Wall clock time and date at job start Tue Mar 24 2020 09:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 H 1.09007 * 109.46916 * 54.99823 * 3 2 1 5 5 C 1.53000 * 109.46838 * 295.00165 * 3 2 1 6 6 C 1.52998 * 109.47007 * 174.99907 * 3 2 1 7 7 O 1.42895 * 109.47285 * 304.01468 * 6 3 2 8 8 Si 1.86298 * 109.46981 * 64.01783 * 6 3 2 9 9 H 1.48496 * 109.47091 * 303.91414 * 8 6 3 10 10 H 1.48502 * 109.46801 * 183.92026 * 8 6 3 11 11 H 1.48497 * 109.47224 * 63.91948 * 8 6 3 12 12 C 1.50709 * 109.46784 * 184.01373 * 6 3 2 13 13 O 1.21257 * 119.99895 * 115.03767 * 12 6 3 14 14 N 1.34780 * 119.99934 * 295.03913 * 12 6 3 15 15 C 1.38326 * 119.99908 * 10.07728 * 14 12 6 16 16 N 1.16921 * 105.60713 * 340.79005 * 11 8 6 17 17 N 1.37458 * 120.00046 * 144.07815 * 15 14 12 18 18 C 1.40358 * 119.99766 * 190.07620 * 14 12 6 19 19 C 1.40383 * 125.96753 * 9.93380 * 18 14 12 20 20 C 1.35235 * 107.86986 * 179.97438 * 19 18 14 21 21 C 1.50694 * 126.07500 * 179.97438 * 20 19 18 22 22 N 1.34976 * 107.85651 * 0.02562 * 20 19 18 23 23 H 0.97003 * 125.97894 * 180.02562 * 22 20 19 24 24 N 1.31199 * 125.97169 * 189.62426 * 18 14 12 25 25 H 1.09008 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47441 * 300.00079 * 1 2 3 27 27 H 1.09001 * 109.47409 * 60.00247 * 1 2 3 28 28 H 1.09001 * 109.47071 * 240.00282 * 2 1 3 29 29 H 1.09001 * 109.47409 * 119.99753 * 2 1 3 30 30 H 1.08995 * 109.47190 * 302.19021 * 5 3 2 31 31 H 1.09001 * 109.47250 * 62.19337 * 5 3 2 32 32 H 1.09000 * 109.46805 * 182.18710 * 5 3 2 33 33 H 0.97001 * 81.47040 * 335.90341 * 16 11 8 34 34 H 0.97004 * 119.99695 * 4.77470 * 17 15 14 35 35 H 0.96998 * 120.00378 * 184.77253 * 17 15 14 36 36 H 1.07995 * 126.06783 * 359.93976 * 19 18 14 37 37 H 1.09004 * 109.47276 * 90.00097 * 21 20 19 38 38 H 1.08998 * 109.47550 * 209.99608 * 21 20 19 39 39 H 1.09002 * 109.47276 * 330.00640 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8419 5 6 1.6351 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 8 3.9468 0.7240 1.2992 8 14 4.3124 0.6300 -1.3738 9 1 3.7531 -0.7372 -1.5252 10 1 5.7859 0.5465 -1.2086 11 1 3.9945 1.4317 -2.5827 12 6 4.0589 2.8647 0.2249 13 8 4.5978 3.2496 1.2407 14 7 3.9017 3.7071 -0.8154 15 6 3.1090 3.3408 -1.8882 16 7 3.0833 2.1014 -2.2853 17 7 2.3485 4.2856 -2.5351 18 6 4.5422 4.9559 -0.8101 19 6 5.5201 5.3771 0.1049 20 6 5.8847 6.6362 -0.2277 21 6 6.9091 7.4809 0.4850 22 7 5.1673 7.0024 -1.3109 23 1 5.2215 7.8561 -1.7683 24 7 4.3359 5.9315 -1.6627 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0373 1.5653 -2.1507 31 1 0.5479 2.1599 -1.3785 32 1 2.0316 3.1417 -1.3242 33 1 2.9541 1.3881 -1.6407 34 1 2.4198 5.2201 -2.2846 35 1 1.7406 4.0180 -3.2420 36 1 5.9113 4.7986 0.9286 37 1 7.8913 7.3099 0.0443 38 1 6.6448 8.5337 0.3856 39 1 6.9325 7.2102 1.5406 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184326173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 09:30:22 Heat of formation + Delta-G solvation = 382.382073 kcal Electronic energy + Delta-G solvation = -24650.864267 eV Core-core repulsion = 21226.238045 eV Total energy + Delta-G solvation = -3424.626222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.83098 -42.42939 -40.11633 -37.99553 -35.65521 -34.43160 -33.16587 -32.84957 -31.56772 -29.54009 -28.10342 -26.84849 -25.44610 -25.26285 -22.83189 -22.03809 -21.44785 -20.88253 -18.72669 -18.49950 -18.20334 -18.10278 -17.17211 -16.67916 -16.34297 -16.06320 -15.66912 -15.55812 -15.11153 -14.77125 -14.62789 -14.10756 -13.96325 -13.88319 -13.68956 -13.26988 -13.13599 -12.61782 -12.53364 -12.21561 -12.14881 -11.93935 -11.84265 -11.49957 -11.22000 -10.98113 -10.38339 -9.95520 -9.69622 -8.97369 -8.58943 -8.16074 -6.86052 -0.17832 0.53219 0.77177 1.09865 1.39966 1.54262 1.89982 2.01538 2.39902 2.93730 3.36172 3.46308 3.66888 3.81259 3.86668 4.01011 4.14307 4.24293 4.35382 4.40856 4.45640 4.55710 4.62789 4.73704 4.86783 4.88323 4.91166 4.96303 5.05052 5.12721 5.18488 5.25756 5.36127 5.53026 5.68382 5.72793 5.99831 6.27928 6.34497 6.54941 6.77363 7.06810 7.64267 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.007467 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.576617 B = 3748.900052 C = 4173.178414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.117 4.117 4 H 0.022 0.978 5 C -0.339 4.339 6 C -0.037 4.037 7 O -0.928 6.928 8 Si 0.085 3.915 9 H -0.290 1.290 10 H -0.373 1.373 11 H 0.391 0.609 12 C 0.488 3.512 13 O -0.535 6.535 14 N -0.515 5.515 15 C 0.730 3.270 16 N -0.721 5.721 17 N -0.783 5.783 18 C 0.266 3.734 19 C -0.314 4.314 20 C 0.133 3.867 21 C -0.090 4.090 22 N -0.433 5.433 23 H 0.465 0.535 24 N -0.304 5.304 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.006 0.994 30 H 0.297 0.703 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.391 0.609 34 H 0.425 0.575 35 H 0.450 0.550 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 21.976 -16.021 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C -0.137 4.137 4 H 0.040 0.960 5 C -0.395 4.395 6 C -0.137 4.137 7 O -0.873 6.873 8 Si -0.011 4.011 9 H -0.219 1.219 10 H -0.308 1.308 11 H 0.326 0.674 12 C 0.281 3.719 13 O -0.406 6.406 14 N -0.251 5.251 15 C 0.407 3.593 16 N -0.371 5.371 17 N -0.341 5.341 18 C 0.014 3.986 19 C -0.345 4.345 20 C 0.002 3.998 21 C -0.148 4.148 22 N -0.148 5.148 23 H 0.316 0.684 24 N -0.136 5.136 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.302 0.698 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.243 0.757 34 H 0.261 0.739 35 H 0.290 0.710 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.726 21.755 -17.010 28.423 hybrid contribution 1.659 -1.806 5.109 5.667 sum -5.067 19.949 -11.901 23.776 Atomic orbital electron populations 1.21786 0.91740 1.02603 1.03038 1.21334 0.98123 0.95421 0.99741 1.21853 0.95677 0.97511 0.98693 0.95956 1.31127 1.07018 0.96841 1.04522 1.25052 0.95406 0.86245 1.07045 1.94940 1.87818 1.67684 1.36876 1.04077 0.77494 0.97387 1.22133 1.21879 1.30773 0.67393 1.25486 0.77278 0.88666 0.80476 1.90362 1.42495 1.76453 1.31252 1.45204 1.45481 1.14186 1.20266 1.15489 0.80738 0.86338 0.76720 1.62069 1.35077 0.99565 1.40354 1.43154 1.38680 1.09341 1.42922 1.19597 0.95397 0.86889 0.96673 1.21366 1.06853 0.99053 1.07212 1.21384 0.95288 0.93724 0.89403 1.20680 0.95195 0.99060 0.99884 1.45709 1.31043 1.14451 1.23608 0.68412 1.76790 1.19338 0.95087 1.22404 0.91559 0.93740 0.88377 0.92609 0.97507 0.69799 0.89329 0.87455 0.75695 0.73883 0.71009 0.86343 0.88073 0.86786 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.67 71.98 0.70 -4.06 16 2 C -0.11 -5.57 4.77 30.59 0.15 -5.43 16 3 C -0.12 -6.18 1.90 -10.79 -0.02 -6.20 16 4 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 5 C -0.34 -11.36 6.07 71.15 0.43 -10.93 16 6 C -0.04 -2.51 0.62 29.85 0.02 -2.49 16 7 O -0.93 -82.22 16.28 -129.99 -2.12 -84.34 16 8 Si 0.08 5.22 21.96 68.60 1.51 6.73 16 9 H -0.29 -19.41 6.33 99.48 0.63 -18.78 16 10 H -0.37 -29.22 7.11 99.48 0.71 -28.51 16 11 H 0.39 15.40 3.35 -74.46 -0.25 15.15 16 12 C 0.49 29.89 5.92 87.66 0.52 30.40 16 13 O -0.53 -37.02 13.94 16.03 0.22 -36.79 16 14 N -0.51 -22.45 2.71 -717.23 -1.95 -24.39 16 15 C 0.73 23.01 4.27 251.78 1.07 24.08 16 16 N -0.72 -24.12 4.91 -935.75 -4.59 -28.71 16 17 N -0.78 -12.95 7.75 -255.00 -1.98 -14.92 16 18 C 0.27 10.07 7.33 133.25 0.98 11.05 16 19 C -0.31 -12.24 9.47 22.10 0.21 -12.03 16 20 C 0.13 3.21 7.20 41.38 0.30 3.51 16 21 C -0.09 -1.24 10.43 71.23 0.74 -0.49 16 22 N -0.43 -7.97 7.35 -48.04 -0.35 -8.33 16 23 H 0.47 3.63 8.96 -213.34 -1.91 1.71 16 24 N -0.30 -7.79 10.24 -54.34 -0.56 -8.34 16 25 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.10 2.59 6.61 -2.39 -0.02 2.57 16 28 H 0.06 2.83 5.94 -2.39 -0.01 2.82 16 29 H 0.01 0.38 7.42 -2.39 -0.02 0.37 16 30 H 0.30 8.98 3.71 -174.75 -0.65 8.33 16 31 H 0.09 2.19 6.67 -2.39 -0.02 2.18 16 32 H 0.11 3.44 1.99 -142.29 -0.28 3.16 16 33 H 0.39 17.02 0.03 -148.70 0.00 17.02 16 34 H 0.42 6.60 6.61 -92.71 -0.61 5.98 16 35 H 0.45 3.21 8.87 -92.71 -0.82 2.39 16 36 H 0.12 5.79 6.25 -2.91 -0.02 5.77 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -135.55 281.48 -8.12 -143.67 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -3.39 Total: 28.03 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 5.09 Total: 27.41 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -9.43 Total: -84.70 kcal Atomic # 8 Polarization: -119.24 SS G_CDS: -1.89 Total: -121.13 kcal Atomic # 14 Polarization: 5.22 SS G_CDS: 1.51 Total: 6.73 kcal Total: -135.55 -8.12 -143.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184326173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 526.047 kcal (2) G-P(sol) polarization free energy of solvation -135.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 390.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -143.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 382.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds