Wall clock time and date at job start Tue Mar 24 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30181 * 1 3 3 N 1.37435 * 120.00102 * 2 1 4 4 N 1.38163 * 119.99601 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99901 * 187.20002 * 4 2 1 6 6 C 1.53007 * 109.47352 * 279.42517 * 5 4 2 7 7 C 1.52998 * 109.47234 * 185.50551 * 6 5 4 8 8 C 1.52998 * 109.46873 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00107 * 7.20837 * 4 2 1 11 11 O 1.21251 * 120.00421 * 359.65058 * 10 4 2 12 12 C 1.50702 * 119.99912 * 179.66026 * 10 4 2 13 13 O 1.42902 * 109.47025 * 185.75894 * 12 10 4 14 14 Si 1.86294 * 109.47504 * 65.75945 * 12 10 4 15 15 H 1.48493 * 109.47178 * 55.05943 * 14 12 10 16 16 H 1.48506 * 109.46872 * 295.05853 * 14 12 10 17 17 H 1.48497 * 109.47248 * 175.06082 * 14 12 10 18 18 C 1.53006 * 109.46888 * 305.75557 * 12 10 4 19 19 C 1.52993 * 109.46948 * 184.27408 * 18 12 10 20 20 C 1.50702 * 109.46971 * 180.02562 * 19 18 12 21 21 C 1.38239 * 120.00116 * 269.72780 * 20 19 18 22 22 C 1.38233 * 119.99763 * 179.76473 * 21 20 19 23 23 C 1.38235 * 119.99991 * 0.50860 * 22 21 20 24 24 C 1.38233 * 120.00137 * 359.74883 * 23 22 21 25 25 C 1.38235 * 119.99778 * 90.00113 * 20 19 18 26 26 H 0.97008 * 120.00635 * 187.99526 * 1 2 3 27 27 H 0.97002 * 120.00020 * 179.97438 * 3 2 1 28 28 H 0.96998 * 120.00403 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47155 * 39.42252 * 5 4 2 30 30 H 1.08998 * 109.47297 * 159.42337 * 5 4 2 31 31 H 1.09000 * 109.46499 * 305.50583 * 6 5 4 32 32 H 1.08999 * 109.47150 * 65.50287 * 6 5 4 33 33 H 1.09002 * 109.46687 * 299.99672 * 7 6 5 34 34 H 1.08999 * 109.47268 * 59.99808 * 7 6 5 35 35 H 1.09002 * 109.47085 * 299.99293 * 8 7 6 36 36 H 1.08999 * 109.47441 * 59.99778 * 8 7 6 37 37 H 1.00895 * 111.00315 * 179.97438 * 9 8 7 38 38 H 1.00902 * 110.99456 * 303.95240 * 9 8 7 39 39 H 1.08997 * 109.47270 * 304.27549 * 18 12 10 40 40 H 1.08998 * 109.46622 * 64.27390 * 18 12 10 41 41 H 1.09003 * 109.47603 * 299.99974 * 19 18 12 42 42 H 1.08998 * 109.47474 * 60.00504 * 19 18 12 43 43 H 1.07993 * 119.99842 * 359.97438 * 21 20 19 44 44 H 1.07999 * 119.99864 * 180.22701 * 22 21 20 45 45 H 1.08003 * 119.99819 * 179.72412 * 23 22 21 46 46 H 1.08001 * 119.99737 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00291 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 7 1.9890 1.1902 0.0000 4 7 1.9925 -1.1966 0.0005 5 6 3.4489 -1.2016 0.1596 6 6 4.1096 -0.8790 -1.1823 7 6 5.6274 -1.0186 -1.0500 8 6 6.2881 -0.6954 -2.3916 9 7 7.7455 -0.8300 -2.2648 10 6 1.3266 -2.3592 -0.1454 11 8 0.1206 -2.3555 -0.2708 12 6 2.0809 -3.6638 -0.1525 13 8 1.1811 -4.7326 -0.4529 14 14 2.8457 -3.9482 1.5222 15 1 1.7914 -3.8808 2.5658 16 1 3.8682 -2.9033 1.7833 17 1 3.4873 -5.2870 1.5525 18 6 3.1819 -3.6106 -1.2137 19 6 3.8780 -4.9705 -1.2948 20 6 4.9629 -4.9179 -2.3396 21 6 4.6769 -5.2512 -3.6504 22 6 5.6709 -5.1983 -4.6095 23 6 6.9533 -4.8221 -4.2560 24 6 7.2404 -4.4939 -2.9443 25 6 6.2452 -4.5417 -1.9860 26 1 -0.4851 -0.8319 0.1168 27 1 2.9590 1.1902 0.0004 28 1 1.5041 2.0303 -0.0004 29 1 3.7365 -0.4511 0.8958 30 1 3.7741 -2.1855 0.4975 31 1 3.7459 -1.5710 -1.9419 32 1 3.8625 0.1421 -1.4728 33 1 5.9910 -0.3266 -0.2903 34 1 5.8745 -2.0397 -0.7595 35 1 5.9246 -1.3871 -3.1516 36 1 6.0410 0.3258 -2.6817 37 1 8.2052 -0.6220 -3.1385 38 1 8.0991 -0.2461 -1.5217 39 1 2.7424 -3.3690 -2.1814 40 1 3.9097 -2.8453 -0.9439 41 1 4.3176 -5.2121 -0.3271 42 1 3.1503 -5.7358 -1.5646 43 1 3.6762 -5.5498 -3.9256 44 1 5.4467 -5.4552 -5.6343 45 1 7.7309 -4.7850 -5.0046 46 1 8.2424 -4.2004 -2.6680 47 1 6.4696 -4.2852 -0.9613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180967392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 13:52:50 Heat of formation + Delta-G solvation = -5.381086 kcal Electronic energy + Delta-G solvation = -29433.200815 eV Core-core repulsion = 25617.884453 eV Total energy + Delta-G solvation = -3815.316362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.22254 -38.84144 -36.76496 -36.03347 -34.84832 -33.37706 -31.78560 -31.19755 -30.48717 -30.31234 -27.99270 -26.67863 -25.31246 -22.67893 -22.45961 -22.15924 -21.15865 -20.67533 -19.87449 -18.43756 -17.05524 -16.52488 -16.35993 -15.76140 -15.56047 -15.25267 -15.03856 -14.69345 -14.62968 -14.23292 -14.06125 -13.75098 -13.51801 -13.10969 -12.99115 -12.89791 -12.51955 -12.25810 -12.10957 -12.04987 -11.61544 -11.53462 -11.32621 -11.13679 -10.90654 -10.71815 -10.55016 -10.38781 -10.06784 -9.96134 -9.65436 -9.47609 -9.09746 -8.76720 -8.72961 -8.52202 -8.24101 -7.97260 -7.60950 -5.98815 -5.51159 1.77123 1.80595 3.03954 3.06612 3.25132 3.36914 3.44825 3.93282 4.20264 4.31396 4.47034 4.54200 4.96616 5.02568 5.24847 5.27564 5.29032 5.37996 5.39853 5.53301 5.62825 5.63121 5.76768 5.86528 5.90790 5.91672 6.00905 6.08722 6.10993 6.27140 6.34558 6.38846 6.44400 6.48328 6.64566 6.68887 6.81529 6.86336 6.90391 7.03352 7.05757 7.14021 7.22138 7.32475 7.36421 7.45179 7.54740 7.86378 8.47846 9.12687 9.51619 9.88005 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.006048 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.682386 B = 4628.725878 C = 5909.885343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.605 3.395 3 N -0.857 5.857 4 N -0.590 5.590 5 C 0.072 3.928 6 C -0.149 4.149 7 C -0.117 4.117 8 C 0.065 3.935 9 N -0.847 5.847 10 C 0.490 3.510 11 O -0.511 6.511 12 C 0.008 3.992 13 O -0.808 6.808 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.062 4.062 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.105 4.105 25 C -0.118 4.118 26 H 0.374 0.626 27 H 0.395 0.605 28 H 0.408 0.592 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.021 0.979 37 H 0.338 0.662 38 H 0.336 0.664 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.402 7.635 -3.609 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.237 3.763 3 N -0.415 5.415 4 N -0.330 5.330 5 C -0.052 4.052 6 C -0.188 4.188 7 C -0.155 4.155 8 C -0.065 4.065 9 N -0.375 5.375 10 C 0.283 3.717 11 O -0.382 6.382 12 C -0.096 4.096 13 O -0.751 6.751 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.177 4.177 19 C -0.114 4.114 20 C -0.062 4.062 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.159 4.159 24 C -0.123 4.123 25 C -0.136 4.136 26 H 0.209 0.791 27 H 0.225 0.775 28 H 0.239 0.761 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.134 0.866 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.921 6.884 -2.895 17.585 hybrid contribution 0.475 0.777 -0.438 1.011 sum 16.395 7.662 -3.333 18.402 Atomic orbital electron populations 1.69292 1.02246 1.42401 1.33020 1.19343 0.87178 0.79887 0.89893 1.41861 1.08434 1.04886 1.86305 1.47185 1.08304 1.06269 1.71211 1.22524 0.80081 1.05545 0.97074 1.22315 0.95022 1.02469 0.98952 1.21536 0.94011 1.03174 0.96786 1.21749 0.87701 0.98738 0.98331 1.58666 1.04929 1.63442 1.10485 1.24977 0.89661 0.85108 0.71988 1.90121 1.15624 1.85717 1.46689 1.23522 0.95889 0.89968 1.00206 1.95085 1.55826 1.37749 1.86484 0.87431 0.77031 0.79355 0.83486 1.20539 1.21105 1.18975 1.22742 0.98258 0.95356 1.01367 1.20578 0.94861 1.00443 0.95529 1.20283 0.94915 0.95905 0.95082 1.21120 0.99270 1.00652 0.92891 1.21060 0.93476 1.00600 0.98885 1.20972 0.96450 1.02155 0.96357 1.20999 0.98960 0.99279 0.93051 1.21011 0.92668 1.00532 0.99379 0.79140 0.77493 0.76119 0.91184 0.86601 0.89249 0.92062 0.92256 0.90295 0.90798 0.96116 0.85016 0.85253 0.92797 0.91639 0.92202 0.89406 0.86249 0.86955 0.87150 0.86576 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.06 13.83 30.25 0.42 -18.65 16 2 C 0.61 12.25 8.52 -319.38 -2.72 9.53 16 3 N -0.86 -12.07 8.69 30.24 0.26 -11.80 16 4 N -0.59 -12.40 2.62 -116.81 -0.31 -12.71 16 5 C 0.07 1.17 3.45 -4.04 -0.01 1.15 16 6 C -0.15 -2.02 4.28 -26.73 -0.11 -2.14 16 7 C -0.12 -1.30 5.32 -26.73 -0.14 -1.44 16 8 C 0.07 0.67 6.79 -3.82 -0.03 0.64 16 9 N -0.85 -7.29 9.62 -10.37 -0.10 -7.38 16 10 C 0.49 13.01 5.90 -10.99 -0.06 12.94 16 11 O -0.51 -15.57 13.41 -14.27 -0.19 -15.76 16 12 C 0.01 0.23 0.62 -27.88 -0.02 0.21 16 13 O -0.81 -27.36 16.36 -55.08 -0.90 -28.26 16 14 Si 0.90 21.13 23.16 -169.99 -3.94 17.19 16 15 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -5.28 5.46 56.52 0.31 -4.97 16 17 H -0.26 -6.15 6.61 56.52 0.37 -5.78 16 18 C -0.14 -3.05 2.61 -26.73 -0.07 -3.12 16 19 C -0.08 -1.59 4.76 -27.89 -0.13 -1.72 16 20 C -0.06 -1.06 5.13 -104.62 -0.54 -1.60 16 21 C -0.12 -1.98 9.70 -39.58 -0.38 -2.36 16 22 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.14 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.10 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.74 9.34 -39.58 -0.37 -2.11 16 26 H 0.37 9.95 5.18 -43.32 -0.22 9.72 16 27 H 0.40 4.41 5.99 -40.82 -0.24 4.16 16 28 H 0.41 5.07 8.94 -40.82 -0.37 4.70 16 29 H 0.07 0.93 7.29 -51.93 -0.38 0.55 16 30 H 0.12 2.07 1.70 -51.93 -0.09 1.98 16 31 H 0.09 1.44 5.63 -51.93 -0.29 1.15 16 32 H 0.06 0.74 6.87 -51.93 -0.36 0.38 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.99 7.02 -51.93 -0.36 0.62 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.34 2.46 9.08 -39.29 -0.36 2.11 16 38 H 0.34 2.41 8.99 -39.29 -0.35 2.05 16 39 H 0.05 1.25 7.82 -51.93 -0.41 0.85 16 40 H 0.07 1.20 2.08 -51.93 -0.11 1.09 16 41 H 0.06 1.20 5.83 -51.93 -0.30 0.90 16 42 H 0.09 2.06 7.52 -51.93 -0.39 1.67 16 43 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.12 1.60 7.83 -52.49 -0.41 1.19 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -36.33 357.88 -11.67 -48.00 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -6.52 Total: 20.03 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -5.79 Total: 3.95 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.28 Total: -50.54 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.09 Total: -44.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -3.94 Total: 17.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.33 -11.67 -48.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180967392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.621 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds