Wall clock time and date at job start Tue Mar 24 2020 14:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00255 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.46957 * 209.99840 * 6 5 4 8 8 Si 1.86299 * 109.46895 * 329.99407 * 6 5 4 9 9 H 1.48499 * 109.47005 * 60.00303 * 8 6 5 10 10 H 1.48498 * 109.47180 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47256 * 300.00363 * 8 6 5 12 12 C 1.50698 * 109.47288 * 89.99435 * 6 5 4 13 13 O 1.21284 * 119.99829 * 125.00150 * 12 6 5 14 14 N 1.34774 * 120.00292 * 304.99839 * 12 6 5 15 15 C 1.46495 * 119.99979 * 179.97438 * 14 12 6 16 16 C 1.50702 * 109.46858 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99740 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99665 * 179.97438 * 18 16 15 20 20 C 1.47205 * 109.46955 * 179.97438 * 19 18 16 21 21 N 9.57825 * 110.29477 * 261.73675 * 4 1 2 22 22 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 23 23 C 1.38234 * 120.00048 * 0.02876 * 22 5 4 24 24 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 25 25 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 26 26 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 27 27 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 0.97003 * 119.99617 * 0.02562 * 14 12 6 30 30 H 1.08998 * 109.47238 * 300.00095 * 15 14 12 31 31 H 1.08997 * 109.46996 * 60.00728 * 15 14 12 32 32 H 0.96997 * 120.00512 * 0.02562 * 18 16 15 33 33 H 1.08998 * 109.47075 * 299.99621 * 19 18 16 34 34 H 1.08997 * 109.46996 * 60.00154 * 19 18 16 35 35 H 1.08001 * 119.99657 * 180.02562 * 22 5 4 36 36 H 1.08004 * 119.99527 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 8 6.2575 -1.1653 -0.6633 8 14 6.4029 1.5230 -0.8612 9 1 5.9053 2.7339 -0.1602 10 1 7.8879 1.5227 -0.8561 11 1 5.9132 1.5263 -2.2631 12 6 6.2756 -0.0034 1.4339 13 8 7.0444 -0.8646 1.8057 14 7 5.8660 0.9508 2.2931 15 6 6.3487 0.9472 3.6762 16 6 5.7447 2.1091 4.4220 17 8 4.9861 2.8659 3.8540 18 7 6.0483 2.3078 5.7200 19 6 5.4616 3.4377 6.4449 20 6 5.9465 3.4341 7.8347 21 7 6.3218 3.4322 8.9070 22 6 3.5805 -1.1972 0.0006 23 6 2.1981 -1.1972 -0.0046 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 4.1205 2.1324 0.0100 29 1 5.2509 1.6394 1.9958 30 1 6.0581 0.0148 4.1601 31 1 7.4350 1.0365 3.6821 32 1 6.6559 1.7032 6.1741 33 1 5.7519 4.3701 5.9608 34 1 4.3753 3.3482 6.4393 35 1 4.1205 -2.1325 0.0009 36 1 1.6582 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353256704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:01:23 Heat of formation + Delta-G solvation = -106.073263 kcal Electronic energy + Delta-G solvation = -22437.672699 eV Core-core repulsion = 18885.969530 eV Total energy + Delta-G solvation = -3551.703169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24529 -40.41650 -39.50706 -37.96359 -35.70138 -35.24099 -34.80552 -32.03909 -31.61717 -30.51667 -28.43493 -27.32107 -24.74474 -23.38175 -22.01752 -21.70332 -20.83225 -19.66041 -18.15712 -17.53327 -17.16446 -16.86263 -16.71054 -16.36008 -16.14075 -15.83070 -15.70452 -15.15243 -14.98534 -14.68561 -14.33812 -14.17768 -14.03441 -13.99037 -13.78630 -13.53266 -13.36739 -13.03088 -12.95444 -12.69305 -12.30080 -12.18592 -11.98018 -11.68816 -11.32570 -11.16692 -10.88351 -10.32768 -9.98213 -9.66035 -9.17531 -8.33317 -7.74875 0.59142 0.68664 1.14050 1.25527 1.37310 1.42913 1.46344 1.66154 1.94725 2.16336 2.51191 2.72568 2.84458 3.11908 3.65310 4.12359 4.18327 4.32627 4.35718 4.37806 4.48458 4.52953 4.56443 4.66388 4.79325 4.91339 4.98606 5.04142 5.12913 5.13352 5.35787 5.46400 5.55870 5.72730 5.83949 6.09339 6.24321 6.35580 6.40012 6.68306 6.98926 7.43753 7.90687 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004949 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.988169 B = 5656.144892 C = 6686.639516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.154 4.154 5 C -0.092 4.092 6 C -0.027 4.027 7 O -0.898 6.898 8 Si 0.960 3.040 9 H -0.220 1.220 10 H -0.302 1.302 11 H -0.275 1.275 12 C 0.493 3.507 13 O -0.587 6.587 14 N -0.724 5.724 15 C 0.088 3.912 16 C 0.534 3.466 17 O -0.549 6.549 18 N -0.714 5.714 19 C 0.223 3.777 20 C 0.229 3.771 21 N -0.461 5.461 22 C -0.118 4.118 23 C -0.128 4.128 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.410 0.590 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.421 0.579 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 12.007 10.935 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.129 4.129 4 C -0.172 4.172 5 C -0.093 4.093 6 C -0.127 4.127 7 O -0.845 6.845 8 Si 0.785 3.215 9 H -0.145 1.145 10 H -0.229 1.229 11 H -0.201 1.201 12 C 0.283 3.717 13 O -0.466 6.466 14 N -0.385 5.385 15 C -0.039 4.039 16 C 0.320 3.680 17 O -0.426 6.426 18 N -0.370 5.370 19 C 0.097 3.903 20 C -0.089 4.089 21 N -0.139 5.139 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.174 0.826 28 H 0.150 0.850 29 H 0.249 0.751 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.248 12.422 11.857 19.504 hybrid contribution 0.695 -1.159 -0.273 1.379 sum -8.553 11.263 11.584 18.281 Atomic orbital electron populations 1.20747 0.88280 1.03683 1.02986 1.20241 0.97812 0.92278 1.00485 1.21278 0.92857 0.98830 0.99897 1.21333 0.95812 0.96843 1.03189 1.21070 0.97326 0.93984 0.96956 1.23378 0.91428 1.07598 0.90254 1.94975 1.83314 1.35172 1.71043 0.86068 0.78102 0.75850 0.81512 1.14459 1.22902 1.20056 1.23503 0.79452 0.79200 0.89555 1.90399 1.37867 1.39268 1.79064 1.46106 1.50411 1.31942 1.10001 1.21212 1.01126 0.98068 0.83524 1.20140 0.80591 0.85303 0.81961 1.90722 1.36601 1.47236 1.68055 1.45516 1.50091 1.31154 1.10191 1.18890 1.00645 0.92455 0.78285 1.29150 0.92327 0.92668 0.94731 1.81342 1.09971 1.08531 1.14094 1.20916 0.94544 0.97810 1.00338 1.21226 0.92588 0.99117 1.01610 0.90456 0.91078 0.89838 0.82576 0.84997 0.75124 0.88205 0.87645 0.74233 0.84539 0.84642 0.90206 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 10.01 71.23 0.71 -1.37 16 2 C -0.11 -3.40 5.88 -19.87 -0.12 -3.52 16 3 C -0.11 -3.54 9.70 22.27 0.22 -3.33 16 4 C -0.15 -6.11 7.64 22.27 0.17 -5.94 16 5 C -0.09 -4.66 4.39 -19.87 -0.09 -4.75 16 6 C -0.03 -1.56 0.70 29.10 0.02 -1.54 16 7 O -0.90 -67.58 16.19 -129.99 -2.10 -69.69 16 8 Si 0.96 47.34 24.29 68.60 1.67 49.01 16 9 H -0.22 -8.24 6.38 99.48 0.63 -7.60 16 10 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 12 C 0.49 26.79 5.95 87.66 0.52 27.31 16 13 O -0.59 -36.47 16.51 15.95 0.26 -36.21 16 14 N -0.72 -29.30 5.07 -466.80 -2.36 -31.67 16 15 C 0.09 2.53 6.15 85.63 0.53 3.06 16 16 C 0.53 11.54 7.90 87.66 0.69 12.24 16 17 O -0.55 -14.79 15.67 -3.01 -0.05 -14.84 16 18 N -0.71 -8.76 5.54 -472.12 -2.61 -11.37 16 19 C 0.22 1.78 6.15 84.57 0.52 2.30 16 20 C 0.23 2.84 15.55 89.44 1.39 4.23 16 21 N -0.46 -9.01 18.54 20.01 0.37 -8.63 16 22 C -0.12 -5.93 9.35 22.27 0.21 -5.72 16 23 C -0.13 -4.88 9.70 22.27 0.22 -4.67 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 27 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.13 4.71 5.26 -2.91 -0.02 4.70 16 29 H 0.41 15.56 5.69 -92.71 -0.53 15.03 16 30 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.42 3.68 8.45 -92.71 -0.78 2.89 16 33 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 4.66 7.49 -2.91 -0.02 4.64 16 36 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -95.36 321.34 0.68 -94.68 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.52 Total: 10.43 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 4.99 Total: 18.30 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -4.61 Total: -51.68 kcal Atomic # 8 Polarization: -118.84 SS G_CDS: -1.89 Total: -120.73 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.01 kcal Total: -95.36 0.68 -94.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353256704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.397 kcal (2) G-P(sol) polarization free energy of solvation -95.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds