Wall clock time and date at job start Tue Mar 24 2020 09:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46951 * 2 1 4 4 H 1.08999 * 109.46724 * 54.99946 * 3 2 1 5 5 C 1.53001 * 109.47004 * 295.00246 * 3 2 1 6 6 C 1.52991 * 109.46984 * 175.00045 * 3 2 1 7 7 O 1.42898 * 109.47549 * 326.44186 * 6 3 2 8 8 Si 1.86299 * 109.47342 * 86.44688 * 6 3 2 9 9 H 1.48497 * 109.47062 * 229.25857 * 8 6 3 10 10 H 1.48502 * 109.46979 * 349.25803 * 8 6 3 11 11 H 1.48505 * 109.47088 * 109.25940 * 8 6 3 12 12 C 1.50703 * 109.47134 * 206.44633 * 6 3 2 13 13 O 1.21264 * 120.00305 * 113.75889 * 12 6 3 14 14 N 1.34777 * 119.99983 * 293.75954 * 12 6 3 15 15 C 1.38339 * 120.00022 * 311.59689 * 14 12 6 16 16 N 1.30166 * 120.00331 * 99.08912 * 15 14 12 17 17 N 1.37460 * 119.99431 * 279.09164 * 15 14 12 18 18 C 1.40262 * 120.00076 * 131.59512 * 14 12 6 19 19 C 1.38776 * 120.07474 * 89.99895 * 18 14 12 20 20 C 1.38144 * 119.95510 * 179.97438 * 19 18 14 21 21 C 1.38283 * 120.10955 * 0.02562 * 20 19 18 22 22 C 1.38254 * 120.15428 * 0.02562 * 21 20 19 23 23 C 1.38329 * 120.03901 * 359.95390 * 22 21 20 24 24 F 1.35095 * 120.05601 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47362 * 300.00012 * 1 2 3 27 27 H 1.08998 * 109.47378 * 60.00182 * 1 2 3 28 28 H 1.08994 * 109.47220 * 240.00365 * 2 1 3 29 29 H 1.09003 * 109.47251 * 119.99369 * 2 1 3 30 30 H 1.09000 * 109.46821 * 175.58223 * 5 3 2 31 31 H 1.09001 * 109.46906 * 295.57647 * 5 3 2 32 32 H 1.09000 * 109.47117 * 55.57701 * 5 3 2 33 33 H 0.96997 * 120.00510 * 212.42152 * 16 15 14 34 34 H 0.96993 * 120.00277 * 359.97438 * 17 15 14 35 35 H 0.96996 * 119.99441 * 179.97438 * 17 15 14 36 36 H 1.08005 * 120.02231 * 0.25659 * 19 18 14 37 37 H 1.08000 * 119.94187 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.92235 * 179.97438 * 21 20 19 39 39 H 1.07990 * 119.98187 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1257 7 8 3.9770 0.3444 0.9393 8 14 4.3275 1.2854 -1.5665 9 1 5.3572 0.2156 -1.5467 10 1 3.2737 0.9401 -2.5541 11 1 4.9599 2.5740 -1.9475 12 6 4.0148 2.7350 0.7604 13 8 4.5273 2.7239 1.8594 14 7 3.8479 3.9017 0.1066 15 6 4.2379 4.0155 -1.2158 16 7 3.3547 3.9106 -2.1662 17 7 5.5582 4.2394 -1.5260 18 6 3.2786 5.0004 0.7669 19 6 4.0884 5.8991 1.4469 20 6 3.5252 6.9807 2.0960 21 6 2.1555 7.1693 2.0697 22 6 1.3444 6.2762 1.3945 23 6 1.9018 5.1912 0.7421 24 9 1.1094 4.3180 0.0827 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 1.9294 3.1756 -1.2748 31 1 2.1327 1.6355 -2.1436 32 1 0.5549 2.0560 -1.4350 33 1 3.6055 3.5275 -3.0213 34 1 6.2162 4.3179 -0.8178 35 1 5.8317 4.3188 -2.4532 36 1 5.1588 5.7555 1.4648 37 1 4.1556 7.6797 2.6255 38 1 1.7184 8.0156 2.5785 39 1 0.2751 6.4259 1.3762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184322797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 09:47:04 Heat of formation + Delta-G solvation = 5.638956 kcal Electronic energy + Delta-G solvation = -26473.071309 eV Core-core repulsion = 22720.817604 eV Total energy + Delta-G solvation = -3752.253705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.36980 -40.25841 -38.18860 -36.92394 -35.38618 -33.63483 -30.94943 -30.50758 -30.33795 -29.18127 -28.21435 -24.42340 -23.19180 -22.82330 -22.34105 -21.14764 -19.11110 -18.22189 -17.55585 -17.08526 -16.76263 -16.45399 -15.95586 -15.17028 -14.84424 -14.78098 -14.21141 -13.87834 -13.76036 -13.62236 -13.30646 -12.94477 -12.37339 -12.23641 -12.11826 -11.99507 -11.71462 -11.32437 -11.15057 -10.93815 -10.75935 -10.11413 -9.73189 -9.36964 -9.28752 -9.02655 -8.98483 -8.79566 -8.75271 -8.55274 -8.36894 -8.10292 -7.61641 -5.74511 -5.24998 1.30061 1.40260 2.51764 3.04721 3.22727 3.38694 3.49074 3.72992 3.83304 4.48623 4.57269 4.72055 4.95369 5.07150 5.35844 5.50833 5.72888 5.99824 6.10914 6.17719 6.19924 6.25760 6.29196 6.46157 6.49399 6.56757 6.67940 6.80377 6.86093 6.86161 6.91117 7.17795 7.26140 7.28524 7.40932 7.62132 7.66651 7.75460 7.81299 8.05294 8.39048 8.86603 9.01718 10.09991 Molecular weight = 296.13amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.008919 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.610763 B = 3138.596093 C = 3688.592188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.080 4.080 4 H 0.044 0.956 5 C -0.213 4.213 6 C 0.007 3.993 7 O -0.821 6.821 8 Si 0.872 3.128 9 H -0.310 1.310 10 H -0.258 1.258 11 H -0.248 1.248 12 C 0.519 3.481 13 O -0.487 6.487 14 N -0.577 5.577 15 C 0.674 3.326 16 N -0.777 5.777 17 N -0.870 5.870 18 C 0.118 3.882 19 C -0.082 4.082 20 C -0.134 4.134 21 C -0.094 4.094 22 C -0.160 4.160 23 C 0.118 3.882 24 F -0.109 7.109 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.345 0.655 34 H 0.389 0.611 35 H 0.402 0.598 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 14.017 -3.504 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.100 4.100 4 H 0.062 0.938 5 C -0.269 4.269 6 C -0.097 4.097 7 O -0.764 6.764 8 Si 0.705 3.295 9 H -0.240 1.240 10 H -0.185 1.185 11 H -0.176 1.176 12 C 0.314 3.686 13 O -0.353 6.353 14 N -0.322 5.322 15 C 0.309 3.691 16 N -0.423 5.423 17 N -0.427 5.427 18 C 0.026 3.974 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.112 4.112 22 C -0.180 4.180 23 C 0.097 3.903 24 F -0.087 7.087 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.167 0.833 34 H 0.217 0.783 35 H 0.234 0.766 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.103 13.729 -3.477 14.317 hybrid contribution 0.952 -0.285 -0.398 1.070 sum -1.151 13.443 -3.875 14.038 Atomic orbital electron populations 1.21884 0.98432 0.99603 1.00701 1.21250 0.92024 0.97936 1.02247 1.21321 0.97610 0.94685 0.96377 0.93800 1.23424 0.99099 1.06929 0.97433 1.23819 0.93396 0.89669 1.02828 1.95028 1.84913 1.34954 1.61513 0.88589 0.79298 0.79199 0.82374 1.23983 1.18527 1.17561 1.25627 0.73478 0.83563 0.85908 1.90427 1.36113 1.85740 1.23051 1.43456 1.68418 1.11579 1.08743 1.17850 0.79663 0.86017 0.85546 1.69301 1.35885 1.29277 1.07827 1.44547 1.08731 1.78332 1.11044 1.17665 0.89935 0.90575 0.99192 1.21392 1.00287 0.93035 0.95515 1.21027 0.95134 0.98230 1.00913 1.20963 0.93433 0.98626 0.98155 1.21085 1.01049 0.95035 1.00803 1.18158 0.88102 0.89398 0.94633 1.91578 1.72933 1.66737 1.77486 0.94306 0.93767 0.93436 0.94097 0.90476 0.85393 0.92875 0.95346 0.83313 0.78251 0.76611 0.85192 0.85426 0.85251 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.67 37.16 0.36 -2.66 16 2 C -0.10 -2.45 4.84 -26.73 -0.13 -2.58 16 3 C -0.08 -2.10 1.88 -90.62 -0.17 -2.27 16 4 H 0.04 1.19 7.32 -51.93 -0.38 0.80 16 5 C -0.21 -4.85 6.02 37.16 0.22 -4.63 16 6 C 0.01 0.22 0.63 -27.89 -0.02 0.20 16 7 O -0.82 -29.39 15.48 -55.07 -0.85 -30.24 16 8 Si 0.87 21.77 20.59 -169.99 -3.50 18.28 16 9 H -0.31 -8.89 7.11 56.52 0.40 -8.49 16 10 H -0.26 -6.15 5.17 56.52 0.29 -5.86 16 11 H -0.25 -4.91 2.21 52.81 0.12 -4.80 16 12 C 0.52 13.96 5.33 -10.98 -0.06 13.90 16 13 O -0.49 -14.56 17.07 -14.26 -0.24 -14.81 16 14 N -0.58 -12.39 1.79 -62.47 -0.11 -12.50 16 15 C 0.67 12.68 4.05 -319.11 -1.29 11.39 16 16 N -0.78 -14.48 8.91 28.94 0.26 -14.22 16 17 N -0.87 -12.79 7.42 28.94 0.21 -12.57 16 18 C 0.12 2.27 4.83 -83.51 -0.40 1.86 16 19 C -0.08 -1.31 9.97 -39.42 -0.39 -1.70 16 20 C -0.13 -1.69 10.04 -39.60 -0.40 -2.09 16 21 C -0.09 -1.12 10.04 -39.56 -0.40 -1.52 16 22 C -0.16 -2.27 10.02 -39.54 -0.40 -2.67 16 23 C 0.12 2.16 7.31 -39.26 -0.29 1.87 16 24 F -0.11 -2.20 12.71 2.25 0.03 -2.17 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.90 6.47 -51.93 -0.34 0.57 16 28 H 0.04 1.03 7.58 -51.93 -0.39 0.64 16 29 H 0.08 2.18 7.07 -51.93 -0.37 1.81 16 30 H 0.13 2.82 1.82 -51.93 -0.09 2.73 16 31 H 0.05 1.23 3.99 -51.93 -0.21 1.02 16 32 H 0.03 0.60 6.37 -51.93 -0.33 0.27 16 33 H 0.35 5.87 7.61 -40.82 -0.31 5.56 16 34 H 0.39 5.39 8.95 -40.82 -0.37 5.03 16 35 H 0.40 4.68 8.86 -40.82 -0.36 4.32 16 36 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -38.25 297.64 -7.95 -46.20 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.87 Total: 8.43 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -3.36 Total: 9.12 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.36 Total: -39.30 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.10 Total: -45.05 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -3.50 Total: 18.28 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -38.25 -7.95 -46.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184322797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.843 kcal (2) G-P(sol) polarization free energy of solvation -38.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds