Wall clock time and date at job start Tue Mar 24 2020 14:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 N 1.34777 * 119.99750 * 2 1 4 4 C 1.46499 * 120.00199 * 359.97438 * 3 2 1 5 5 C 1.50694 * 109.47550 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00266 * 270.27778 * 5 4 3 7 7 C 1.38237 * 120.00081 * 179.97438 * 6 5 4 8 8 C 1.38232 * 119.99912 * 359.97298 * 7 6 5 9 Xx 1.80997 * 119.99771 * 179.97438 * 8 7 6 10 9 F 9.64360 * 120.80610 * 359.97438 * 2 1 3 11 10 F 1.61002 * 90.00152 * 135.00546 * 9 8 7 12 11 F 1.60994 * 90.00349 * 315.00321 * 9 8 7 13 12 F 1.61003 * 90.00390 * 225.00361 * 9 8 7 14 13 F 1.61004 * 90.00112 * 45.00385 * 9 8 7 15 14 C 1.38228 * 120.00415 * 359.96220 * 8 7 6 16 15 C 1.38240 * 119.99962 * 89.99778 * 5 4 3 17 16 C 1.50702 * 120.00262 * 179.71906 * 2 1 3 18 17 O 1.42899 * 109.46876 * 0.02562 * 17 2 1 19 18 Si 1.86302 * 109.46948 * 120.00004 * 17 2 1 20 19 H 1.48511 * 109.46847 * 60.00274 * 19 17 2 21 20 H 1.48495 * 109.47275 * 179.97438 * 19 17 2 22 21 H 1.48495 * 109.47558 * 300.00269 * 19 17 2 23 22 C 1.50700 * 109.47207 * 240.00253 * 17 2 1 24 23 C 1.34237 * 126.49781 * 0.31286 * 23 17 2 25 24 N 1.36830 * 109.93003 * 180.02562 * 24 23 17 26 25 H 0.96998 * 125.06539 * 180.02562 * 25 24 23 27 26 C 1.37720 * 109.86926 * 359.97438 * 25 24 23 28 27 C 1.39125 * 133.49754 * 180.02562 * 27 25 24 29 28 C 1.37737 * 119.79299 * 179.97438 * 28 27 25 30 29 C 1.38910 * 120.65707 * 0.02562 * 29 28 27 31 30 Br 1.89101 * 119.74713 * 180.02562 * 30 29 28 32 31 C 1.36693 * 120.50819 * 0.02562 * 30 29 28 33 32 C 1.39640 * 119.75706 * 359.69542 * 32 30 29 34 33 H 0.97000 * 120.00317 * 180.02562 * 3 2 1 35 34 H 1.08998 * 109.47134 * 300.00670 * 4 3 2 36 35 H 1.09002 * 109.46857 * 59.99862 * 4 3 2 37 36 H 1.07999 * 119.99489 * 359.97394 * 6 5 4 38 37 H 1.08002 * 119.99773 * 179.97438 * 7 6 5 39 38 H 1.08003 * 120.00580 * 180.02562 * 15 8 7 40 39 H 1.08003 * 119.99948 * 0.21941 * 16 5 4 41 40 H 1.07998 * 125.03541 * 359.97431 * 24 23 17 42 41 H 1.07995 * 120.09935 * 359.95853 * 28 27 25 43 42 H 1.07998 * 119.67408 * 179.97438 * 29 28 27 44 43 H 1.08005 * 120.12450 * 179.97438 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8867 1.1672 0.0000 4 6 1.1542 2.4359 -0.0006 5 6 2.1333 3.5814 -0.0011 6 6 2.5869 4.1036 1.1958 7 6 3.4855 5.1541 1.1953 8 6 3.9310 5.6819 -0.0021 9 9 6.1516 8.2829 -0.0037 10 9 5.9689 6.3205 -1.1454 11 9 4.2452 7.7951 1.1399 12 9 4.2383 7.8000 -1.1370 13 9 5.9759 6.3156 1.1315 14 6 3.4785 5.1589 -1.1990 15 6 2.5825 4.1062 -1.1985 16 6 1.9664 -1.3051 0.0064 17 8 1.0378 -2.3912 0.0111 18 14 3.0375 -1.4111 -1.5143 19 1 4.0025 -0.2823 -1.5197 20 1 3.7805 -2.6968 -1.5077 21 1 2.1838 -1.3384 -2.7271 22 6 2.8328 -1.3789 1.2373 23 6 2.9344 -0.4480 2.1991 24 7 3.8180 -0.8627 3.1580 25 1 4.0556 -0.3589 3.9521 26 6 4.3188 -2.1025 2.8283 27 6 5.2271 -2.9617 3.4386 28 6 5.5322 -4.1675 2.8470 29 6 4.9422 -4.5360 1.6446 30 35 5.3793 -6.1979 0.8554 31 6 4.0480 -3.7065 1.0275 32 6 3.7202 -2.4820 1.6132 33 1 2.8567 1.1673 -0.0004 34 1 0.5278 2.4934 -0.8907 35 1 0.5271 2.4938 0.8892 36 1 2.2391 3.6909 2.1312 37 1 3.8395 5.5623 2.1304 38 1 3.8269 5.5711 -2.1345 39 1 2.2289 3.6976 -2.1336 40 1 2.3987 0.4897 2.2135 41 1 5.6916 -2.6838 4.3731 42 1 6.2379 -4.8328 3.3222 43 1 3.5933 -3.9990 0.0925 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184485327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:30:11 Heat of formation + Delta-G solvation = 329.219371 kcal Electronic energy + Delta-G solvation = -39779.486620 eV Core-core repulsion = 33504.377999 eV Total energy + Delta-G solvation = -6275.108621 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 481.010 amu Computer time = 24.65 seconds Orbital eigenvalues (eV) -43.63006 -41.93273 -41.04570 -40.56441 -40.01329 -39.96734 -39.92399 -39.90171 -38.86380 -37.63978 -36.71759 -34.07786 -32.95617 -32.76019 -32.23380 -31.22836 -29.91942 -28.60679 -26.41365 -24.59696 -23.74074 -23.65583 -22.99328 -22.29226 -21.41845 -19.86402 -19.22588 -18.44601 -18.12720 -17.52080 -17.14279 -16.86329 -16.77628 -16.43710 -16.18948 -16.00035 -15.86766 -15.66955 -15.60531 -15.36560 -14.71808 -14.58695 -14.42215 -13.99976 -13.92044 -13.81021 -13.33750 -13.30687 -13.23643 -12.79224 -12.60077 -12.50740 -12.21392 -11.77188 -11.73817 -11.72494 -11.55243 -11.43189 -11.36047 -10.92844 -10.87196 -10.70826 -10.69889 -10.58894 -10.28453 -10.26326 -9.93748 -9.84218 -9.82582 -9.64463 -9.49116 -9.45225 -9.20434 -9.17053 -9.12293 -8.11649 -4.61636 -2.63438 -0.78131 -0.71236 -0.57380 -0.18694 -0.03691 0.15739 0.40399 0.46117 0.53611 0.99629 1.08616 1.13491 1.20005 1.38227 2.14628 2.17160 2.32804 2.60646 2.79317 2.99814 3.15647 3.35425 3.40961 3.63192 3.68624 3.75301 3.76709 3.82624 3.99986 4.04666 4.09029 4.31400 4.45353 4.49820 4.60432 4.61358 4.69214 4.82328 4.87785 4.88959 4.90194 5.07544 5.22768 5.28634 5.63939 5.66469 5.73088 5.79187 6.19800 Molecular weight = 481.01amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.001442 C = 0.001350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.086513 B =19415.278040 C =20736.727552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.450 6.450 2 C 0.555 3.445 3 N -0.688 5.688 4 C 0.182 3.818 5 C -0.125 4.125 6 C -0.023 4.023 7 C -0.171 4.171 8 C 0.445 3.555 9 F -0.361 7.361 10 F -0.585 7.585 11 F -0.588 7.588 12 F -0.593 7.593 13 F -0.581 7.581 14 C -0.175 4.175 15 C -0.028 4.028 16 C -0.031 4.031 17 O -0.235 6.235 18 Si 1.088 2.912 19 H -0.120 1.120 20 H -0.180 1.180 21 H -0.180 1.180 22 C -0.168 4.168 23 C 0.231 3.769 24 N -0.485 5.485 25 H 0.465 0.535 26 C 0.089 3.911 27 C -0.064 4.064 28 C -0.061 4.061 29 C -0.093 4.093 30 Br -0.036 7.036 31 C -0.041 4.041 32 C -0.108 4.108 33 H 0.429 0.571 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.225 0.775 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.212 0.788 40 H 0.246 0.754 41 H 0.180 0.820 42 H 0.167 0.833 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -74.772 9.196 77.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.320 6.320 2 C 0.332 3.668 3 N -0.346 5.346 4 C 0.063 3.937 5 C -0.126 4.126 6 C -0.040 4.040 7 C -0.189 4.189 8 C 0.436 3.564 9 F -0.361 7.361 10 F -0.583 7.583 11 F -0.586 7.586 12 F -0.590 7.590 13 F -0.579 7.579 14 C -0.193 4.193 15 C -0.045 4.045 16 C -0.121 4.121 17 O -0.147 6.147 18 Si 0.865 3.135 19 H -0.042 1.042 20 H -0.100 1.100 21 H -0.100 1.100 22 C -0.178 4.178 23 C 0.081 3.919 24 N -0.093 5.093 25 H 0.312 0.688 26 C -0.014 4.014 27 C -0.084 4.084 28 C -0.081 4.081 29 C -0.173 4.173 30 Br 0.051 6.949 31 C -0.062 4.062 32 C -0.112 4.112 33 H 0.270 0.730 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.242 0.758 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.229 0.771 40 H 0.262 0.738 41 H 0.197 0.803 42 H 0.184 0.816 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.116 -75.825 8.431 78.900 hybrid contribution 1.864 2.714 1.070 3.462 sum -18.252 -73.111 9.501 75.951 Atomic orbital electron populations 1.91019 1.12307 1.79776 1.48895 1.18865 0.86721 0.81641 0.79621 1.46530 1.13023 1.03681 1.71321 1.20667 0.90035 0.73856 1.09129 1.20057 1.01056 1.00594 0.90887 1.21618 0.90382 0.89547 1.02447 1.21832 1.00977 0.99491 0.96629 1.25438 0.71876 0.62422 0.96615 2.00000 1.63288 1.72816 1.99998 1.99877 1.89865 1.73879 1.94649 1.99879 1.71224 1.93017 1.94444 1.99880 1.71361 1.92904 1.94864 1.99876 1.89745 1.73665 1.94614 1.21806 1.01040 0.99591 0.96905 1.21593 0.90669 0.89520 1.02736 1.27603 0.90283 0.95046 0.99145 1.95236 1.22733 1.40721 1.56021 0.87979 0.73826 0.91265 0.60446 1.04154 1.10019 1.10003 1.20453 1.07085 0.97993 0.92268 1.23579 0.85830 0.97291 0.85195 1.42762 1.29312 1.14851 1.22331 0.68793 1.18480 0.99693 0.87499 0.95751 1.20756 0.95034 0.91290 1.01308 1.21448 0.97782 0.96398 0.92484 1.21677 1.02066 0.94786 0.98784 1.96935 1.92920 1.23365 1.81730 1.20630 0.94740 0.90622 1.00163 1.18681 1.00283 0.95269 0.96986 0.73033 0.85282 0.84224 0.75821 0.86510 0.87101 0.77078 0.73782 0.80297 0.81571 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 320. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.45 0.47 16.50 16.00 0.26 0.73 16 2 C 0.56 -4.97 5.26 87.66 0.46 -4.51 16 3 N -0.69 7.34 3.82 -466.79 -1.78 5.55 16 4 C 0.18 -0.93 5.80 85.63 0.50 -0.43 16 5 C -0.13 -1.49 5.25 -19.87 -0.10 -1.60 16 6 C -0.02 -0.47 9.70 22.27 0.22 -0.25 16 7 C -0.17 -8.88 8.62 22.27 0.19 -8.69 16 8 C 0.45 32.18 4.82 22.27 0.11 32.28 16 9 F -0.36 -44.55 16.66 44.97 0.75 -43.80 16 10 F -0.59 -64.29 15.31 44.97 0.69 -63.60 16 11 F -0.59 -65.52 15.31 44.97 0.69 -64.83 16 12 F -0.59 -66.65 15.31 44.97 0.69 -65.96 16 13 F -0.58 -63.11 15.32 44.97 0.69 -62.42 16 14 C -0.18 -9.51 8.62 22.27 0.19 -9.32 16 15 C -0.03 -0.66 9.70 22.27 0.22 -0.44 16 16 C -0.03 0.32 0.79 29.10 0.02 0.34 16 17 O -0.23 0.87 17.19 -129.94 -2.23 -1.36 16 18 Si 1.09 -14.80 25.01 68.60 1.72 -13.08 16 19 H -0.12 2.10 7.11 99.48 0.71 2.81 16 20 H -0.18 2.72 5.95 99.48 0.59 3.32 16 21 H -0.18 2.38 7.11 99.48 0.71 3.09 16 22 C -0.17 2.11 4.53 -18.63 -0.08 2.02 16 23 C 0.23 -3.88 10.34 83.00 0.86 -3.02 16 24 N -0.48 8.04 6.07 -187.59 -1.14 6.90 16 25 H 0.47 -9.88 8.96 -92.71 -0.83 -10.71 16 26 C 0.09 -1.03 7.28 39.02 0.28 -0.75 16 27 C -0.06 0.73 10.08 22.36 0.23 0.96 16 28 C -0.06 0.50 9.75 22.31 0.22 0.71 16 29 C -0.09 0.48 6.18 22.07 0.14 0.61 16 30 Br -0.04 0.05 33.67 -20.37 -0.69 -0.64 16 31 C -0.04 0.29 8.98 22.25 0.20 0.49 16 32 C -0.11 1.04 5.86 -20.20 -0.12 0.92 16 33 H 0.43 -6.14 7.24 -92.71 -0.67 -6.81 16 34 H 0.13 -0.93 8.08 -2.39 -0.02 -0.95 16 35 H 0.14 -1.43 8.09 -2.39 -0.02 -1.45 16 36 H 0.23 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.12 7.19 7.40 -2.91 -0.02 7.17 16 38 H 0.11 7.22 7.40 -2.91 -0.02 7.20 16 39 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.25 -5.59 6.64 -2.91 -0.02 -5.61 16 41 H 0.18 -2.91 8.06 -2.91 -0.02 -2.94 16 42 H 0.17 -1.73 8.06 -2.91 -0.02 -1.75 16 43 H 0.15 -1.37 6.69 -2.91 -0.02 -1.39 16 Total: -1.00 -301.90 414.61 3.45 -298.45 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 0.29 Total: -5.25 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.52 Total: 9.32 kcal Atomic # 7 Polarization: 15.37 SS G_CDS: -2.92 Total: 12.45 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: -1.97 Total: -0.63 kcal Atomic # 9 Polarization: -304.12 SS G_CDS: 3.50 Total: -300.62 kcal Atomic # 14 Polarization: -14.80 SS G_CDS: 1.72 Total: -13.08 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -301.90 3.45 -298.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184485327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 627.667 kcal (2) G-P(sol) polarization free energy of solvation -301.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 325.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -298.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 329.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.66 seconds