Wall clock time and date at job start Tue Mar 24 2020 13:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30184 * 1 3 3 N 1.37447 * 119.99808 * 2 1 4 4 N 1.38155 * 120.00348 * 180.27143 * 2 1 3 5 5 C 1.46502 * 119.99915 * 215.30146 * 4 2 1 6 6 C 1.52995 * 109.47253 * 89.99788 * 5 4 2 7 7 C 1.53010 * 109.47275 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47108 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47063 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00239 * 35.30042 * 4 2 1 11 11 O 1.21250 * 120.00751 * 181.65360 * 10 4 2 12 12 C 1.50701 * 119.99632 * 1.64601 * 10 4 2 13 13 O 1.42902 * 109.46870 * 164.28957 * 12 10 4 14 14 Si 1.86300 * 109.47432 * 284.28842 * 12 10 4 15 15 H 1.48500 * 109.47185 * 25.41101 * 14 12 10 16 16 H 1.48504 * 109.47065 * 145.41051 * 14 12 10 17 17 H 1.48496 * 109.47186 * 265.40835 * 14 12 10 18 18 C 1.53002 * 109.47306 * 44.29252 * 12 10 4 19 19 C 1.52996 * 109.47468 * 187.41115 * 18 12 10 20 20 C 1.50694 * 109.47095 * 179.97438 * 19 18 12 21 21 C 1.38241 * 120.00202 * 269.72202 * 20 19 18 22 22 C 1.38223 * 120.00162 * 179.76515 * 21 20 19 23 23 C 1.38235 * 120.00373 * 0.51411 * 22 21 20 24 24 C 1.38241 * 119.99723 * 359.74457 * 23 22 21 25 25 C 1.38233 * 120.00133 * 90.00386 * 20 19 18 26 26 H 0.96999 * 119.99465 * 144.27459 * 1 2 3 27 27 H 0.97003 * 120.00153 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99881 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47036 * 210.00205 * 5 4 2 30 30 H 1.08999 * 109.47255 * 329.99511 * 5 4 2 31 31 H 1.08993 * 109.47538 * 299.99906 * 6 5 4 32 32 H 1.08999 * 109.47157 * 60.00252 * 6 5 4 33 33 H 1.09005 * 109.46821 * 299.99961 * 7 6 5 34 34 H 1.08999 * 109.46804 * 60.00058 * 7 6 5 35 35 H 1.09005 * 109.46986 * 299.99539 * 8 7 6 36 36 H 1.08999 * 109.47562 * 59.99611 * 8 7 6 37 37 H 1.00901 * 111.00361 * 56.04105 * 9 8 7 38 38 H 1.00900 * 111.00369 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46698 * 307.41256 * 18 12 10 40 40 H 1.09004 * 109.46872 * 67.40862 * 18 12 10 41 41 H 1.09004 * 109.46777 * 299.99657 * 19 18 12 42 42 H 1.08999 * 109.47036 * 59.99289 * 19 18 12 43 43 H 1.07999 * 119.99341 * 0.02562 * 21 20 19 44 44 H 1.08001 * 120.00339 * 180.22943 * 22 21 20 45 45 H 1.07997 * 120.00632 * 179.72356 * 23 22 21 46 46 H 1.07999 * 120.00240 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.99753 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 7 1.9890 1.1903 0.0000 4 7 1.9927 -1.1964 -0.0057 5 6 3.2557 -1.3164 0.7270 6 6 2.9735 -1.7806 2.1572 7 6 4.2926 -1.9065 2.9222 8 6 4.0105 -2.3713 4.3523 9 7 5.2769 -2.4916 5.0870 10 6 1.5048 -2.2531 -0.6851 11 8 2.0955 -3.3118 -0.6656 12 6 0.2248 -2.1189 -1.4691 13 8 0.1048 -3.2163 -2.3765 14 14 -1.2240 -2.1203 -0.2978 15 1 -0.7819 -1.6424 1.0369 16 1 -2.2835 -1.2203 -0.8200 17 1 -1.7613 -3.4993 -0.1768 18 6 0.2435 -0.8066 -2.2556 19 6 -1.1241 -0.5804 -2.9030 20 6 -1.1057 0.7124 -3.6771 21 6 -1.4674 1.8942 -3.0577 22 6 -1.4459 3.0807 -3.7663 23 6 -1.0729 3.0842 -5.0974 24 6 -0.7163 1.9017 -5.7184 25 6 -0.7328 0.7158 -5.0082 26 1 -0.4849 -0.6820 -0.4905 27 1 1.5040 2.0304 -0.0004 28 1 2.9590 1.1904 -0.0004 29 1 3.8970 -2.0436 0.2288 30 1 3.7552 -0.3479 0.7511 31 1 2.3323 -1.0535 2.6554 32 1 2.4741 -2.7491 2.1331 33 1 4.9335 -2.6340 2.4239 34 1 4.7925 -0.9382 2.9464 35 1 3.3694 -1.6441 4.8509 36 1 3.5108 -3.3397 4.3278 37 1 5.7895 -1.6227 5.0687 38 1 5.1173 -2.7970 6.0353 39 1 0.4665 0.0189 -1.5795 40 1 1.0084 -0.8584 -3.0305 41 1 -1.3470 -1.4059 -3.5791 42 1 -1.8889 -0.5288 -2.1281 43 1 -1.7627 1.8908 -2.0188 44 1 -1.7249 4.0045 -3.2814 45 1 -1.0604 4.0106 -5.6523 46 1 -0.4253 1.9043 -6.7584 47 1 -0.4542 -0.2080 -5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180967392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 13:53:00 Heat of formation + Delta-G solvation = 57.144489 kcal Electronic energy + Delta-G solvation = -28425.273155 eV Core-core repulsion = 24612.668105 eV Total energy + Delta-G solvation = -3812.605050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.54376 -38.79430 -36.78460 -36.44472 -34.94609 -33.43100 -32.17447 -31.21121 -30.52320 -30.43158 -27.77962 -27.01336 -24.82230 -22.77316 -22.42604 -22.11830 -21.18362 -20.77344 -19.86269 -19.40735 -16.89496 -16.48205 -16.28706 -16.18569 -15.63156 -15.34857 -15.06819 -14.77094 -14.59309 -14.51505 -14.20353 -13.38253 -13.35043 -13.23004 -12.98471 -12.92129 -12.63561 -12.30940 -12.17389 -11.95378 -11.69439 -11.48107 -11.33600 -11.09940 -10.91545 -10.66004 -10.55785 -10.50870 -10.15611 -9.68637 -9.55600 -9.13599 -8.90371 -8.82312 -8.71791 -8.59372 -8.51932 -8.13316 -7.21183 -5.90445 -5.42361 1.79238 1.79741 2.64328 3.19755 3.24396 3.35355 3.52064 3.85312 4.20814 4.33838 4.39457 4.50411 4.89259 4.97533 5.22835 5.26194 5.28836 5.34127 5.38472 5.55436 5.58239 5.60996 5.74839 5.81933 5.91226 5.95551 5.99009 6.05582 6.16300 6.18290 6.33729 6.36244 6.43674 6.48181 6.66093 6.76056 6.79680 6.85627 6.90099 6.91121 6.92342 7.16220 7.20834 7.31298 7.43407 7.47506 7.58459 7.83729 7.95511 8.93045 9.14828 9.93435 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003819 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.643003 B = 7329.777998 C = 8001.090156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.657 3.343 3 N -0.840 5.840 4 N -0.602 5.602 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.112 4.112 8 C 0.060 3.940 9 N -0.852 5.852 10 C 0.487 3.513 11 O -0.511 6.511 12 C -0.023 4.023 13 O -0.814 6.814 14 Si 0.929 3.071 15 H -0.285 1.285 16 H -0.252 1.252 17 H -0.296 1.296 18 C -0.187 4.187 19 C -0.092 4.092 20 C -0.055 4.055 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.120 4.120 26 H 0.352 0.648 27 H 0.415 0.585 28 H 0.399 0.601 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.338 0.662 38 H 0.340 0.660 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 14.063 6.063 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.293 3.707 3 N -0.395 5.395 4 N -0.344 5.344 5 C -0.022 4.022 6 C -0.172 4.172 7 C -0.151 4.151 8 C -0.071 4.071 9 N -0.382 5.382 10 C 0.280 3.720 11 O -0.381 6.381 12 C -0.126 4.126 13 O -0.757 6.757 14 Si 0.761 3.239 15 H -0.214 1.214 16 H -0.179 1.179 17 H -0.225 1.225 18 C -0.225 4.225 19 C -0.129 4.129 20 C -0.055 4.055 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.159 4.159 24 C -0.141 4.141 25 C -0.138 4.138 26 H 0.191 0.809 27 H 0.247 0.753 28 H 0.229 0.771 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.160 13.011 6.180 14.993 hybrid contribution 0.498 0.331 0.210 0.633 sum 4.658 13.341 6.391 15.509 Atomic orbital electron populations 1.68817 1.01930 1.47580 1.29435 1.18322 0.86723 0.80311 0.85313 1.42125 1.08884 1.05122 1.83379 1.47850 1.24463 1.11561 1.50525 1.21475 0.87110 1.01451 0.92177 1.21889 0.97397 1.02803 0.95135 1.21481 0.97539 1.01396 0.94660 1.21820 0.90369 1.00745 0.94152 1.58720 1.21975 1.37375 1.20082 1.25091 0.88860 0.81774 0.76314 1.90447 1.59697 1.27371 1.60552 1.24289 0.91949 0.96782 0.99551 1.95074 1.87755 1.38894 1.53983 0.86867 0.83540 0.76188 0.77326 1.21440 1.17911 1.22510 1.23580 0.96041 1.01347 1.01533 1.20934 0.99179 0.93205 0.99608 1.20230 0.95400 0.95957 0.93884 1.21158 1.00306 0.91998 1.00081 1.21056 1.00796 0.97728 0.94566 1.20984 1.02019 0.97630 0.95258 1.21068 1.00741 0.92865 0.99466 1.21174 1.00109 0.98127 0.94411 0.80854 0.75323 0.77136 0.89539 0.91355 0.91955 0.91023 0.90779 0.92239 0.95633 0.90838 0.85005 0.84835 0.88445 0.93153 0.90162 0.90677 0.85806 0.86705 0.86949 0.86759 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.24 10.02 29.75 0.30 -16.94 16 2 C 0.66 12.40 5.80 -319.37 -1.85 10.55 16 3 N -0.84 -10.71 8.88 29.74 0.26 -10.45 16 4 N -0.60 -12.62 2.64 -117.55 -0.31 -12.93 16 5 C 0.10 1.66 5.31 -4.04 -0.02 1.64 16 6 C -0.13 -2.01 5.54 -26.73 -0.15 -2.16 16 7 C -0.11 -1.33 5.48 -26.73 -0.15 -1.48 16 8 C 0.06 0.66 6.79 -3.83 -0.03 0.64 16 9 N -0.85 -8.11 9.62 -10.37 -0.10 -8.21 16 10 C 0.49 13.32 5.84 -10.99 -0.06 13.26 16 11 O -0.51 -15.49 16.17 -13.82 -0.22 -15.71 16 12 C -0.02 -0.65 0.63 -27.88 -0.02 -0.67 16 13 O -0.81 -29.23 16.89 -54.64 -0.92 -30.15 16 14 Si 0.93 24.78 21.81 -169.99 -3.71 21.07 16 15 H -0.29 -7.23 6.33 56.52 0.36 -6.87 16 16 H -0.25 -6.03 5.13 56.52 0.29 -5.74 16 17 H -0.30 -8.59 7.11 56.52 0.40 -8.19 16 18 C -0.19 -4.61 3.65 -26.73 -0.10 -4.71 16 19 C -0.09 -2.12 4.54 -27.89 -0.13 -2.24 16 20 C -0.05 -1.05 5.13 -104.63 -0.54 -1.59 16 21 C -0.12 -1.97 9.70 -39.59 -0.38 -2.35 16 22 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 23 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 24 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 26 H 0.35 8.33 0.28 -40.82 -0.01 8.32 16 27 H 0.41 4.46 8.94 -40.82 -0.37 4.10 16 28 H 0.40 3.95 7.26 -40.82 -0.30 3.65 16 29 H 0.09 1.53 7.45 -51.93 -0.39 1.14 16 30 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.34 2.66 8.99 -39.29 -0.35 2.31 16 38 H 0.34 2.65 9.08 -39.29 -0.36 2.29 16 39 H 0.10 2.16 3.01 -84.51 -0.25 1.91 16 40 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.99 7.84 -51.93 -0.41 1.59 16 42 H 0.08 1.72 4.63 -51.93 -0.24 1.48 16 43 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -39.23 364.00 -11.24 -50.47 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.03 Total: 15.69 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -5.00 Total: 1.67 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.15 Total: -48.53 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.15 Total: -45.86 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -3.71 Total: 21.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.23 -11.24 -50.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180967392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.612 kcal (2) G-P(sol) polarization free energy of solvation -39.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds