Wall clock time and date at job start Tue Mar 24 2020 10:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 120.00196 * 2 1 4 4 C 1.38235 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00309 * 179.97438 * 5 4 3 7 7 O 1.42909 * 109.46851 * 334.99882 * 6 5 4 8 8 Si 1.86298 * 109.47339 * 215.00306 * 6 5 4 9 9 H 1.48503 * 109.47457 * 59.99781 * 8 6 5 10 10 H 1.48496 * 109.47322 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46964 * 299.99781 * 8 6 5 12 12 C 1.50695 * 109.47491 * 94.99850 * 6 5 4 13 13 O 1.21280 * 120.00451 * 240.00524 * 12 6 5 14 14 N 1.34781 * 119.99631 * 59.99861 * 12 6 5 15 15 C 1.46498 * 119.99869 * 180.02562 * 14 12 6 16 16 C 1.52995 * 109.47327 * 180.02562 * 15 14 12 17 17 H 1.09007 * 109.52312 * 54.87714 * 16 15 14 18 18 C 1.53117 * 109.52523 * 175.00052 * 16 15 14 19 19 C 1.53043 * 109.28064 * 177.56087 * 18 16 15 20 20 N 1.46849 * 109.52074 * 300.82273 * 19 18 16 21 21 C 1.46897 * 110.99873 * 185.83658 * 20 19 18 22 22 C 1.47198 * 109.47499 * 169.99931 * 21 20 19 23 23 N 8.84645 * 89.58541 * 122.09845 * 2 1 3 24 24 C 1.46851 * 111.19771 * 61.74323 * 20 19 18 25 25 C 1.53040 * 109.51825 * 298.25216 * 24 20 19 26 26 C 1.38243 * 120.00092 * 359.97438 * 5 4 3 27 27 C 1.38234 * 119.99618 * 359.97438 * 26 5 4 28 28 H 1.08998 * 109.46567 * 90.00200 * 1 2 3 29 29 H 1.08998 * 109.47268 * 210.00355 * 1 2 3 30 30 H 1.08998 * 109.47151 * 330.00502 * 1 2 3 31 31 H 1.08000 * 119.99516 * 0.24808 * 3 2 1 32 32 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00294 * 0.02562 * 14 12 6 34 34 H 1.09001 * 109.47404 * 300.00324 * 15 14 12 35 35 H 1.09005 * 109.47341 * 60.00440 * 15 14 12 36 36 H 1.09004 * 109.50336 * 297.50288 * 18 16 15 37 37 H 1.09000 * 109.50516 * 57.58665 * 18 16 15 38 38 H 1.09000 * 109.45956 * 60.83680 * 19 18 16 39 39 H 1.08995 * 109.46086 * 180.81503 * 19 18 16 40 40 H 1.09001 * 109.47317 * 290.00287 * 21 20 19 41 41 H 1.09004 * 109.46991 * 49.99742 * 21 20 19 42 42 H 1.08996 * 109.46507 * 58.27503 * 24 20 19 43 43 H 1.09004 * 109.45838 * 178.24232 * 24 20 19 44 44 H 1.08989 * 109.50617 * 299.23870 * 25 24 20 45 45 H 1.09006 * 109.49564 * 179.11994 * 25 24 20 46 46 H 1.07999 * 120.00235 * 179.97438 * 26 5 4 47 47 H 1.08005 * 119.99804 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2718 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0016 7 8 6.2551 1.2204 -0.5689 8 14 6.3997 -1.4398 -1.0046 9 1 5.9047 -1.3191 -2.3995 10 1 7.8846 -1.4403 -1.0041 11 1 5.9047 -2.7082 -0.4118 12 6 6.2811 -0.1227 1.4170 13 8 6.9784 0.7492 1.8907 14 7 5.9554 -1.2014 2.1566 15 6 6.4433 -1.3203 3.5329 16 6 5.9339 -2.6274 4.1435 17 1 6.2207 -3.4635 3.5056 18 6 6.5434 -2.8135 5.5357 19 6 5.9834 -4.0909 6.1658 20 7 4.5214 -3.9909 6.2611 21 6 3.9614 -5.1390 6.9865 22 6 2.5387 -4.8923 7.2724 23 7 1.4430 -4.7007 7.4940 24 6 3.9104 -3.8591 4.9323 25 6 4.4085 -2.5748 4.2655 26 6 3.5805 -1.1973 0.0027 27 6 2.1982 -1.1972 0.0032 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6582 2.1324 0.0040 32 1 4.1206 2.1324 0.0001 33 1 5.3980 -1.8989 1.7777 34 1 7.5333 -1.3201 3.5333 35 1 6.0796 -0.4780 4.1214 36 1 7.6271 -2.8945 5.4507 37 1 6.2903 -1.9575 6.1612 38 1 6.2492 -4.9478 5.5468 39 1 6.4044 -4.2186 7.1630 40 1 4.0591 -6.0370 6.3764 41 1 4.5019 -5.2757 7.9232 42 1 4.1859 -4.7172 4.3192 43 1 2.8259 -3.8186 5.0337 44 1 4.1213 -1.7154 4.8711 45 1 3.9669 -2.4853 3.2730 46 1 4.1205 -2.1326 0.0031 47 1 1.6582 -2.1326 0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:24:18 Heat of formation + Delta-G solvation = -47.526916 kcal Electronic energy + Delta-G solvation = -28587.904740 eV Core-core repulsion = 24735.272047 eV Total energy + Delta-G solvation = -3852.632693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72838 -38.85504 -37.86692 -36.79759 -35.05506 -33.20708 -32.44256 -31.04486 -30.27722 -29.96242 -28.73610 -26.56261 -25.53655 -23.51341 -23.17106 -21.77853 -21.59764 -20.21322 -19.91500 -18.74235 -17.95137 -16.55959 -15.96199 -15.71816 -15.25721 -15.12536 -14.75015 -14.59843 -14.44310 -14.19450 -14.11062 -13.53046 -13.44458 -13.34179 -13.28442 -13.14611 -12.69216 -12.60604 -12.53385 -12.39842 -12.14668 -12.10862 -11.90422 -11.82403 -11.43779 -11.35409 -11.17160 -10.69355 -10.58218 -10.45874 -10.38169 -10.33606 -10.27088 -9.80669 -9.50024 -8.81277 -8.73767 -8.11316 -8.07373 -7.51966 -5.96108 -5.42840 2.15549 2.26396 2.33109 2.52192 3.19200 3.33843 3.41808 3.52902 3.79266 3.95123 4.16693 4.54037 4.55168 4.64289 4.70518 4.81209 4.85975 4.91422 5.06065 5.19918 5.21909 5.37250 5.42356 5.47160 5.50882 5.59044 5.69134 5.73725 5.80827 5.82643 5.90373 5.91255 6.08191 6.13016 6.16406 6.21279 6.22716 6.39083 6.43849 6.57567 6.58637 6.65344 6.84372 6.91608 6.97411 7.28178 7.28427 7.42099 7.44401 7.76317 7.96001 8.56948 9.48319 10.01764 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.004051 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.112285 B = 6909.670761 C = 8649.510543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.078 4.078 5 C -0.060 4.060 6 C 0.025 3.975 7 O -0.812 6.812 8 Si 0.930 3.070 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.297 1.297 12 C 0.492 3.508 13 O -0.535 6.535 14 N -0.750 5.750 15 C 0.124 3.876 16 C -0.101 4.101 17 H 0.073 0.927 18 C -0.109 4.109 19 C 0.061 3.939 20 N -0.536 5.536 21 C 0.147 3.853 22 C 0.213 3.787 23 N -0.427 5.427 24 C 0.052 3.948 25 C -0.112 4.112 26 C -0.153 4.153 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.390 0.610 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -15.002 11.511 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.148 4.148 4 C -0.096 4.096 5 C -0.061 4.061 6 C -0.079 4.079 7 O -0.756 6.756 8 Si 0.758 3.242 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.227 1.227 12 C 0.281 3.719 13 O -0.410 6.410 14 N -0.408 5.408 15 C -0.001 4.001 16 C -0.120 4.120 17 H 0.092 0.908 18 C -0.148 4.148 19 C -0.066 4.066 20 N -0.262 5.262 21 C 0.017 3.983 22 C -0.106 4.106 23 N -0.105 5.105 24 C -0.075 4.075 25 C -0.150 4.150 26 C -0.171 4.171 27 C -0.142 4.142 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.224 0.776 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.132 0.868 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.484 -14.001 11.813 19.122 hybrid contribution 0.206 -1.057 -0.555 1.211 sum -5.278 -15.057 11.258 19.528 Atomic orbital electron populations 1.20663 0.92350 1.01717 1.01321 1.19673 0.95033 0.93553 1.03666 1.21032 0.94605 0.96678 1.02445 1.21132 0.92330 0.99785 0.96345 1.21425 0.99285 0.92062 0.93324 1.22538 0.88735 1.06784 0.89844 1.95071 1.81295 1.24819 1.74381 0.86633 0.80144 0.74439 0.82944 1.19643 1.20459 1.22684 1.23705 0.79186 0.79388 0.89581 1.90445 1.37790 1.40176 1.72602 1.46670 1.55693 1.25241 1.13241 1.21185 0.98610 0.95927 0.84335 1.21471 0.95599 0.98338 0.96616 0.90815 1.21577 0.99794 0.97809 0.95584 1.22113 0.85479 0.97949 1.01100 1.61883 1.06015 1.39235 1.19066 1.19520 0.83629 0.93820 1.01355 1.28897 0.94816 0.93413 0.93445 1.81157 1.13039 1.07588 1.08690 1.22231 0.99099 0.98332 0.87838 1.21653 0.95019 0.97316 1.01017 1.21179 0.94151 0.98035 1.03766 1.20746 0.93999 0.96610 1.02886 0.92153 0.92406 0.92332 0.87287 0.85192 0.77619 0.92400 0.92252 0.90742 0.90472 0.94071 0.90045 0.90201 0.86301 0.93998 0.90902 0.90612 0.90620 0.86751 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.01 36.01 0.36 -1.02 16 2 C -0.12 -2.09 5.88 -104.62 -0.62 -2.71 16 3 C -0.13 -2.55 9.70 -39.58 -0.38 -2.93 16 4 C -0.08 -1.88 9.35 -39.59 -0.37 -2.25 16 5 C -0.06 -1.46 4.45 -104.63 -0.47 -1.93 16 6 C 0.02 0.69 0.72 -29.04 -0.02 0.67 16 7 O -0.81 -28.47 16.04 -55.14 -0.88 -29.35 16 8 Si 0.93 22.78 24.19 -169.99 -4.11 18.67 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.30 -5.93 6.36 56.52 0.36 -5.57 16 12 C 0.49 13.04 6.00 -10.99 -0.07 12.97 16 13 O -0.54 -16.36 16.50 -14.35 -0.24 -16.60 16 14 N -0.75 -15.01 4.83 -60.30 -0.29 -15.30 16 15 C 0.12 2.01 5.07 -4.05 -0.02 1.99 16 16 C -0.10 -1.15 2.29 -90.50 -0.21 -1.36 16 17 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.11 -0.96 5.38 -26.65 -0.14 -1.11 16 19 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 20 N -0.54 -4.15 4.63 -238.17 -1.10 -5.26 16 21 C 0.15 0.79 5.46 -6.61 -0.04 0.76 16 22 C 0.21 1.95 14.42 -20.82 -0.30 1.65 16 23 N -0.43 -5.34 18.52 42.08 0.78 -4.56 16 24 C 0.05 0.48 5.30 -3.83 -0.02 0.46 16 25 C -0.11 -1.28 5.22 -26.65 -0.14 -1.42 16 26 C -0.15 -3.09 7.75 -39.58 -0.31 -3.40 16 27 C -0.12 -2.19 9.70 -39.58 -0.38 -2.57 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.13 3.47 7.35 -52.49 -0.39 3.09 16 33 H 0.39 6.96 5.46 -40.82 -0.22 6.74 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.39 8.01 -51.93 -0.42 -0.03 16 40 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 41 H 0.12 0.34 7.99 -51.93 -0.41 -0.08 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.73 7.11 -51.93 -0.37 0.36 16 44 H 0.08 0.96 8.14 -51.94 -0.42 0.54 16 45 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 46 H 0.11 2.09 5.13 -52.49 -0.27 1.82 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -38.64 379.47 -10.48 -49.12 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.21 Total: -0.62 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.14 Total: -1.81 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: -0.62 Total: -25.12 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -1.12 Total: -45.95 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.11 Total: 18.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.64 -10.48 -49.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.589 kcal (2) G-P(sol) polarization free energy of solvation -38.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds