6411 -0.0138 -1.8622 38 1 2.8540 -2.3886 4.0798 39 1 3.1627 -0.8110 3.3154 40 1 5.4166 -0.0327 2.9416 41 1 7.7862 -0.1795 3.5950 42 1 8.6129 -2.1672 4.7901 43 1 7.0739 -4.0162 5.3160 44 1 4.7062 -3.8731 4.6550 45 1 3.9600 -3.0061 3.2829 46 1 3.2349 -5.4163 2.8957 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348945769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:29:32 Heat of formation + Delta-G solvation = 1182.282574 kcal Electronic energy + Delta-G solvation = -38192.839448 eV Core-core repulsion = 33784.543135 eV Total energy + Delta-G solvation = -4408.296313 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 467.001 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -52.10243 -42.26271 -41.21067 -38.41653 -37.24026 -35.42749 -34.59442 -33.81392 -32.25036 -32.03766 -30.75664 -28.99241 -28.79902 -28.44652 -26.84770 -25.74735 -24.49392 -23.82597 -22.85279 -21.71433 -20.52531 -20.13752 -19.50706 -18.87963 -18.26543 -17.65585 -17.50929 -17.29935 -16.69218 -16.14452 -15.85230 -15.69518 -15.41042 -15.19306 -15.05132 -14.92916 -14.83324 -14.37333 -14.19804 -14.10883 -13.91084 -13.68409 -13.46777 -13.36979 -13.02336 -12.92623 -12.83844 -12.72085 -12.42955 -12.26570 -11.96858 -11.90916 -11.77129 -11.48494 -11.42045 -11.34635 -11.03041 -10.80495 -10.34408 -10.11304 -9.84321 -9.55307 -9.26751 -9.15132 -8.54630 -8.01245 -7.54366 -7.43316 -7.29151 -0.43362 -0.14966 0.03188 0.05210 0.29779 0.59086 0.67680 0.81773 0.98864 1.05500 1.29569 1.54001 1.64726 1.95728 2.17680 2.34797 2.66991 2.84026 2.95865 3.17452 3.34928 3.62625 3.71511 3.84017 3.91391 4.06587 4.13356 4.25497 4.29431 4.33723 4.39663 4.45535 4.51380 4.53757 4.54924 4.61555 4.72636 4.74415 4.82077 4.89719 4.96450 5.03171 5.08721 5.14188 5.28646 5.31668 5.39426 5.44130 5.81128 5.90093 5.90748 6.32637 6.57121 7.03974 7.49313 Molecular weight = 467.00amu Principal moments of inertia in cm(-1) A = 0.005974 B = 0.004588 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4686.166368 B = 6101.356743 C = 8376.549618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.160 4.160 4 C -0.095 4.095 5 S -0.043 6.043 6 C 0.242 3.758 7 N -0.401 5.401 8 C -0.659 4.659 9 C 0.051 3.949 10 C -0.395 4.395 11 C 0.014 3.986 12 C -0.244 4.244 13 C -0.041 4.041 14 C -0.269 4.269 15 N -0.536 5.536 16 C 0.459 3.541 17 O -0.551 6.551 18 C -0.161 4.161 19 O -0.883 6.883 20 Si 1.029 2.971 21 H -0.260 1.260 22 H -0.161 1.161 23 H 0.098 0.902 24 C -0.274 4.274 25 C 0.035 3.965 26 C -0.129 4.129 27 C -0.168 4.168 28 Br 0.018 6.982 29 S 0.012 5.988 30 H 0.034 0.966 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.260 0.740 39 H 0.325 0.675 40 H 0.204 0.796 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.114 0.886 45 H 0.265 0.735 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.200 -4.617 -12.858 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 C -0.219 4.219 4 C -0.244 4.244 5 S 0.190 5.810 6 C -0.121 4.121 7 N -0.118 5.118 8 C -0.769 4.769 9 C 0.047 3.953 10 C -0.411 4.411 11 C -0.004 4.004 12 C -0.262 4.262 13 C -0.059 4.059 14 C -0.288 4.288 15 N -0.268 5.268 16 C 0.250 3.750 17 O -0.427 6.427 18 C -0.227 4.227 19 O -0.830 6.830 20 Si 0.894 3.106 21 H -0.192 1.192 22 H -0.131 1.131 23 H 0.147 0.853 24 C -0.400 4.400 25 C -0.021 4.021 26 C -0.165 4.165 27 C -0.364 4.364 28 Br 0.101 6.899 29 S 0.276 5.724 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.269 0.731 39 H 0.331 0.669 40 H 0.218 0.782 41 H 0.181 0.819 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.058 -5.297 -13.238 18.044 hybrid contribution -2.882 -0.698 1.635 3.387 sum 8.176 -5.995 -11.603 15.408 Atomic orbital electron populations 1.22242 0.94021 1.01331 1.03694 1.20720 0.95358 0.95470 0.83419 1.22371 1.02674 0.92519 1.04292 1.24704 1.04046 0.97772 0.97860 1.85805 1.62403 1.40994 0.91766 1.24165 1.02593 0.87385 0.97986 1.68398 1.28488 1.18661 0.96217 1.34079 0.96042 1.37633 1.09179 1.16375 0.94051 0.96489 0.88392 1.21202 0.99406 1.01020 1.19425 1.21221 0.92528 0.96760 0.89891 1.21085 1.00837 0.95355 1.08926 1.21292 0.91880 0.98566 0.94141 1.20874 0.98693 1.02402 1.06800 1.46395 1.45275 1.27667 1.07457 1.25132 0.77998 0.86303 0.85526 1.90371 1.39370 1.26421 1.86528 1.28458 1.17775 0.85307 0.91188 1.95096 1.64837 1.84684 1.38343 0.77249 0.54144 0.74449 1.04714 1.19182 1.13145 0.85251 1.28303 0.90319 1.02171 1.19166 1.21978 1.05577 0.88084 0.86507 1.21097 0.93853 0.99556 1.01958 1.26491 0.99262 0.96527 1.14133 1.96571 1.79144 1.18371 1.95777 1.84755 1.15076 0.98806 1.73810 0.94649 0.86861 0.94285 0.90027 0.87466 0.93334 0.85037 0.82242 0.73067 0.66890 0.78163 0.81879 0.83816 0.84644 0.86841 0.72271 0.81077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 108. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 8.01 71.98 0.58 -4.60 16 2 C 0.14 4.19 1.02 4.05 0.00 4.20 16 3 C -0.16 -4.33 8.00 71.98 0.58 -3.75 16 4 C -0.10 -1.96 6.59 72.06 0.48 -1.48 16 5 S -0.04 -1.16 23.23 -56.49 -1.31 -2.48 16 6 C 0.24 9.06 7.15 179.81 1.29 10.35 16 7 N -0.40 -15.76 5.55 ******* -20.60 -36.35 16 8 C -0.66 -27.90 0.01 -27.32 0.00 -27.90 16 9 C 0.05 1.78 2.26 -19.87 -0.04 1.73 16 10 C -0.40 -11.00 6.07 22.27 0.14 -10.86 16 11 C 0.01 0.30 10.05 22.27 0.22 0.52 16 12 C -0.24 -5.45 10.05 22.27 0.22 -5.23 16 13 C -0.04 -1.07 10.05 22.27 0.22 -0.84 16 14 C -0.27 -8.80 7.84 22.27 0.17 -8.62 16 15 N -0.54 -21.74 2.47 -599.72 -1.48 -23.22 16 16 C 0.46 24.19 5.17 87.66 0.45 24.64 16 17 O -0.55 -32.77 12.83 15.32 0.20 -32.57 16 18 C -0.16 -9.10 0.72 -6.38 0.00 -9.10 16 19 O -0.88 -65.53 17.21 -130.71 -2.25 -67.78 16 20 Si 1.03 43.78 15.26 68.60 1.05 44.83 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.16 -6.63 3.22 7.67 0.02 -6.60 16 23 H 0.10 3.02 2.86 11.86 0.03 3.05 16 24 C -0.27 -13.94 2.74 -10.50 -0.03 -13.96 16 25 C 0.04 1.48 2.73 -6.39 -0.02 1.47 16 26 C -0.13 -4.94 9.97 21.24 0.21 -4.73 16 27 C -0.17 -6.81 6.97 66.74 0.47 -6.34 16 28 Br 0.02 0.57 34.07 -20.37 -0.69 -0.13 16 29 S 0.01 0.59 23.27 -56.49 -1.31 -0.72 16 30 H 0.03 1.52 6.27 -2.38 -0.01 1.51 16 31 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.05 1.76 5.98 -2.39 -0.01 1.74 16 36 H 0.13 2.17 7.63 -2.39 -0.02 2.16 16 37 H 0.16 1.99 7.63 -2.38 -0.02 1.97 16 38 H 0.26 12.90 1.78 -219.47 -0.39 12.51 16 39 H 0.32 14.80 0.00 0.00 0.00 14.80 16 40 H 0.20 4.78 4.75 -2.91 -0.01 4.77 16 41 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.11 3.84 6.68 -2.91 -0.02 3.82 16 45 H 0.27 10.07 0.85 -266.68 -0.23 9.84 16 46 H 0.17 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -92.47 358.86 -21.60 -114.07 By element: Atomic # 1 Polarization: 59.00 SS G_CDS: -0.12 Total: 58.88 kcal Atomic # 6 Polarization: -59.46 SS G_CDS: 4.93 Total: -54.53 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -22.08 Total: -59.57 kcal Atomic # 8 Polarization: -98.30 SS G_CDS: -2.05 Total: -100.35 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.05 Total: 44.83 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.63 Total: -3.20 kcal Atomic # 35 Polarization: 0.57 SS G_CDS: -0.69 Total: -0.13 kcal Total: -92.47 -21.60 -114.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348945769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1296.353 kcal (2) G-P(sol) polarization free energy of solvation -92.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1203.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -21.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 1182.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds