corina     4.2.0 0026  27.09.2018  xiaobo    24. 03. 2020 09:29  n-1-17.cluster.ucsf.bkslab.org

Input file type  SMILES
Output file type SYBYL MOL2

INFORMATION corina(): Annual license expires on August 9, 2022

Options:
   Writing added hydrogen atoms
   Generating multiple ring conformations
      Generating a maximum of 1 ring conformations
      Inverting flippy ring nitrogen atoms
      Applying an energy window of 6.0 kJ/mol
      Setting RMS for similar conformations set to 0.30 A
   Canonicalizing molecules before 3D generation
   Max. atoms per fragment: 999

Standard values, version 3.4 January, 2006 
Ring templates, version 3.0 March, 2001 
Torsion angle library version December, 1999 (1088 patterns), all rights CCDC, Cambridge, UK
International Chemical Identifier (InChI) Software version 1.05 (January 2017), copyright (C) IUPAC and InChI Trust Limited

*** RECORD no.:  1 read ***********************
   Name ZINC001181382323
   28 atoms

ERROR allcis(): No suited stereo descriptors for bridge 4- -30 (half-defined)
                4-29-30
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (2).

ERROR allcis(): No suited stereo descriptors for bridge 42- -8 (half-defined)
                42-24-8
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (3).
INFORMATION gen3d(): 0 flexible ring system(s)
INFORMATION gen3d(): 1 possible conformation(s)
INFORMATION gen3d(): 1 conformation(s) cached
ERROR quality(): Violated stereo atom 4
ERROR gen3d(): 3D structure didn't pass the quality check
WARNING gen3d(): Re-ordering CT to build 3D structure (4).
ERROR getconf(): Can't build ring fragment
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (5).

ERROR allcis(): No suited stereo descriptors for bridge 31- -15 (half-defined)
                31-24-15
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (6).
INFORMATION gen3d(): 0 flexible ring system(s)
INFORMATION gen3d(): 1 possible conformation(s)
INFORMATION gen3d(): 1 conformation(s) cached
ERROR quality(): Violated stereo atom 4
ERROR gen3d(): 3D structure didn't pass the quality check
WARNING gen3d(): Re-ordering CT to build 3D structure (7).
ERROR getconf(): Can't build ring fragment
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (8).

ERROR allcis(): No suited stereo descriptors for bridge 16- -40 (half-defined)
                16-35-40
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (9).

ERROR allcis(): No suited stereo descriptors for bridge 17- -32 (half-defined)
                17-27-32
ERROR gen3d(): Unable to build a 3D structure.
WARNING gen3d(): Re-ordering CT to build 3D structure (10).
INFORMATION gen3d(): 0 flexible ring system(s)
INFORMATION gen3d(): 1 possible conformation(s)
INFORMATION gen3d(): 1 conformation(s) cached

WARNING rrefine(): 21 pair(s) of crowded atoms
ERROR quality(): Bad contacts detected
ERROR gen3d(): 3D structure didn't pass the quality check
   Elapsed time: 50 ms

1 record(s) read, 0 converted
   1 corina error(s)
   Totally elapsed time: 0 s
INFORMATION corina: Statistics over multiple ring conformer generation