Wall clock time and date at job start Tue Mar 24 2020 10:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00157 * 2 1 4 4 C 1.38235 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.00082 * 359.95240 * 4 3 2 6 6 C 1.50704 * 120.00138 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.47040 * 209.99965 * 6 5 4 8 8 Si 1.86295 * 109.46927 * 329.99821 * 6 5 4 9 9 H 1.48500 * 109.46900 * 180.02562 * 8 6 5 10 10 H 1.48496 * 109.47682 * 299.99980 * 8 6 5 11 11 H 1.48502 * 109.47014 * 60.00430 * 8 6 5 12 12 C 1.50698 * 109.47095 * 90.00320 * 6 5 4 13 13 O 1.21283 * 120.00472 * 125.00160 * 12 6 5 14 14 N 1.34777 * 119.99538 * 304.99497 * 12 6 5 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 6 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 H 1.09006 * 109.52063 * 54.87279 * 16 15 14 18 18 C 1.53120 * 109.52568 * 174.99741 * 16 15 14 19 19 C 1.53036 * 109.27970 * 177.55627 * 18 16 15 20 20 N 1.46844 * 109.52514 * 300.82313 * 19 18 16 21 21 C 1.46892 * 111.00109 * 185.83640 * 20 19 18 22 22 C 1.47199 * 109.47672 * 170.00207 * 21 20 19 23 23 N 9.48851 * 124.01573 * 228.88056 * 4 1 2 24 24 C 1.46849 * 111.19528 * 61.74373 * 20 19 18 25 25 C 1.53042 * 109.52478 * 298.25304 * 24 20 19 26 26 C 1.38234 * 119.99915 * 0.27860 * 5 4 3 27 27 C 1.38232 * 119.99977 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47159 * 90.00159 * 1 2 3 29 29 H 1.09004 * 109.47402 * 210.00703 * 1 2 3 30 30 H 1.09000 * 109.47281 * 330.00445 * 1 2 3 31 31 H 1.08004 * 120.00182 * 359.96915 * 3 2 1 32 32 H 1.08000 * 120.00152 * 179.97438 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 14 12 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 35 35 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 36 36 H 1.08997 * 109.50597 * 297.50715 * 18 16 15 37 37 H 1.09010 * 109.49608 * 57.61795 * 18 16 15 38 38 H 1.08996 * 109.45914 * 60.83994 * 19 18 16 39 39 H 1.08997 * 109.45953 * 180.80784 * 19 18 16 40 40 H 1.09006 * 109.47241 * 290.00364 * 21 20 19 41 41 H 1.09002 * 109.47091 * 50.00262 * 21 20 19 42 42 H 1.08998 * 109.46352 * 58.26968 * 24 20 19 43 43 H 1.08998 * 109.46115 * 178.25531 * 24 20 19 44 44 H 1.09005 * 109.50311 * 299.24518 * 25 24 20 45 45 H 1.08998 * 109.50800 * 179.12367 * 25 24 20 46 46 H 1.08005 * 120.00491 * 179.73064 * 26 5 4 47 47 H 1.08003 * 120.00296 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7787 -0.0001 0.0032 7 8 6.2555 -1.1674 -0.6691 8 14 6.4003 1.5203 -0.8758 9 1 7.8853 1.5199 -0.8752 10 1 5.9065 1.5192 -2.2762 11 1 5.9048 2.7334 -0.1771 12 6 6.2799 0.0010 1.4244 13 8 7.0498 -0.8590 1.7967 14 7 5.8727 0.9579 2.2818 15 6 6.3553 0.9556 3.6650 16 6 5.7403 2.1346 4.4217 17 1 4.6542 2.0940 4.3389 18 6 6.1440 2.0624 5.8970 19 6 5.5768 3.2766 6.6360 20 7 6.0961 4.5080 6.0277 21 6 5.6834 5.6897 6.7965 22 6 6.4099 6.8724 6.3065 23 7 6.9747 7.7828 5.9284 24 6 5.6812 4.6225 4.6237 25 6 6.2516 3.4486 3.8244 26 6 3.5805 -1.1972 -0.0028 27 6 2.1981 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0005 32 1 4.1205 2.1323 0.0001 33 1 5.2568 1.6457 1.9842 34 1 6.0662 0.0226 4.1491 35 1 7.4414 1.0467 3.6711 36 1 5.7462 1.1489 6.3389 37 1 7.2311 2.0627 5.9772 38 1 4.4891 3.2681 6.5671 39 1 5.8746 3.2356 7.6838 40 1 4.6114 5.8458 6.6753 41 1 5.9110 5.5346 7.8512 42 1 4.5930 4.6077 4.5642 43 1 6.0550 5.5590 4.2097 44 1 7.3403 3.4706 3.8721 45 1 5.9306 3.5253 2.7856 46 1 4.1204 -2.1326 -0.0060 47 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:24:13 Heat of formation + Delta-G solvation = -47.857343 kcal Electronic energy + Delta-G solvation = -28406.147616 eV Core-core repulsion = 24553.500595 eV Total energy + Delta-G solvation = -3852.647022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.73323 -38.87621 -37.87625 -36.77480 -35.05140 -33.23592 -32.43110 -31.05750 -30.29430 -29.99001 -28.74114 -26.58127 -25.54177 -23.51804 -23.18053 -21.83409 -21.59588 -20.25167 -19.91178 -18.73297 -17.96228 -16.56825 -16.01801 -15.71707 -15.24851 -15.05094 -14.78501 -14.64708 -14.51163 -14.23689 -14.04705 -13.55601 -13.45964 -13.33762 -13.25680 -13.18853 -12.71617 -12.63111 -12.49255 -12.37497 -12.29430 -12.05278 -11.92960 -11.79372 -11.48574 -11.36348 -11.19309 -10.69837 -10.59995 -10.45032 -10.40806 -10.32673 -10.26492 -9.81373 -9.49550 -8.82046 -8.74547 -8.13282 -8.08292 -7.54956 -5.96033 -5.43608 2.13425 2.23432 2.30999 2.50009 3.20882 3.35066 3.42500 3.51809 3.78001 3.95293 4.16954 4.53626 4.55321 4.63088 4.69697 4.79618 4.85293 4.91358 5.05248 5.19416 5.21096 5.36864 5.39472 5.43877 5.50878 5.58114 5.69283 5.70769 5.79361 5.80332 5.87254 5.89761 6.07619 6.09548 6.14216 6.18163 6.22262 6.39661 6.40046 6.54672 6.57157 6.64191 6.83032 6.89916 6.94253 7.25663 7.27253 7.39473 7.44082 7.73100 7.92585 8.57665 9.48634 10.01182 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.003464 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.813515 B = 8080.544878 C = 8778.661148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.123 4.123 4 C -0.156 4.156 5 C -0.058 4.058 6 C 0.025 3.975 7 O -0.812 6.812 8 Si 0.930 3.070 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.296 1.296 12 C 0.491 3.509 13 O -0.536 6.536 14 N -0.749 5.749 15 C 0.124 3.876 16 C -0.101 4.101 17 H 0.075 0.925 18 C -0.109 4.109 19 C 0.061 3.939 20 N -0.536 5.536 21 C 0.148 3.852 22 C 0.213 3.787 23 N -0.428 5.428 24 C 0.052 3.948 25 C -0.115 4.115 26 C -0.079 4.079 27 C -0.129 4.129 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.390 0.610 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 10.489 14.630 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.121 4.121 3 C -0.142 4.142 4 C -0.174 4.174 5 C -0.059 4.059 6 C -0.079 4.079 7 O -0.755 6.755 8 Si 0.758 3.242 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.226 1.226 12 C 0.281 3.719 13 O -0.411 6.411 14 N -0.407 5.407 15 C -0.001 4.001 16 C -0.119 4.119 17 H 0.093 0.907 18 C -0.148 4.148 19 C -0.066 4.066 20 N -0.262 5.262 21 C 0.017 3.983 22 C -0.106 4.106 23 N -0.105 5.105 24 C -0.075 4.075 25 C -0.152 4.152 26 C -0.097 4.097 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.224 0.776 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.146 0.854 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.563 11.589 13.742 19.502 hybrid contribution -1.470 -0.045 0.102 1.474 sum -9.033 11.544 13.844 20.162 Atomic orbital electron populations 1.20659 0.92319 1.01675 1.01358 1.19669 0.95049 0.93543 1.03796 1.20752 0.93995 0.96631 1.02776 1.21216 0.94213 0.98125 1.03808 1.21465 0.99393 0.92051 0.93033 1.22554 0.88594 1.07069 0.89677 1.95078 1.81202 1.30429 1.68809 0.86614 0.80230 0.75033 0.82290 1.20468 1.19589 1.22593 1.23705 0.80053 0.79088 0.89079 1.90447 1.35304 1.37222 1.78143 1.46639 1.50963 1.32640 1.10501 1.21185 0.98614 0.96805 0.83452 1.21463 1.00651 0.94848 0.94983 0.90673 1.21575 1.02325 0.96704 0.94147 1.22113 0.97441 0.88469 0.98618 1.61879 1.60761 1.00955 1.02621 1.19519 0.96275 0.83411 0.99081 1.28989 0.93718 0.94254 0.93631 1.81240 1.09009 1.12177 1.08108 1.22227 0.98242 0.99750 0.87305 1.21681 1.02007 0.92705 0.98843 1.21108 0.92398 0.99633 0.96580 1.21021 0.94567 0.96678 1.02406 0.92143 0.92335 0.92408 0.87304 0.86630 0.77574 0.92374 0.92306 0.90709 0.90494 0.94028 0.90034 0.90163 0.86273 0.93897 0.90926 0.90570 0.90793 0.85382 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.01 36.00 0.36 -0.95 16 2 C -0.12 -2.05 5.88 -104.63 -0.62 -2.67 16 3 C -0.12 -2.13 9.70 -39.59 -0.38 -2.52 16 4 C -0.16 -3.13 7.64 -39.59 -0.30 -3.43 16 5 C -0.06 -1.41 4.39 -104.62 -0.46 -1.87 16 6 C 0.02 0.70 0.70 -29.03 -0.02 0.68 16 7 O -0.81 -28.53 16.18 -55.09 -0.89 -29.42 16 8 Si 0.93 23.08 24.29 -169.99 -4.13 18.95 16 9 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.30 -6.01 6.38 56.52 0.36 -5.65 16 12 C 0.49 13.03 5.95 -10.99 -0.07 12.97 16 13 O -0.54 -16.39 16.51 -14.30 -0.24 -16.62 16 14 N -0.75 -15.02 4.85 -60.29 -0.29 -15.31 16 15 C 0.12 2.01 5.07 -4.04 -0.02 1.99 16 16 C -0.10 -1.14 2.29 -90.49 -0.21 -1.35 16 17 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.11 -0.96 5.38 -26.65 -0.14 -1.11 16 19 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 20 N -0.54 -4.13 4.63 -238.19 -1.10 -5.24 16 21 C 0.15 0.79 5.46 -6.62 -0.04 0.75 16 22 C 0.21 1.94 14.43 -20.76 -0.30 1.64 16 23 N -0.43 -5.32 18.54 42.16 0.78 -4.54 16 24 C 0.05 0.48 5.30 -3.83 -0.02 0.46 16 25 C -0.11 -1.30 5.22 -26.65 -0.14 -1.44 16 26 C -0.08 -1.88 9.35 -39.58 -0.37 -2.25 16 27 C -0.13 -2.47 9.70 -39.58 -0.38 -2.85 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.12 2.14 5.26 -52.49 -0.28 1.86 16 33 H 0.39 6.99 5.94 -40.82 -0.24 6.75 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.39 8.02 -51.93 -0.42 -0.03 16 40 H 0.08 0.28 8.12 -51.93 -0.42 -0.15 16 41 H 0.12 0.33 7.99 -51.93 -0.41 -0.08 16 42 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.72 7.11 -51.93 -0.37 0.35 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.91 7.27 -51.93 -0.38 0.53 16 46 H 0.13 3.36 7.48 -52.48 -0.39 2.97 16 47 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -38.74 380.28 -10.51 -49.25 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.24 Total: -1.22 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.13 Total: -1.58 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: -0.61 Total: -25.09 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.13 Total: -46.04 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.13 Total: 18.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.74 -10.51 -49.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -38.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds