Wall clock time and date at job start Tue Mar 24 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00255 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.46957 * 209.99840 * 6 5 4 8 8 Si 1.86299 * 109.46895 * 329.99407 * 6 5 4 9 9 H 1.48499 * 109.47005 * 60.00303 * 8 6 5 10 10 H 1.48498 * 109.47180 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47256 * 300.00363 * 8 6 5 12 12 C 1.50698 * 109.47288 * 89.99435 * 6 5 4 13 13 O 1.21284 * 119.99829 * 125.00150 * 12 6 5 14 14 N 1.34774 * 120.00292 * 304.99839 * 12 6 5 15 15 C 1.46495 * 119.99979 * 179.97438 * 14 12 6 16 16 C 1.50702 * 109.46858 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99740 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99665 * 179.97438 * 18 16 15 20 20 C 1.47205 * 109.46955 * 179.97438 * 19 18 16 21 21 N 9.57825 * 110.29477 * 261.73675 * 4 1 2 22 22 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 23 23 C 1.38234 * 120.00048 * 0.02876 * 22 5 4 24 24 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 25 25 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 26 26 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 27 27 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 0.97003 * 119.99617 * 0.02562 * 14 12 6 30 30 H 1.08998 * 109.47238 * 300.00095 * 15 14 12 31 31 H 1.08997 * 109.46996 * 60.00728 * 15 14 12 32 32 H 0.96997 * 120.00512 * 0.02562 * 18 16 15 33 33 H 1.08998 * 109.47075 * 299.99621 * 19 18 16 34 34 H 1.08997 * 109.46996 * 60.00154 * 19 18 16 35 35 H 1.08001 * 119.99657 * 180.02562 * 22 5 4 36 36 H 1.08004 * 119.99527 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 8 6.2575 -1.1653 -0.6633 8 14 6.4029 1.5230 -0.8612 9 1 5.9053 2.7339 -0.1602 10 1 7.8879 1.5227 -0.8561 11 1 5.9132 1.5263 -2.2631 12 6 6.2756 -0.0034 1.4339 13 8 7.0444 -0.8646 1.8057 14 7 5.8660 0.9508 2.2931 15 6 6.3487 0.9472 3.6762 16 6 5.7447 2.1091 4.4220 17 8 4.9861 2.8659 3.8540 18 7 6.0483 2.3078 5.7200 19 6 5.4616 3.4377 6.4449 20 6 5.9465 3.4341 7.8347 21 7 6.3218 3.4322 8.9070 22 6 3.5805 -1.1972 0.0006 23 6 2.1981 -1.1972 -0.0046 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 4.1205 2.1324 0.0100 29 1 5.2509 1.6394 1.9958 30 1 6.0581 0.0148 4.1601 31 1 7.4350 1.0365 3.6821 32 1 6.6559 1.7032 6.1741 33 1 5.7519 4.3701 5.9608 34 1 4.3753 3.3482 6.4393 35 1 4.1205 -2.1325 0.0009 36 1 1.6582 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353256704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:01:23 Heat of formation + Delta-G solvation = -73.615191 kcal Electronic energy + Delta-G solvation = -22436.265211 eV Core-core repulsion = 18885.969530 eV Total energy + Delta-G solvation = -3550.295682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09428 -38.82344 -37.80726 -37.17819 -34.84063 -33.54452 -33.15110 -30.25772 -30.01268 -29.40954 -26.99387 -26.03231 -23.05121 -21.77889 -20.91142 -20.25481 -19.25179 -18.62953 -16.82562 -16.38728 -16.17804 -15.52267 -15.12204 -14.98132 -14.77070 -14.65452 -14.15307 -13.66865 -13.49952 -13.30722 -13.27934 -13.06150 -12.87787 -12.63493 -12.50433 -12.32921 -12.10950 -11.87772 -11.57765 -11.15356 -10.45770 -10.32519 -10.25045 -10.11080 -9.80113 -9.58084 -9.47987 -8.84286 -8.27087 -8.05983 -7.51805 -5.98065 -5.45570 1.86608 2.19013 2.24690 2.29782 2.43370 3.01230 3.27362 3.37250 3.42547 3.44381 3.89599 4.18103 4.54045 4.58168 4.76595 4.91002 5.05517 5.46373 5.49696 5.58698 5.60446 5.78032 5.85987 5.87481 5.92807 6.14966 6.24538 6.43613 6.59544 6.77014 6.91122 6.93886 6.99534 7.02522 7.29909 7.32307 7.43821 7.77124 7.89812 7.97164 8.49724 9.38652 9.96719 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004949 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.988169 B = 5656.144892 C = 6686.639516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.151 4.151 5 C -0.062 4.062 6 C 0.026 3.974 7 O -0.810 6.810 8 Si 0.930 3.070 9 H -0.291 1.291 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.494 3.506 13 O -0.536 6.536 14 N -0.739 5.739 15 C 0.099 3.901 16 C 0.518 3.482 17 O -0.522 6.522 18 N -0.733 5.733 19 C 0.219 3.781 20 C 0.196 3.804 21 N -0.409 5.409 22 C -0.079 4.079 23 C -0.130 4.130 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.405 0.595 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 8.460 9.694 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.140 4.140 4 C -0.169 4.169 5 C -0.063 4.063 6 C -0.077 4.077 7 O -0.753 6.753 8 Si 0.758 3.242 9 H -0.220 1.220 10 H -0.204 1.204 11 H -0.194 1.194 12 C 0.284 3.716 13 O -0.411 6.411 14 N -0.402 5.402 15 C -0.029 4.029 16 C 0.305 3.695 17 O -0.397 6.397 18 N -0.390 5.390 19 C 0.092 3.908 20 C -0.123 4.123 21 N -0.087 5.087 22 C -0.097 4.097 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.242 0.758 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.937 8.805 10.522 14.950 hybrid contribution -0.224 -0.039 0.034 0.230 sum -6.162 8.767 10.556 15.042 Atomic orbital electron populations 1.20659 0.92336 1.01698 1.01326 1.19679 0.95056 0.93551 1.03674 1.20767 0.94029 0.96678 1.02492 1.21242 0.94297 0.98176 1.03144 1.21408 0.99191 0.92129 0.93620 1.22558 0.88803 1.07324 0.89047 1.95080 1.81181 1.30789 1.68293 0.86559 0.80043 0.75293 0.82301 1.22025 1.20423 1.19363 1.23987 0.79874 0.78710 0.89045 1.90449 1.35449 1.37071 1.78133 1.46574 1.51539 1.33766 1.08330 1.20943 1.00061 0.95811 0.86072 1.20929 0.80966 0.86594 0.80980 1.90730 1.35242 1.46577 1.67135 1.45793 1.50816 1.30716 1.11661 1.18619 0.99790 0.92690 0.79661 1.29058 0.93883 0.94322 0.94994 1.81290 1.08175 1.06803 1.12382 1.21082 0.92405 0.99525 0.96734 1.21006 0.94563 0.96650 1.02623 0.92157 0.92369 0.92350 0.87195 0.86443 0.75772 0.88886 0.88890 0.75550 0.86619 0.86611 0.85413 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.01 36.00 0.36 -1.01 16 2 C -0.12 -2.11 5.88 -104.63 -0.62 -2.73 16 3 C -0.12 -2.21 9.70 -39.58 -0.38 -2.60 16 4 C -0.15 -3.16 7.64 -39.58 -0.30 -3.46 16 5 C -0.06 -1.54 4.39 -104.62 -0.46 -1.99 16 6 C 0.03 0.74 0.70 -29.04 -0.02 0.72 16 7 O -0.81 -28.10 16.19 -55.09 -0.89 -28.99 16 8 Si 0.93 23.05 24.29 -169.99 -4.13 18.92 16 9 H -0.29 -6.13 6.38 56.52 0.36 -5.77 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.49 12.88 5.95 -10.99 -0.07 12.82 16 13 O -0.54 -15.68 16.51 -14.31 -0.24 -15.91 16 14 N -0.74 -15.10 5.07 -61.48 -0.31 -15.41 16 15 C 0.10 1.49 6.15 -5.20 -0.03 1.46 16 16 C 0.52 6.36 7.90 -10.98 -0.09 6.27 16 17 O -0.52 -7.97 15.67 5.56 0.09 -7.88 16 18 N -0.73 -5.75 5.54 -63.16 -0.35 -6.10 16 19 C 0.22 1.32 6.15 -6.82 -0.04 1.27 16 20 C 0.20 1.49 15.55 -20.76 -0.32 1.17 16 21 N -0.41 -4.34 18.54 42.16 0.78 -3.55 16 22 C -0.08 -1.90 9.35 -39.58 -0.37 -2.27 16 23 C -0.13 -2.54 9.70 -39.58 -0.38 -2.93 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.12 2.32 5.26 -52.49 -0.28 2.05 16 29 H 0.40 8.04 5.69 -40.82 -0.23 7.81 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.41 2.41 8.45 -40.82 -0.34 2.07 16 33 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.13 3.33 7.49 -52.49 -0.39 2.94 16 36 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -38.93 321.34 -6.81 -45.74 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.88 Total: 1.61 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -2.72 Total: 6.73 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.12 Total: -25.06 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.04 Total: -52.79 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.93 -6.81 -45.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353256704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.872 kcal (2) G-P(sol) polarization free energy of solvation -38.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds