Wall clock time and date at job start Tue Mar 24 2020 10:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47051 * 210.00445 * 6 5 4 8 8 Si 1.86299 * 109.46790 * 330.00379 * 6 5 4 9 9 H 1.48495 * 109.47154 * 59.99863 * 8 6 5 10 10 H 1.48506 * 109.46756 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47246 * 299.99605 * 8 6 5 12 12 C 1.50703 * 109.46655 * 90.00209 * 6 5 4 13 13 O 1.21284 * 119.99820 * 125.00398 * 12 6 5 14 14 N 1.34773 * 120.00113 * 305.00088 * 12 6 5 15 15 C 1.46503 * 119.99943 * 180.02562 * 14 12 6 16 16 C 1.52999 * 109.47182 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.52291 * 54.87238 * 16 15 14 18 18 C 1.53119 * 109.52223 * 174.99730 * 16 15 14 19 19 C 1.53038 * 109.27779 * 62.25285 * 18 16 15 20 20 N 1.46850 * 109.52518 * 59.17582 * 19 18 16 21 21 C 1.46896 * 111.00117 * 174.16007 * 20 19 18 22 22 C 1.47206 * 109.47036 * 190.00135 * 21 20 19 23 23 N 9.60070 * 144.65526 * 242.62728 * 4 1 2 24 24 C 1.46844 * 111.19834 * 298.26253 * 20 19 18 25 25 C 1.53036 * 109.52671 * 61.74021 * 24 20 19 26 26 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 27 27 C 1.38235 * 120.00123 * 359.97128 * 26 5 4 28 28 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 29 29 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 30 30 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 31 31 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 33 33 H 0.97000 * 120.00394 * 359.97438 * 14 12 6 34 34 H 1.08995 * 109.46976 * 299.99967 * 15 14 12 35 35 H 1.09003 * 109.47264 * 59.99968 * 15 14 12 36 36 H 1.09005 * 109.50058 * 182.19014 * 18 16 15 37 37 H 1.08998 * 109.50530 * 302.27009 * 18 16 15 38 38 H 1.09002 * 109.46538 * 179.19230 * 19 18 16 39 39 H 1.08995 * 109.46237 * 299.16398 * 19 18 16 40 40 H 1.09000 * 109.47014 * 309.99952 * 21 20 19 41 41 H 1.08999 * 109.47260 * 70.00574 * 21 20 19 42 42 H 1.09006 * 109.46074 * 181.75727 * 24 20 19 43 43 H 1.09000 * 109.46103 * 301.72846 * 24 20 19 44 44 H 1.09004 * 109.50340 * 180.88544 * 25 24 20 45 45 H 1.08996 * 109.50329 * 60.76463 * 25 24 20 46 46 H 1.08005 * 120.00087 * 180.02562 * 26 5 4 47 47 H 1.07999 * 120.00181 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 8 6.2544 -1.1672 -0.6753 8 14 6.3990 1.5206 -0.8810 9 1 5.9046 2.7333 -0.1811 10 1 7.8841 1.5208 -0.8816 11 1 5.9030 1.5200 -2.2806 12 6 6.2820 0.0003 1.4188 13 8 7.0524 -0.8599 1.7895 14 7 5.8762 0.9568 2.2772 15 6 6.3659 0.9576 3.6579 16 6 5.7569 2.1398 4.4144 17 1 4.6704 2.1008 4.3373 18 6 6.1681 2.0712 5.8877 19 6 7.6905 2.1861 5.9932 20 7 8.1289 3.4572 5.4028 21 6 9.5683 3.6651 5.6096 22 6 9.9257 5.0402 5.2243 23 7 10.1979 6.1041 4.9294 24 6 7.7867 3.5261 3.9764 25 6 6.2672 3.4513 3.8107 26 6 3.5804 -1.1973 -0.0006 27 6 2.1981 -1.1973 -0.0001 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1323 -0.0053 33 1 5.2603 1.6451 1.9807 34 1 6.0783 0.0265 4.1460 35 1 7.4522 1.0474 3.6581 36 1 5.7025 2.8915 6.4341 37 1 5.8441 1.1210 6.3121 38 1 7.9856 2.1520 7.0420 39 1 8.1552 1.3579 5.4582 40 1 9.8108 3.5076 6.6605 41 1 10.1290 2.9589 4.9974 42 1 8.1516 4.4653 3.5604 43 1 8.2508 2.6916 3.4509 44 1 6.0145 3.4866 2.7510 45 1 5.8032 4.2932 4.3244 46 1 4.1204 -2.1326 -0.0002 47 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:26:54 Heat of formation + Delta-G solvation = -44.413351 kcal Electronic energy + Delta-G solvation = -28785.015034 eV Core-core repulsion = 24932.517355 eV Total energy + Delta-G solvation = -3852.497679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95148 -38.84567 -37.81663 -36.70818 -34.84665 -33.24563 -32.40214 -30.98303 -30.30170 -29.98241 -28.37602 -26.67020 -25.66914 -23.42272 -23.20444 -22.50026 -21.83546 -20.32355 -19.04839 -18.45674 -17.84856 -16.57546 -16.03079 -15.57919 -15.39058 -15.13604 -14.91383 -14.77026 -14.36090 -14.21011 -13.82109 -13.53351 -13.41653 -13.32591 -13.32270 -13.03621 -12.72792 -12.63287 -12.53860 -12.33585 -12.22654 -12.03607 -11.92225 -11.77962 -11.46071 -11.26988 -11.19673 -10.69268 -10.46837 -10.45592 -10.41961 -10.35652 -10.28407 -9.83500 -9.51255 -8.77908 -8.67083 -8.13472 -8.09056 -7.55592 -5.98323 -5.45880 2.13139 2.23342 2.40358 2.59274 3.18634 3.32196 3.39870 3.61288 3.89543 3.91859 4.16765 4.53159 4.61981 4.67329 4.76790 4.80611 4.97361 5.00399 5.13134 5.30525 5.32184 5.39868 5.42667 5.44262 5.45632 5.68153 5.71033 5.72174 5.80098 5.82737 5.87953 5.91230 6.06083 6.10131 6.12428 6.17731 6.24234 6.34033 6.39298 6.54391 6.64527 6.73513 6.81011 6.88933 6.94030 7.25589 7.36552 7.38502 7.41029 7.72371 7.92042 8.54516 9.45301 9.98627 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.003556 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.645821 B = 7871.566233 C = 8379.136567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.156 4.156 5 C -0.059 4.059 6 C 0.025 3.975 7 O -0.811 6.811 8 Si 0.928 3.072 9 H -0.295 1.295 10 H -0.280 1.280 11 H -0.271 1.271 12 C 0.492 3.508 13 O -0.537 6.537 14 N -0.748 5.748 15 C 0.119 3.881 16 C -0.104 4.104 17 H 0.081 0.919 18 C -0.105 4.105 19 C 0.052 3.948 20 N -0.534 5.534 21 C 0.145 3.855 22 C 0.216 3.784 23 N -0.431 5.431 24 C 0.045 3.955 25 C -0.111 4.111 26 C -0.079 4.079 27 C -0.129 4.129 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.391 0.609 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 7.667 13.000 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.141 4.141 4 C -0.174 4.174 5 C -0.060 4.060 6 C -0.078 4.078 7 O -0.755 6.755 8 Si 0.757 3.243 9 H -0.225 1.225 10 H -0.206 1.206 11 H -0.195 1.195 12 C 0.281 3.719 13 O -0.412 6.412 14 N -0.407 5.407 15 C -0.005 4.005 16 C -0.123 4.123 17 H 0.099 0.901 18 C -0.143 4.143 19 C -0.075 4.075 20 N -0.260 5.260 21 C 0.014 3.986 22 C -0.103 4.103 23 N -0.109 5.109 24 C -0.082 4.082 25 C -0.149 4.149 26 C -0.097 4.097 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.225 0.775 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.447 9.391 12.460 15.979 hybrid contribution -0.079 -0.790 -0.333 0.861 sum -3.525 8.602 12.127 15.280 Atomic orbital electron populations 1.20661 0.92299 1.01710 1.01363 1.19677 0.95072 0.93536 1.03725 1.20760 0.93998 0.96664 1.02689 1.21218 0.94234 0.98109 1.03792 1.21452 0.99352 0.92063 0.93144 1.22543 0.88622 1.07018 0.89652 1.95077 1.81261 1.30452 1.68712 0.86635 0.80107 0.75131 0.82440 1.22519 1.20569 1.19537 1.23719 0.80040 0.79060 0.89057 1.90441 1.35394 1.37198 1.78203 1.46648 1.50812 1.32634 1.10569 1.21327 0.98436 0.97023 0.83752 1.21458 1.01010 0.94770 0.95023 0.90053 1.21536 0.94495 1.02538 0.95766 1.22192 0.96677 0.88946 0.99664 1.61930 1.12190 1.35457 1.16394 1.19548 0.90322 0.85185 1.03497 1.29033 0.93258 0.94864 0.93136 1.81262 1.08492 1.12076 1.09045 1.22278 0.97442 1.01572 0.86940 1.21595 0.94280 0.97539 1.01460 1.21100 0.92407 0.99595 0.96629 1.21022 0.94562 0.96684 1.02395 0.92139 0.92329 0.92366 0.87252 0.86623 0.77486 0.92410 0.92464 0.90671 0.90773 0.90111 0.93329 0.86230 0.89926 0.90999 0.93068 0.90854 0.90872 0.85416 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.12 -2.05 5.88 -104.62 -0.62 -2.67 16 3 C -0.12 -2.14 9.70 -39.59 -0.38 -2.52 16 4 C -0.16 -3.12 7.65 -39.58 -0.30 -3.42 16 5 C -0.06 -1.42 4.39 -104.62 -0.46 -1.88 16 6 C 0.03 0.71 0.70 -29.03 -0.02 0.69 16 7 O -0.81 -28.31 16.19 -55.09 -0.89 -29.20 16 8 Si 0.93 22.83 24.29 -169.99 -4.13 18.70 16 9 H -0.30 -5.95 6.38 56.52 0.36 -5.59 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.49 12.81 5.95 -10.99 -0.07 12.74 16 13 O -0.54 -16.08 16.51 -14.30 -0.24 -16.31 16 14 N -0.75 -14.71 4.80 -60.29 -0.29 -15.00 16 15 C 0.12 1.87 4.47 -4.04 -0.02 1.85 16 16 C -0.10 -1.18 2.72 -90.50 -0.25 -1.43 16 17 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -0.93 5.60 -26.65 -0.15 -1.08 16 19 C 0.05 0.43 5.21 -3.83 -0.02 0.41 16 20 N -0.53 -4.89 4.63 -238.18 -1.10 -5.99 16 21 C 0.14 1.06 5.46 -6.61 -0.04 1.03 16 22 C 0.22 2.28 14.43 -20.72 -0.30 1.98 16 23 N -0.43 -5.86 18.55 42.20 0.78 -5.07 16 24 C 0.05 0.51 5.05 -3.84 -0.02 0.49 16 25 C -0.11 -1.26 5.50 -26.65 -0.15 -1.41 16 26 C -0.08 -1.87 9.35 -39.58 -0.37 -2.24 16 27 C -0.13 -2.46 9.70 -39.58 -0.38 -2.85 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.12 2.14 5.26 -52.49 -0.28 1.86 16 33 H 0.39 6.94 5.93 -40.82 -0.24 6.70 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.92 4.94 -51.93 -0.26 0.67 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.49 8.02 -51.93 -0.42 0.07 16 39 H 0.05 0.45 6.63 -51.93 -0.34 0.11 16 40 H 0.12 0.52 7.99 -51.93 -0.41 0.11 16 41 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.07 0.85 7.11 -51.93 -0.37 0.48 16 43 H 0.05 0.66 6.40 -51.93 -0.33 0.33 16 44 H 0.07 0.91 7.16 -51.93 -0.37 0.54 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.13 3.33 7.48 -52.48 -0.39 2.94 16 47 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -38.06 373.50 -10.31 -48.37 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.90 Total: 0.14 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.17 Total: -1.27 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: -0.61 Total: -26.06 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.13 Total: -45.51 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.06 -10.31 -48.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.958 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds