Wall clock time and date at job start Tue Mar 24 2020 13:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30184 * 1 3 3 N 1.37447 * 119.99808 * 2 1 4 4 N 1.38155 * 120.00348 * 180.27143 * 2 1 3 5 5 C 1.46502 * 119.99915 * 215.30146 * 4 2 1 6 6 C 1.52995 * 109.47253 * 89.99788 * 5 4 2 7 7 C 1.53010 * 109.47275 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47108 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47063 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00239 * 35.30042 * 4 2 1 11 11 O 1.21250 * 120.00751 * 181.65360 * 10 4 2 12 12 C 1.50701 * 119.99632 * 1.64601 * 10 4 2 13 13 O 1.42902 * 109.46870 * 164.28957 * 12 10 4 14 14 Si 1.86300 * 109.47432 * 284.28842 * 12 10 4 15 15 H 1.48500 * 109.47185 * 25.41101 * 14 12 10 16 16 H 1.48504 * 109.47065 * 145.41051 * 14 12 10 17 17 H 1.48496 * 109.47186 * 265.40835 * 14 12 10 18 18 C 1.53002 * 109.47306 * 44.29252 * 12 10 4 19 19 C 1.52996 * 109.47468 * 187.41115 * 18 12 10 20 20 C 1.50694 * 109.47095 * 179.97438 * 19 18 12 21 21 C 1.38241 * 120.00202 * 269.72202 * 20 19 18 22 22 C 1.38223 * 120.00162 * 179.76515 * 21 20 19 23 23 C 1.38235 * 120.00373 * 0.51411 * 22 21 20 24 24 C 1.38241 * 119.99723 * 359.74457 * 23 22 21 25 25 C 1.38233 * 120.00133 * 90.00386 * 20 19 18 26 26 H 0.96999 * 119.99465 * 144.27459 * 1 2 3 27 27 H 0.97003 * 120.00153 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99881 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47036 * 210.00205 * 5 4 2 30 30 H 1.08999 * 109.47255 * 329.99511 * 5 4 2 31 31 H 1.08993 * 109.47538 * 299.99906 * 6 5 4 32 32 H 1.08999 * 109.47157 * 60.00252 * 6 5 4 33 33 H 1.09005 * 109.46821 * 299.99961 * 7 6 5 34 34 H 1.08999 * 109.46804 * 60.00058 * 7 6 5 35 35 H 1.09005 * 109.46986 * 299.99539 * 8 7 6 36 36 H 1.08999 * 109.47562 * 59.99611 * 8 7 6 37 37 H 1.00901 * 111.00361 * 56.04105 * 9 8 7 38 38 H 1.00900 * 111.00369 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46698 * 307.41256 * 18 12 10 40 40 H 1.09004 * 109.46872 * 67.40862 * 18 12 10 41 41 H 1.09004 * 109.46777 * 299.99657 * 19 18 12 42 42 H 1.08999 * 109.47036 * 59.99289 * 19 18 12 43 43 H 1.07999 * 119.99341 * 0.02562 * 21 20 19 44 44 H 1.08001 * 120.00339 * 180.22943 * 22 21 20 45 45 H 1.07997 * 120.00632 * 179.72356 * 23 22 21 46 46 H 1.07999 * 120.00240 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.99753 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 7 1.9890 1.1903 0.0000 4 7 1.9927 -1.1964 -0.0057 5 6 3.2557 -1.3164 0.7270 6 6 2.9735 -1.7806 2.1572 7 6 4.2926 -1.9065 2.9222 8 6 4.0105 -2.3713 4.3523 9 7 5.2769 -2.4916 5.0870 10 6 1.5048 -2.2531 -0.6851 11 8 2.0955 -3.3118 -0.6656 12 6 0.2248 -2.1189 -1.4691 13 8 0.1048 -3.2163 -2.3765 14 14 -1.2240 -2.1203 -0.2978 15 1 -0.7819 -1.6424 1.0369 16 1 -2.2835 -1.2203 -0.8200 17 1 -1.7613 -3.4993 -0.1768 18 6 0.2435 -0.8066 -2.2556 19 6 -1.1241 -0.5804 -2.9030 20 6 -1.1057 0.7124 -3.6771 21 6 -1.4674 1.8942 -3.0577 22 6 -1.4459 3.0807 -3.7663 23 6 -1.0729 3.0842 -5.0974 24 6 -0.7163 1.9017 -5.7184 25 6 -0.7328 0.7158 -5.0082 26 1 -0.4849 -0.6820 -0.4905 27 1 1.5040 2.0304 -0.0004 28 1 2.9590 1.1904 -0.0004 29 1 3.8970 -2.0436 0.2288 30 1 3.7552 -0.3479 0.7511 31 1 2.3323 -1.0535 2.6554 32 1 2.4741 -2.7491 2.1331 33 1 4.9335 -2.6340 2.4239 34 1 4.7925 -0.9382 2.9464 35 1 3.3694 -1.6441 4.8509 36 1 3.5108 -3.3397 4.3278 37 1 5.7895 -1.6227 5.0687 38 1 5.1173 -2.7970 6.0353 39 1 0.4665 0.0189 -1.5795 40 1 1.0084 -0.8584 -3.0305 41 1 -1.3470 -1.4059 -3.5791 42 1 -1.8889 -0.5288 -2.1281 43 1 -1.7627 1.8908 -2.0188 44 1 -1.7249 4.0045 -3.2814 45 1 -1.0604 4.0106 -5.6523 46 1 -0.4253 1.9043 -6.7584 47 1 -0.4542 -0.2080 -5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180967392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 13:52:59 Heat of formation + Delta-G solvation = 25.452892 kcal Electronic energy + Delta-G solvation = -28426.647406 eV Core-core repulsion = 24612.668105 eV Total energy + Delta-G solvation = -3813.979300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36182 -40.10251 -38.71587 -37.65911 -36.44703 -34.85474 -33.58411 -32.69467 -32.33455 -31.68101 -29.58645 -28.36866 -26.60756 -24.26772 -23.88142 -23.33814 -22.39959 -22.15686 -21.68581 -21.04486 -18.47851 -18.01767 -17.72260 -17.45048 -16.88936 -16.68121 -16.48923 -16.19580 -16.02272 -15.88757 -15.45018 -15.22168 -15.02051 -14.87969 -14.35479 -14.29493 -14.17779 -13.88366 -13.60930 -13.49856 -13.09761 -13.03199 -12.72925 -12.57820 -12.23039 -12.18327 -12.03420 -11.85097 -11.72833 -11.63920 -11.50442 -11.09599 -10.94264 -10.49249 -10.22688 -9.73668 -9.65205 -9.50451 -8.94587 -8.40694 -7.90570 0.54289 0.58558 0.86868 1.07673 1.20391 1.29878 1.62243 1.84870 2.34204 2.93442 2.99236 3.52838 3.76103 3.88052 3.92760 4.00414 4.07149 4.21380 4.23321 4.26916 4.30170 4.36909 4.42063 4.47108 4.53531 4.62815 4.68494 4.74294 4.75072 4.77832 4.83725 4.95269 4.99914 5.20948 5.22041 5.24812 5.27824 5.34954 5.36510 5.39589 5.67769 5.68731 5.90886 5.97106 6.18771 6.23237 6.34157 6.41912 6.59739 7.03908 7.43194 7.67301 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003819 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.643003 B = 7329.777998 C = 8001.090156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.655 3.345 3 N -0.801 5.801 4 N -0.598 5.598 5 C 0.095 3.905 6 C -0.127 4.127 7 C -0.102 4.102 8 C 0.061 3.939 9 N -0.858 5.858 10 C 0.484 3.516 11 O -0.559 6.559 12 C -0.074 4.074 13 O -0.898 6.898 14 Si 0.963 3.037 15 H -0.262 1.262 16 H -0.211 1.211 17 H -0.343 1.343 18 C -0.169 4.169 19 C -0.084 4.084 20 C -0.084 4.084 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.144 4.144 26 H 0.335 0.665 27 H 0.432 0.568 28 H 0.419 0.581 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.350 0.650 38 H 0.350 0.650 39 H 0.132 0.868 40 H 0.019 0.981 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.140 0.860 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 20.136 7.374 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.292 3.708 3 N -0.359 5.359 4 N -0.338 5.338 5 C -0.027 4.027 6 C -0.166 4.166 7 C -0.140 4.140 8 C -0.069 4.069 9 N -0.389 5.389 10 C 0.276 3.724 11 O -0.434 6.434 12 C -0.174 4.174 13 O -0.845 6.845 14 Si 0.793 3.207 15 H -0.189 1.189 16 H -0.136 1.136 17 H -0.276 1.276 18 C -0.207 4.207 19 C -0.121 4.121 20 C -0.084 4.084 21 C -0.141 4.141 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.162 4.162 26 H 0.172 0.828 27 H 0.268 0.732 28 H 0.252 0.748 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.147 0.853 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.158 0.842 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.167 19.237 7.544 21.300 hybrid contribution 0.329 -1.438 -0.217 1.491 sum 5.496 17.800 7.327 20.018 Atomic orbital electron populations 1.68884 1.02839 1.46347 1.31496 1.18714 0.86497 0.81177 0.84461 1.41968 1.09909 1.03380 1.80625 1.47493 1.25858 1.10837 1.49638 1.21881 0.84726 1.04253 0.91879 1.21819 0.99178 1.00714 0.94894 1.21386 0.95380 1.02857 0.94380 1.21705 0.91218 0.99982 0.94044 1.58647 1.21199 1.38301 1.20794 1.24427 0.88506 0.82568 0.76934 1.90403 1.60867 1.29488 1.62594 1.25115 0.94780 0.96802 1.00681 1.94979 1.90159 1.42253 1.57077 0.86253 0.82573 0.74217 0.77616 1.18890 1.13635 1.27578 1.23427 0.96540 1.00037 1.00686 1.20712 0.97808 0.94534 0.99057 1.19950 0.99043 0.95000 0.94446 1.21242 1.00320 0.91937 1.00572 1.21467 0.98951 0.97927 0.94702 1.21489 0.99298 0.98451 0.95254 1.21362 0.99865 0.92086 1.00582 1.21175 1.01594 0.98996 0.94425 0.82807 0.73218 0.74786 0.91315 0.85541 0.90907 0.95231 0.92117 0.88902 0.94532 0.92881 0.83628 0.83669 0.85122 0.96170 0.94191 0.90899 0.85343 0.82795 0.82829 0.84183 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -33.65 10.02 -59.79 -0.60 -34.25 16 2 C 0.65 23.16 5.80 260.29 1.51 24.67 16 3 N -0.80 -16.60 8.88 -59.81 -0.53 -17.13 16 4 N -0.60 -24.85 2.64 -644.22 -1.70 -26.56 16 5 C 0.09 2.94 5.31 86.38 0.46 3.40 16 6 C -0.13 -3.69 5.54 30.60 0.17 -3.52 16 7 C -0.10 -2.19 5.48 30.60 0.17 -2.02 16 8 C 0.06 1.26 6.79 86.30 0.59 1.85 16 9 N -0.86 -14.45 9.62 -186.72 -1.80 -16.25 16 10 C 0.48 27.70 5.84 87.66 0.51 28.21 16 11 O -0.56 -36.30 16.17 15.62 0.25 -36.04 16 12 C -0.07 -4.54 0.63 29.85 0.02 -4.52 16 13 O -0.90 -70.10 16.89 -130.42 -2.20 -72.30 16 14 Si 0.96 53.01 21.81 68.60 1.50 54.50 16 15 H -0.26 -13.13 6.33 99.48 0.63 -12.51 16 16 H -0.21 -10.09 5.13 99.48 0.51 -9.58 16 17 H -0.34 -21.39 7.11 99.48 0.71 -20.68 16 18 C -0.17 -8.70 3.65 30.59 0.11 -8.59 16 19 C -0.08 -4.04 4.54 29.84 0.14 -3.91 16 20 C -0.08 -3.25 5.13 -19.87 -0.10 -3.35 16 21 C -0.12 -3.79 9.70 22.27 0.22 -3.57 16 22 C -0.11 -2.62 10.05 22.27 0.22 -2.40 16 23 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 24 C -0.12 -3.26 10.05 22.27 0.22 -3.03 16 25 C -0.14 -5.14 9.70 22.27 0.22 -4.93 16 26 H 0.33 15.75 0.28 -92.71 -0.03 15.72 16 27 H 0.43 6.86 8.94 -92.71 -0.83 6.03 16 28 H 0.42 5.87 7.26 -92.71 -0.67 5.20 16 29 H 0.07 2.43 7.45 -2.39 -0.02 2.42 16 30 H 0.13 2.41 6.40 -2.39 -0.02 2.40 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.35 4.43 8.99 -89.69 -0.81 3.62 16 38 H 0.35 4.76 9.08 -89.69 -0.81 3.94 16 39 H 0.13 5.75 3.01 -65.29 -0.20 5.55 16 40 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 2.17 7.84 -2.39 -0.02 2.16 16 42 H 0.07 3.42 4.63 -2.39 -0.01 3.41 16 43 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -98.37 364.00 -2.23 -100.61 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.82 Total: 31.73 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 4.67 Total: 15.69 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.63 Total: -94.19 kcal Atomic # 8 Polarization: -106.39 SS G_CDS: -1.95 Total: -108.34 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 1.50 Total: 54.50 kcal Total: -98.37 -2.23 -100.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180967392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.058 kcal (2) G-P(sol) polarization free energy of solvation -98.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds