Wall clock time and date at job start Tue Mar 24 2020 10:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38246 * 119.99989 * 2 1 4 4 C 1.38234 * 120.00042 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99889 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47079 * 30.00455 * 6 5 4 8 8 Si 1.86301 * 109.47149 * 149.99950 * 6 5 4 9 9 H 1.48506 * 109.47302 * 59.99966 * 8 6 5 10 10 H 1.48503 * 109.47334 * 300.00099 * 8 6 5 11 11 H 1.48500 * 109.47376 * 180.02562 * 8 6 5 12 12 C 1.50699 * 109.47269 * 270.00086 * 6 5 4 13 13 O 1.21280 * 120.00220 * 124.99954 * 12 6 5 14 14 N 1.34779 * 119.99746 * 304.99897 * 12 6 5 15 15 C 1.46500 * 119.99877 * 180.02562 * 14 12 6 16 16 C 1.50696 * 109.47373 * 179.97438 * 15 14 12 17 17 C 1.38382 * 119.92906 * 269.72905 * 16 15 14 18 18 C 1.38340 * 120.30686 * 179.76629 * 17 16 15 19 19 C 1.37969 * 120.15133 * 0.50228 * 18 17 16 20 20 C 1.39617 * 119.84708 * 359.75431 * 19 18 17 21 21 C 1.43192 * 120.15091 * 179.97438 * 20 19 18 22 22 N 7.54122 * 92.11537 * 248.38711 * 2 1 3 23 23 C 1.37925 * 119.92081 * 89.99660 * 16 15 14 24 24 C 1.38240 * 120.00274 * 0.27277 * 5 4 3 25 25 C 1.38234 * 119.99763 * 359.51829 * 24 5 4 26 26 H 1.08997 * 109.47124 * 90.00077 * 1 2 3 27 27 H 1.08996 * 109.46647 * 209.99910 * 1 2 3 28 28 H 1.08997 * 109.47097 * 329.99576 * 1 2 3 29 29 H 1.07992 * 119.99815 * 359.97438 * 3 2 1 30 30 H 1.07993 * 119.99940 * 180.02562 * 4 3 2 31 31 H 0.96997 * 120.00113 * 359.97438 * 14 12 6 32 32 H 1.08994 * 109.47134 * 300.00146 * 15 14 12 33 33 H 1.09009 * 109.47131 * 60.00123 * 15 14 12 34 34 H 1.08000 * 119.84563 * 359.97438 * 17 16 15 35 35 H 1.07999 * 119.92409 * 180.25862 * 18 17 16 36 36 H 1.07994 * 120.08046 * 179.72627 * 19 18 17 37 37 H 1.08000 * 120.07915 * 359.96311 * 23 16 15 38 38 H 1.08006 * 120.00140 * 179.72750 * 24 5 4 39 39 H 1.08000 * 119.99996 * 180.27014 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5806 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 8 6.2545 1.1671 0.6763 8 14 6.3991 -1.5206 0.8822 9 1 5.9046 -2.7335 0.1823 10 1 5.9030 -1.5200 2.2819 11 1 7.8841 -1.5203 0.8839 12 6 6.2822 -0.0005 -1.4176 13 8 7.0526 0.8597 -1.7883 14 7 5.8763 -0.9570 -2.2760 15 6 6.3662 -0.9580 -3.6567 16 6 5.7663 -2.1224 -4.4018 17 6 6.4203 -3.3419 -4.4188 18 6 5.8743 -4.4174 -5.0963 19 6 4.6777 -4.2777 -5.7688 20 6 4.0152 -3.0488 -5.7603 21 6 2.7732 -2.8964 -6.4565 22 7 1.7854 -2.7758 -7.0063 23 6 4.5695 -1.9688 -5.0698 24 6 3.5806 -1.1971 -0.0036 25 6 2.1982 -1.1971 0.0003 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.2605 -1.6452 -1.9794 32 1 6.0786 -0.0268 -4.1448 33 1 7.4525 -1.0478 -3.6567 34 1 7.3596 -3.4554 -3.8980 35 1 6.3879 -5.3674 -5.1021 36 1 4.2548 -5.1169 -6.3010 37 1 4.0620 -1.0155 -5.0589 38 1 4.1206 -2.1324 -0.0072 39 1 1.6583 -2.1324 0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045406441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:27:08 Heat of formation + Delta-G solvation = -45.859592 kcal Electronic energy + Delta-G solvation = -24395.160126 eV Core-core repulsion = 20845.497699 eV Total energy + Delta-G solvation = -3549.662427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96570 -40.34780 -39.53732 -37.58963 -35.73259 -34.89873 -32.45421 -32.20506 -32.05782 -31.58554 -28.44543 -27.15440 -24.91249 -24.69079 -23.41068 -22.69266 -21.92695 -20.75779 -19.38740 -17.83180 -17.24656 -16.97193 -16.77151 -16.60940 -16.38010 -15.78794 -15.39750 -15.22026 -15.08898 -14.96315 -14.55226 -14.27473 -14.22139 -14.15879 -14.04467 -13.88312 -13.62846 -13.29569 -13.16948 -13.00712 -12.71269 -12.38970 -12.29997 -12.20615 -12.03374 -11.96545 -11.70870 -11.32801 -10.89779 -9.95399 -9.90840 -9.87785 -9.69499 -9.19987 -8.32206 -7.73775 -0.20017 0.28462 0.56369 0.65598 1.23031 1.36522 1.48303 1.58267 1.89170 1.99248 2.47574 2.69062 2.83850 2.97580 3.14496 3.63193 3.92221 4.08777 4.11976 4.14464 4.28451 4.29445 4.34221 4.48543 4.57003 4.62260 4.65607 4.79912 4.85156 4.93202 4.96862 4.99781 5.02048 5.09471 5.31148 5.32501 5.39348 5.42832 5.56254 5.66438 5.69034 5.80767 5.86822 6.07459 6.32366 6.42041 6.74319 7.48868 7.93937 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.005533 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.262158 B = 5059.392966 C = 6596.356706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.110 4.110 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.088 4.088 6 C -0.034 4.034 7 O -0.903 6.903 8 Si 0.965 3.035 9 H -0.205 1.205 10 H -0.280 1.280 11 H -0.304 1.304 12 C 0.490 3.510 13 O -0.594 6.594 14 N -0.724 5.724 15 C 0.154 3.846 16 C -0.108 4.108 17 C -0.067 4.067 18 C -0.108 4.108 19 C -0.051 4.051 20 C -0.042 4.042 21 C 0.279 3.721 22 N -0.466 5.466 23 C -0.056 4.056 24 C -0.154 4.154 25 C -0.110 4.110 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.406 0.594 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -17.569 -10.346 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.090 4.090 6 C -0.133 4.133 7 O -0.850 6.850 8 Si 0.789 3.211 9 H -0.129 1.129 10 H -0.206 1.206 11 H -0.232 1.232 12 C 0.280 3.720 13 O -0.473 6.473 14 N -0.381 5.381 15 C 0.031 3.969 16 C -0.109 4.109 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.071 4.071 20 C -0.045 4.045 21 C -0.035 4.035 22 N -0.142 5.142 23 C -0.077 4.077 24 C -0.172 4.172 25 C -0.127 4.127 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.242 0.758 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.189 0.811 36 H 0.178 0.822 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.113 -17.215 -10.914 21.938 hybrid contribution 0.675 1.454 0.430 1.659 sum -7.438 -15.761 -10.484 20.338 Atomic orbital electron populations 1.20743 0.88522 1.03604 1.02897 1.20228 0.97676 0.92409 1.00690 1.21203 0.92639 0.99080 1.01688 1.20904 0.94483 0.97936 1.00513 1.21098 0.97407 0.93924 0.96533 1.23551 0.91331 1.07914 0.90527 1.94976 1.83467 1.35282 1.71292 0.86041 0.77958 0.75809 0.81269 1.12919 1.20590 1.23209 1.23531 0.79467 0.79394 0.89602 1.90402 1.38153 1.39663 1.79128 1.46343 1.49870 1.31229 1.10683 1.20199 0.98901 0.96328 0.81499 1.19592 0.95847 0.95510 0.99921 1.21654 0.99860 0.91205 0.95906 1.21444 0.95050 0.99958 0.96087 1.21547 0.94171 0.95062 0.96367 1.15960 0.89872 0.96587 1.02095 1.25967 0.92700 0.92437 0.92405 1.81311 1.12544 1.08825 1.11487 1.21071 0.94316 0.98141 0.94188 1.21360 0.95606 0.96909 1.03297 1.21291 0.92972 0.98675 0.99785 0.90512 0.89811 0.91355 0.85401 0.90669 0.75784 0.92591 0.90870 0.83631 0.81081 0.82225 0.85803 0.84222 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.11 -3.44 5.88 -19.86 -0.12 -3.56 16 3 C -0.13 -4.97 9.70 22.27 0.22 -4.75 16 4 C -0.12 -6.07 9.35 22.27 0.21 -5.86 16 5 C -0.09 -4.38 4.39 -19.86 -0.09 -4.47 16 6 C -0.03 -1.95 0.70 29.10 0.02 -1.93 16 7 O -0.90 -68.34 16.19 -129.99 -2.10 -70.44 16 8 Si 0.97 45.57 24.30 68.60 1.67 47.24 16 9 H -0.20 -6.70 6.38 99.48 0.63 -6.06 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 12 C 0.49 26.55 5.95 87.66 0.52 27.07 16 13 O -0.59 -37.99 16.51 15.96 0.26 -37.72 16 14 N -0.72 -28.08 5.09 -466.79 -2.37 -30.46 16 15 C 0.15 4.77 5.79 85.63 0.50 5.26 16 16 C -0.11 -2.30 5.24 -19.91 -0.10 -2.40 16 17 C -0.07 -1.00 9.69 22.33 0.22 -0.79 16 18 C -0.11 -1.02 10.03 22.23 0.22 -0.80 16 19 C -0.05 -0.55 9.76 22.54 0.22 -0.33 16 20 C -0.04 -0.71 5.73 -21.36 -0.12 -0.83 16 21 C 0.28 5.97 15.33 88.32 1.35 7.33 16 22 N -0.47 -12.35 18.54 19.01 0.35 -11.99 16 23 C -0.06 -1.14 9.41 22.54 0.21 -0.93 16 24 C -0.15 -5.75 7.64 22.27 0.17 -5.58 16 25 C -0.11 -3.33 9.70 22.27 0.22 -3.11 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 28 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 29 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.07 4.47 7.48 -2.91 -0.02 4.45 16 31 H 0.41 13.42 6.69 -92.71 -0.62 12.80 16 32 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 33 H 0.07 2.26 8.08 -2.38 -0.02 2.24 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.14 4.41 5.26 -2.91 -0.02 4.39 16 39 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -94.24 343.77 3.31 -90.93 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.15 Total: 9.59 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.36 Total: 2.87 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -2.02 Total: -42.45 kcal Atomic # 8 Polarization: -106.33 SS G_CDS: -1.84 Total: -108.17 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Total: -94.24 3.31 -90.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045406441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.070 kcal (2) G-P(sol) polarization free energy of solvation -94.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds