Wall clock time and date at job start Tue Mar 24 2020 10:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38246 * 119.99989 * 2 1 4 4 C 1.38234 * 120.00042 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99889 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47079 * 30.00455 * 6 5 4 8 8 Si 1.86301 * 109.47149 * 149.99950 * 6 5 4 9 9 H 1.48506 * 109.47302 * 59.99966 * 8 6 5 10 10 H 1.48503 * 109.47334 * 300.00099 * 8 6 5 11 11 H 1.48500 * 109.47376 * 180.02562 * 8 6 5 12 12 C 1.50699 * 109.47269 * 270.00086 * 6 5 4 13 13 O 1.21280 * 120.00220 * 124.99954 * 12 6 5 14 14 N 1.34779 * 119.99746 * 304.99897 * 12 6 5 15 15 C 1.46500 * 119.99877 * 180.02562 * 14 12 6 16 16 C 1.50696 * 109.47373 * 179.97438 * 15 14 12 17 17 C 1.38382 * 119.92906 * 269.72905 * 16 15 14 18 18 C 1.38340 * 120.30686 * 179.76629 * 17 16 15 19 19 C 1.37969 * 120.15133 * 0.50228 * 18 17 16 20 20 C 1.39617 * 119.84708 * 359.75431 * 19 18 17 21 21 C 1.43192 * 120.15091 * 179.97438 * 20 19 18 22 22 N 7.54122 * 92.11537 * 248.38711 * 2 1 3 23 23 C 1.37925 * 119.92081 * 89.99660 * 16 15 14 24 24 C 1.38240 * 120.00274 * 0.27277 * 5 4 3 25 25 C 1.38234 * 119.99763 * 359.51829 * 24 5 4 26 26 H 1.08997 * 109.47124 * 90.00077 * 1 2 3 27 27 H 1.08996 * 109.46647 * 209.99910 * 1 2 3 28 28 H 1.08997 * 109.47097 * 329.99576 * 1 2 3 29 29 H 1.07992 * 119.99815 * 359.97438 * 3 2 1 30 30 H 1.07993 * 119.99940 * 180.02562 * 4 3 2 31 31 H 0.96997 * 120.00113 * 359.97438 * 14 12 6 32 32 H 1.08994 * 109.47134 * 300.00146 * 15 14 12 33 33 H 1.09009 * 109.47131 * 60.00123 * 15 14 12 34 34 H 1.08000 * 119.84563 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.92409 * 180.25862 * 18 17 16 36 36 H 1.07994 * 120.08046 * 179.72627 * 19 18 17 37 37 H 1.08000 * 120.07915 * 359.96311 * 23 16 15 38 38 H 1.08006 * 120.00140 * 179.72750 * 24 5 4 39 39 H 1.08000 * 119.99996 * 180.27014 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5806 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 8 6.2545 1.1671 0.6763 8 14 6.3991 -1.5206 0.8822 9 1 5.9046 -2.7335 0.1823 10 1 5.9030 -1.5200 2.2819 11 1 7.8841 -1.5203 0.8839 12 6 6.2822 -0.0005 -1.4176 13 8 7.0526 0.8597 -1.7883 14 7 5.8763 -0.9570 -2.2760 15 6 6.3662 -0.9580 -3.6567 16 6 5.7663 -2.1224 -4.4018 17 6 6.4203 -3.3419 -4.4188 18 6 5.8743 -4.4174 -5.0963 19 6 4.6777 -4.2777 -5.7688 20 6 4.0152 -3.0488 -5.7603 21 6 2.7732 -2.8964 -6.4565 22 7 1.7854 -2.7758 -7.0063 23 6 4.5695 -1.9688 -5.0698 24 6 3.5806 -1.1971 -0.0036 25 6 2.1982 -1.1971 0.0003 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.2605 -1.6452 -1.9794 32 1 6.0786 -0.0268 -4.1448 33 1 7.4525 -1.0478 -3.6567 34 1 7.3596 -3.4554 -3.8980 35 1 6.3879 -5.3674 -5.1021 36 1 4.2548 -5.1169 -6.3010 37 1 4.0620 -1.0155 -5.0589 38 1 4.1206 -2.1324 -0.0072 39 1 1.6583 -2.1324 0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045406441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:27:09 Heat of formation + Delta-G solvation = -20.098696 kcal Electronic energy + Delta-G solvation = -24394.043050 eV Core-core repulsion = 20845.497699 eV Total energy + Delta-G solvation = -3548.545351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85816 -38.88495 -37.85311 -36.59205 -34.23570 -33.23015 -31.51496 -31.19182 -30.30344 -29.94711 -26.83733 -25.88605 -24.06989 -23.13558 -21.83440 -21.76783 -20.31614 -19.07452 -18.33747 -16.51281 -16.15133 -15.84023 -15.25343 -15.06705 -14.78633 -14.41475 -14.23986 -14.12194 -13.72524 -13.45900 -13.29759 -13.27374 -13.02857 -12.89194 -12.62788 -12.57860 -12.31188 -12.14335 -11.91417 -11.69439 -11.47682 -11.22502 -11.17031 -10.49411 -10.36695 -10.30411 -9.84646 -9.53766 -9.25018 -9.15152 -8.72774 -8.21720 -8.12105 -7.55782 -5.99739 -5.47401 0.57405 1.05561 2.13437 2.23853 2.49144 2.74977 3.18869 3.31927 3.40039 3.62050 3.69046 3.89265 4.28350 4.51995 4.56761 4.64856 4.75097 4.85181 5.05154 5.18797 5.41019 5.41435 5.45434 5.63969 5.72084 5.80192 5.82061 5.88813 5.98295 6.03840 6.08684 6.11573 6.18326 6.37739 6.41263 6.54638 6.58335 6.76901 6.88530 6.94351 7.26016 7.29583 7.30864 7.39290 7.72207 7.92140 8.48427 9.40380 9.95809 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005533 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.262158 B = 5059.392966 C = 6596.356706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.079 4.079 5 C -0.060 4.060 6 C 0.025 3.975 7 O -0.810 6.810 8 Si 0.931 3.069 9 H -0.295 1.295 10 H -0.270 1.270 11 H -0.279 1.279 12 C 0.492 3.508 13 O -0.534 6.534 14 N -0.746 5.746 15 C 0.154 3.846 16 C -0.095 4.095 17 C -0.072 4.072 18 C -0.122 4.122 19 C -0.070 4.070 20 C -0.034 4.034 21 C 0.258 3.742 22 N -0.422 5.422 23 C -0.052 4.052 24 C -0.155 4.155 25 C -0.123 4.123 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.394 0.606 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 -11.912 -9.169 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.147 4.147 4 C -0.097 4.097 5 C -0.061 4.061 6 C -0.079 4.079 7 O -0.753 6.753 8 Si 0.760 3.240 9 H -0.224 1.224 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.282 3.718 13 O -0.408 6.408 14 N -0.406 5.406 15 C 0.030 3.970 16 C -0.095 4.095 17 C -0.092 4.092 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.037 4.037 21 C -0.057 4.057 22 N -0.097 5.097 23 C -0.073 4.073 24 C -0.173 4.173 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.228 0.772 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.413 -11.474 -9.679 15.957 hybrid contribution -0.074 -0.302 0.150 0.346 sum -5.487 -11.777 -9.528 16.112 Atomic orbital electron populations 1.20664 0.92329 1.01775 1.01314 1.19682 0.95063 0.93548 1.03629 1.21024 0.94585 0.96677 1.02392 1.21094 0.92386 0.99593 0.96618 1.21431 0.99292 0.92059 0.93313 1.22584 0.88680 1.07225 0.89416 1.95083 1.81258 1.30501 1.68483 0.86579 0.80098 0.74985 0.82365 1.22438 1.19522 1.20421 1.23875 0.80017 0.78938 0.88969 1.90456 1.35284 1.37079 1.78023 1.46767 1.51067 1.32997 1.09725 1.20117 0.98575 0.94663 0.83640 1.20026 0.95000 0.95996 0.98497 1.21446 0.99713 0.91828 0.96172 1.21086 0.95634 0.99321 0.97947 1.21165 0.94707 0.95468 0.97777 1.15966 0.90223 0.95880 1.01673 1.25757 0.92902 0.93695 0.93361 1.81287 1.11113 1.07465 1.09852 1.21185 0.94369 0.97995 0.93715 1.21221 0.94220 0.98123 1.03735 1.20762 0.94023 0.96658 1.02646 0.92176 0.92358 0.92298 0.87279 0.85394 0.77231 0.91114 0.90980 0.84819 0.84804 0.85118 0.84672 0.86568 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.01 36.01 0.36 -1.02 16 2 C -0.12 -2.07 5.88 -104.62 -0.62 -2.68 16 3 C -0.13 -2.48 9.70 -39.58 -0.38 -2.87 16 4 C -0.08 -1.86 9.35 -39.58 -0.37 -2.23 16 5 C -0.06 -1.43 4.39 -104.62 -0.46 -1.89 16 6 C 0.02 0.68 0.70 -29.03 -0.02 0.66 16 7 O -0.81 -27.94 16.19 -55.09 -0.89 -28.83 16 8 Si 0.93 22.38 24.30 -169.99 -4.13 18.25 16 9 H -0.29 -5.78 6.38 56.52 0.36 -5.42 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.49 12.61 5.95 -10.98 -0.07 12.55 16 13 O -0.53 -15.73 16.51 -14.30 -0.24 -15.97 16 14 N -0.75 -14.41 5.09 -61.47 -0.31 -14.73 16 15 C 0.15 2.36 5.79 -5.20 -0.03 2.33 16 16 C -0.09 -1.10 5.24 -104.69 -0.55 -1.65 16 17 C -0.07 -0.69 9.69 -39.49 -0.38 -1.08 16 18 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 19 C -0.07 -0.57 9.76 -39.17 -0.38 -0.95 16 20 C -0.03 -0.35 5.73 -106.93 -0.61 -0.96 16 21 C 0.26 3.06 15.33 -22.45 -0.34 2.71 16 22 N -0.42 -5.92 18.54 41.87 0.78 -5.14 16 23 C -0.05 -0.57 9.41 -39.17 -0.37 -0.94 16 24 C -0.16 -3.10 7.64 -39.58 -0.30 -3.41 16 25 C -0.12 -2.15 9.70 -39.58 -0.38 -2.54 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.13 3.32 7.48 -52.49 -0.39 2.93 16 31 H 0.39 6.90 6.69 -40.82 -0.27 6.63 16 32 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.07 1.09 8.08 -51.92 -0.42 0.67 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 2.13 5.26 -52.48 -0.28 1.86 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -36.80 343.77 -9.34 -46.13 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.42 Total: 0.40 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -5.31 Total: -5.29 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.46 Total: -19.87 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.13 Total: -44.80 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.13 Total: 18.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.80 -9.34 -46.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045406441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.035 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds