Wall clock time and date at job start Tue Mar 24 2020 14:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 N 1.34777 * 119.99750 * 2 1 4 4 C 1.46499 * 120.00199 * 359.97438 * 3 2 1 5 5 C 1.50694 * 109.47550 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00266 * 270.27778 * 5 4 3 7 7 C 1.38237 * 120.00081 * 179.97438 * 6 5 4 8 8 C 1.38232 * 119.99912 * 359.97298 * 7 6 5 9 Xx 1.80997 * 119.99771 * 179.97438 * 8 7 6 10 9 F 9.64360 * 120.80610 * 359.97438 * 2 1 3 11 10 F 1.61002 * 90.00152 * 135.00546 * 9 8 7 12 11 F 1.60994 * 90.00349 * 315.00321 * 9 8 7 13 12 F 1.61003 * 90.00390 * 225.00361 * 9 8 7 14 13 F 1.61004 * 90.00112 * 45.00385 * 9 8 7 15 14 C 1.38228 * 120.00415 * 359.96220 * 8 7 6 16 15 C 1.38240 * 119.99962 * 89.99778 * 5 4 3 17 16 C 1.50702 * 120.00262 * 179.71906 * 2 1 3 18 17 O 1.42899 * 109.46876 * 0.02562 * 17 2 1 19 18 Si 1.86302 * 109.46948 * 120.00004 * 17 2 1 20 19 H 1.48511 * 109.46847 * 60.00274 * 19 17 2 21 20 H 1.48495 * 109.47275 * 179.97438 * 19 17 2 22 21 H 1.48495 * 109.47558 * 300.00269 * 19 17 2 23 22 C 1.50700 * 109.47207 * 240.00253 * 17 2 1 24 23 C 1.34237 * 126.49781 * 0.31286 * 23 17 2 25 24 N 1.36830 * 109.93003 * 180.02562 * 24 23 17 26 25 H 0.96998 * 125.06539 * 180.02562 * 25 24 23 27 26 C 1.37720 * 109.86926 * 359.97438 * 25 24 23 28 27 C 1.39125 * 133.49754 * 180.02562 * 27 25 24 29 28 C 1.37737 * 119.79299 * 179.97438 * 28 27 25 30 29 C 1.38910 * 120.65707 * 0.02562 * 29 28 27 31 30 Br 1.89101 * 119.74713 * 180.02562 * 30 29 28 32 31 C 1.36693 * 120.50819 * 0.02562 * 30 29 28 33 32 C 1.39640 * 119.75706 * 359.69542 * 32 30 29 34 33 H 0.97000 * 120.00317 * 180.02562 * 3 2 1 35 34 H 1.08998 * 109.47134 * 300.00670 * 4 3 2 36 35 H 1.09002 * 109.46857 * 59.99862 * 4 3 2 37 36 H 1.07999 * 119.99489 * 359.97394 * 6 5 4 38 37 H 1.08002 * 119.99773 * 179.97438 * 7 6 5 39 38 H 1.08003 * 120.00580 * 180.02562 * 15 8 7 40 39 H 1.08003 * 119.99948 * 0.21941 * 16 5 4 41 40 H 1.07998 * 125.03541 * 359.97431 * 24 23 17 42 41 H 1.07995 * 120.09935 * 359.95853 * 28 27 25 43 42 H 1.07998 * 119.67408 * 179.97438 * 29 28 27 44 43 H 1.08005 * 120.12450 * 179.97438 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8867 1.1672 0.0000 4 6 1.1542 2.4359 -0.0006 5 6 2.1333 3.5814 -0.0011 6 6 2.5869 4.1036 1.1958 7 6 3.4855 5.1541 1.1953 8 6 3.9310 5.6819 -0.0021 9 9 6.1516 8.2829 -0.0037 10 9 5.9689 6.3205 -1.1454 11 9 4.2452 7.7951 1.1399 12 9 4.2383 7.8000 -1.1370 13 9 5.9759 6.3156 1.1315 14 6 3.4785 5.1589 -1.1990 15 6 2.5825 4.1062 -1.1985 16 6 1.9664 -1.3051 0.0064 17 8 1.0378 -2.3912 0.0111 18 14 3.0375 -1.4111 -1.5143 19 1 4.0025 -0.2823 -1.5197 20 1 3.7805 -2.6968 -1.5077 21 1 2.1838 -1.3384 -2.7271 22 6 2.8328 -1.3789 1.2373 23 6 2.9344 -0.4480 2.1991 24 7 3.8180 -0.8627 3.1580 25 1 4.0556 -0.3589 3.9521 26 6 4.3188 -2.1025 2.8283 27 6 5.2271 -2.9617 3.4386 28 6 5.5322 -4.1675 2.8470 29 6 4.9422 -4.5360 1.6446 30 35 5.3793 -6.1979 0.8554 31 6 4.0480 -3.7065 1.0275 32 6 3.7202 -2.4820 1.6132 33 1 2.8567 1.1673 -0.0004 34 1 0.5278 2.4934 -0.8907 35 1 0.5271 2.4938 0.8892 36 1 2.2391 3.6909 2.1312 37 1 3.8395 5.5623 2.1304 38 1 3.8269 5.5711 -2.1345 39 1 2.2289 3.6976 -2.1336 40 1 2.3987 0.4897 2.2135 41 1 5.6916 -2.6838 4.3731 42 1 6.2379 -4.8328 3.3222 43 1 3.5933 -3.9990 0.0925 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184485327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:30:36 Heat of formation + Delta-G solvation = 379.447304 kcal Electronic energy + Delta-G solvation = -39777.308573 eV Core-core repulsion = 33504.377999 eV Total energy + Delta-G solvation = -6272.930574 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 481.010 amu Computer time = 46.46 seconds Orbital eigenvalues (eV) -43.16125 -43.00455 -42.96253 -42.85894 -42.54257 -40.91149 -40.69509 -38.58206 -36.66035 -34.78823 -32.94804 -32.40833 -31.60452 -31.19775 -30.26640 -28.24288 -27.91946 -26.59052 -23.97132 -23.77993 -22.47677 -21.99667 -21.26447 -20.29968 -18.78319 -17.63014 -17.09947 -16.66801 -15.96284 -15.87561 -15.69702 -15.31605 -15.16261 -14.81417 -14.44313 -14.34358 -14.12597 -13.95662 -13.88669 -13.79392 -13.55736 -13.53615 -13.45074 -13.23278 -13.04283 -12.94284 -12.92896 -12.81035 -12.70031 -12.57482 -12.53483 -12.38125 -12.35022 -12.26002 -12.11426 -12.03659 -11.52122 -11.25908 -11.19650 -10.82764 -10.76589 -10.66200 -10.33155 -10.31050 -10.16304 -10.15571 -10.13274 -10.03677 -9.92399 -8.98022 -8.87231 -8.63180 -7.77554 -7.09602 -6.14440 -5.62956 -4.08753 -3.58294 -2.52215 -0.22660 0.01863 1.47170 1.75066 2.05048 2.32348 3.06846 3.16067 3.21075 3.28071 3.35381 3.51705 3.53584 3.66402 3.70059 3.88598 3.99547 4.05105 4.16648 4.42524 4.52385 4.84444 4.91859 4.95090 5.01843 5.10276 5.24146 5.35473 5.39156 5.56896 5.62497 5.69161 5.73720 5.92423 6.09371 6.27731 6.34187 6.63459 6.68986 6.83777 6.86748 7.07374 7.33957 7.52989 7.93988 8.10902 9.09658 9.77260 Molecular weight = 481.01amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.001442 C = 0.001350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.086513 B =19415.278040 C =20736.727552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.524 6.524 2 C 0.489 3.511 3 N -0.754 5.754 4 C 0.150 3.850 5 C -0.076 4.076 6 C -0.049 4.049 7 C -0.109 4.109 8 C 0.366 3.634 9 F -0.142 7.142 10 F -0.162 7.162 11 F -0.171 7.171 12 F -0.171 7.171 13 F -0.164 7.164 14 C -0.108 4.108 15 C -0.047 4.047 16 C 0.061 3.939 17 O -0.797 6.797 18 Si 0.917 3.083 19 H -0.295 1.295 20 H -0.262 1.262 21 H -0.275 1.275 22 C -0.109 4.109 23 C -0.002 4.002 24 N -0.597 5.597 25 H 0.408 0.592 26 C 0.107 3.893 27 C -0.135 4.135 28 C -0.078 4.078 29 C -0.132 4.132 30 Br -0.073 7.073 31 C -0.012 4.012 32 C -0.088 4.088 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 5.626 4.160 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.397 6.397 2 C 0.279 3.721 3 N -0.416 5.416 4 C 0.026 3.974 5 C -0.076 4.076 6 C -0.067 4.067 7 C -0.126 4.126 8 C 0.360 3.640 9 F -0.142 7.142 10 F -0.160 7.160 11 F -0.169 7.169 12 F -0.169 7.169 13 F -0.163 7.163 14 C -0.126 4.126 15 C -0.065 4.065 16 C -0.043 4.043 17 O -0.739 6.739 18 Si 0.744 3.256 19 H -0.224 1.224 20 H -0.186 1.186 21 H -0.200 1.200 22 C -0.116 4.116 23 C -0.124 4.124 24 N -0.201 5.201 25 H 0.244 0.756 26 C -0.003 4.003 27 C -0.157 4.157 28 C -0.099 4.099 29 C -0.212 4.212 30 Br 0.012 6.988 31 C -0.032 4.032 32 C -0.095 4.095 33 H 0.231 0.769 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.181 0.819 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.214 4.719 3.214 7.732 hybrid contribution 1.325 2.043 0.851 2.580 sum 6.540 6.762 4.065 10.248 Atomic orbital electron populations 1.90492 1.14902 1.86840 1.47433 1.24378 0.89992 0.85093 0.72666 1.47129 1.10245 1.04214 1.80041 1.20209 0.91851 0.80800 1.04503 1.20805 0.97061 0.97182 0.92565 1.21407 0.93155 0.91517 1.00616 1.21766 0.96936 0.95476 0.98441 1.26893 0.77187 0.64899 0.94989 2.00000 1.99490 1.99265 1.15486 1.99921 1.97142 1.92654 1.26308 1.99919 1.89379 1.97713 1.29908 1.99920 1.91775 1.97454 1.27755 1.99920 1.97647 1.89565 1.29120 1.21805 0.96745 0.95408 0.98626 1.21476 0.93057 0.91212 1.00785 1.21915 0.96077 0.91518 0.94792 1.95146 1.51790 1.36331 1.90673 0.86815 0.76811 0.79247 0.82772 1.22380 1.18638 1.20013 1.21956 0.97946 0.91402 1.00311 1.21637 0.98497 1.01254 0.91015 1.41663 1.39580 1.16075 1.22762 0.75592 1.18327 0.98229 0.87409 0.96300 1.19799 1.00780 0.94200 1.00911 1.20530 0.99543 0.95971 0.93866 1.20981 1.06433 0.94157 0.99617 1.96569 1.93439 1.25987 1.82848 1.20507 0.92513 0.91110 0.99073 1.18943 0.99851 0.95489 0.95194 0.76863 0.89776 0.89768 0.80376 0.80386 0.80246 0.80237 0.81921 0.86068 0.85501 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 608. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -13.22 16.50 -14.35 -0.24 -13.45 16 2 C 0.49 10.32 5.26 -10.98 -0.06 10.26 16 3 N -0.75 -10.30 3.82 -61.47 -0.23 -10.53 16 4 C 0.15 1.34 5.80 -5.20 -0.03 1.31 16 5 C -0.08 -0.41 5.25 -104.62 -0.55 -0.96 16 6 C -0.05 -0.20 9.70 -39.58 -0.38 -0.58 16 7 C -0.11 -0.61 8.62 -39.58 -0.34 -0.95 16 8 C 0.37 3.08 4.82 -39.59 -0.19 2.89 16 9 F -0.14 -2.63 16.66 2.25 0.04 -2.60 16 10 F -0.16 -2.44 15.31 2.25 0.03 -2.40 16 11 F -0.17 -2.50 15.31 2.25 0.03 -2.46 16 12 F -0.17 -2.52 15.31 2.25 0.03 -2.48 16 13 F -0.16 -2.44 15.32 2.25 0.03 -2.41 16 14 C -0.11 -0.65 8.62 -39.58 -0.34 -0.99 16 15 C -0.05 -0.22 9.70 -39.58 -0.38 -0.60 16 16 C 0.06 1.48 0.79 -29.03 -0.02 1.46 16 17 O -0.80 -25.55 17.19 -55.14 -0.95 -26.50 16 18 Si 0.92 19.82 25.01 -169.99 -4.25 15.57 16 19 H -0.29 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.26 -5.78 5.95 56.52 0.34 -5.44 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 C -0.11 -2.27 4.53 -102.71 -0.47 -2.74 16 23 C 0.00 -0.03 10.34 -16.73 -0.17 -0.20 16 24 N -0.60 -8.13 6.07 -10.64 -0.06 -8.20 16 25 H 0.41 3.78 8.96 -40.82 -0.37 3.42 16 26 C 0.11 1.74 7.28 -83.97 -0.61 1.13 16 27 C -0.14 -1.87 10.08 -39.44 -0.40 -2.27 16 28 C -0.08 -1.13 9.75 -39.52 -0.39 -1.51 16 29 C -0.13 -2.24 6.18 -39.89 -0.25 -2.49 16 30 Br -0.07 -1.10 33.67 -68.01 -2.29 -3.39 16 31 C -0.01 -0.24 8.98 -39.62 -0.36 -0.60 16 32 C -0.09 -1.80 5.86 -105.14 -0.62 -2.41 16 33 H 0.40 4.75 7.24 -40.82 -0.30 4.45 16 34 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.18 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.18 0.87 7.40 -52.49 -0.39 0.48 16 38 H 0.18 0.96 7.40 -52.48 -0.39 0.57 16 39 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.16 2.12 6.64 -52.49 -0.35 1.77 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.14 3.04 6.69 -52.48 -0.35 2.69 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -41.46 414.61 -10.68 -52.14 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.53 Total: -0.29 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -5.55 Total: 0.76 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: -0.30 Total: -18.73 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.18 Total: -39.95 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 0.18 Total: -12.35 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.25 Total: 15.57 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.29 Total: -3.39 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -41.46 -10.68 -52.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184485327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 431.585 kcal (2) G-P(sol) polarization free energy of solvation -41.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 390.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 379.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 46.46 seconds