Wall clock time and date at job start Tue Mar 24 2020 10:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38233 * 119.99999 * 2 1 4 4 C 1.38234 * 120.00023 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00321 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.47509 * 213.16440 * 6 5 4 8 8 Si 1.86302 * 109.46915 * 333.16385 * 6 5 4 9 9 H 1.48504 * 109.47185 * 175.53956 * 8 6 5 10 10 H 1.48498 * 109.47180 * 295.53847 * 8 6 5 11 11 H 1.48494 * 109.47486 * 55.54017 * 8 6 5 12 12 C 1.50697 * 109.47243 * 93.16080 * 6 5 4 13 13 O 1.21281 * 119.99871 * 336.37551 * 12 6 5 14 14 N 1.34776 * 120.00211 * 156.37265 * 12 6 5 15 15 C 1.46498 * 120.00273 * 5.14971 * 14 12 6 16 16 C 1.46502 * 120.00057 * 185.14726 * 14 12 6 17 17 C 1.50702 * 109.47107 * 270.00020 * 16 14 12 18 18 C 1.38384 * 119.92517 * 270.02366 * 17 16 14 19 19 C 1.38344 * 120.30553 * 179.97438 * 18 17 16 20 20 C 1.37967 * 120.15050 * 359.76353 * 19 18 17 21 21 C 1.39612 * 119.84546 * 0.51199 * 20 19 18 22 22 C 1.43206 * 120.15286 * 179.74473 * 21 20 19 23 23 N 9.21126 * 127.55454 * 51.80405 * 2 1 3 24 24 C 1.37931 * 119.92279 * 90.00319 * 17 16 14 25 25 C 1.38233 * 119.99955 * 0.27973 * 5 4 3 26 26 C 1.38232 * 119.99964 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47237 * 89.99760 * 1 2 3 28 28 H 1.08999 * 109.47037 * 209.99732 * 1 2 3 29 29 H 1.08999 * 109.47092 * 330.00035 * 1 2 3 30 30 H 1.08001 * 119.99912 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00379 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46776 * 265.73829 * 15 14 12 33 33 H 1.09005 * 109.46510 * 25.73251 * 15 14 12 34 34 H 1.08991 * 109.47689 * 145.73244 * 15 14 12 35 35 H 1.09002 * 109.47419 * 150.00373 * 16 14 12 36 36 H 1.09001 * 109.47254 * 30.00254 * 16 14 12 37 37 H 1.07993 * 119.84705 * 359.97292 * 18 17 16 38 38 H 1.08002 * 119.92182 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.07983 * 180.25777 * 20 19 18 40 40 H 1.07999 * 120.07728 * 0.03680 * 24 17 16 41 41 H 1.07997 * 120.00223 * 179.72733 * 25 5 4 42 42 H 1.08006 * 120.00216 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 8 6.2556 -1.1282 -0.7334 8 14 6.4003 1.5669 -0.7904 9 1 7.8813 1.6174 -0.6928 10 1 5.9973 1.5919 -2.2194 11 1 5.8179 2.7404 -0.0913 12 6 6.2799 -0.0778 1.4218 13 8 5.5741 0.2937 2.3354 14 7 7.5125 -0.5601 1.6757 15 6 8.4075 -0.9032 0.5677 16 6 7.9575 -0.7414 3.0597 17 6 8.6266 0.5201 3.5415 18 6 9.9892 0.6881 3.3685 19 6 10.6114 1.8432 3.8073 20 6 9.8752 2.8383 4.4167 21 6 8.5010 2.6728 4.5997 22 6 7.7314 3.6991 5.2363 23 7 7.1214 4.5155 5.7390 24 6 7.8793 1.5046 4.1536 25 6 3.5806 -1.1971 -0.0037 26 6 2.1982 -1.1971 0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1324 0.0010 32 1 8.3105 -1.9643 0.3376 33 1 8.1404 -0.3151 -0.3104 34 1 9.4370 -0.6855 0.8514 35 1 8.6649 -1.5692 3.1085 36 1 7.0973 -0.9608 3.6921 37 1 10.5696 -0.0860 2.8887 38 1 11.6752 1.9681 3.6687 39 1 10.3614 3.7413 4.7551 40 1 6.8159 1.3721 4.2882 41 1 4.1205 -2.1324 -0.0073 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025104861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 10:48:52 Heat of formation + Delta-G solvation = -6.942808 kcal Electronic energy + Delta-G solvation = -26780.557412 eV Core-core repulsion = 23077.044924 eV Total energy + Delta-G solvation = -3703.512488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.72474 -38.80278 -37.90995 -36.37493 -34.65058 -33.13459 -31.76307 -31.23926 -30.19018 -29.86650 -26.77870 -26.42916 -25.25815 -23.79108 -23.02132 -21.75749 -21.54344 -20.05138 -18.52477 -17.70406 -16.27320 -15.81709 -15.60982 -15.19989 -15.12829 -14.63370 -14.49766 -14.15107 -13.90723 -13.82825 -13.30963 -13.22148 -13.07751 -12.80829 -12.72336 -12.59746 -12.49754 -12.07438 -11.99783 -11.88684 -11.71895 -11.60558 -11.48184 -11.14620 -11.00417 -10.94808 -10.44048 -10.23398 -10.02120 -9.77969 -9.40875 -9.06918 -8.90936 -8.69117 -7.94865 -7.72061 -7.47047 -5.98198 -5.56758 0.81653 1.33830 2.32786 2.39983 2.71770 2.97323 3.23154 3.33257 3.41066 3.75439 3.83182 3.94571 4.21026 4.53544 4.83042 4.85091 4.88980 5.11237 5.28804 5.36896 5.54086 5.56543 5.57939 5.80800 5.86030 5.95405 5.98220 6.00981 6.04372 6.06323 6.20138 6.29747 6.31348 6.32544 6.50411 6.57142 6.66813 6.68484 6.73319 6.86351 7.02133 7.03434 7.07319 7.41529 7.49048 7.53061 7.58176 7.84718 8.04604 8.47917 9.30388 9.81581 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.004414 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.477517 B = 6342.080267 C = 7298.635861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.120 4.120 3 C -0.126 4.126 4 C -0.140 4.140 5 C -0.039 4.039 6 C 0.021 3.979 7 O -0.825 6.825 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.294 1.294 12 C 0.505 3.495 13 O -0.574 6.574 14 N -0.605 5.605 15 C 0.112 3.888 16 C 0.149 3.851 17 C -0.096 4.096 18 C -0.078 4.078 19 C -0.127 4.127 20 C -0.076 4.076 21 C -0.039 4.039 22 C 0.261 3.739 23 N -0.427 5.427 24 C -0.045 4.045 25 C -0.078 4.078 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 0.703 4.896 7.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.144 4.144 4 C -0.158 4.158 5 C -0.040 4.040 6 C -0.081 4.081 7 O -0.771 6.771 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.193 1.193 11 H -0.223 1.223 12 C 0.298 3.702 13 O -0.454 6.454 14 N -0.338 5.338 15 C -0.031 4.031 16 C 0.026 3.974 17 C -0.098 4.098 18 C -0.097 4.097 19 C -0.145 4.145 20 C -0.096 4.096 21 C -0.043 4.043 22 C -0.054 4.054 23 N -0.102 5.102 24 C -0.066 4.066 25 C -0.096 4.096 26 C -0.151 4.151 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.953 2.642 5.582 7.917 hybrid contribution 0.196 -0.400 -0.080 0.453 sum 5.149 2.241 5.502 7.862 Atomic orbital electron populations 1.20651 0.92421 1.01654 1.01199 1.19634 0.94963 0.93549 1.03865 1.20741 0.94075 0.96609 1.02976 1.21230 0.94193 0.98372 1.01977 1.20923 0.98495 0.91944 0.92617 1.22479 0.89180 1.06713 0.89759 1.95041 1.80972 1.34145 1.66948 0.86653 0.79067 0.77302 0.81754 1.19970 1.19304 1.22339 1.23387 0.79302 0.73185 0.94371 1.90462 1.56755 1.49883 1.48302 1.47745 1.15808 1.65888 1.04354 1.21783 0.89135 1.02264 0.89903 1.20262 0.99080 0.92496 0.85566 1.20456 0.93715 0.97957 0.97650 1.21355 0.94166 0.97528 0.96684 1.21015 1.00096 0.93732 0.99657 1.21097 0.91701 0.99159 0.97683 1.16042 0.92348 0.92016 1.03857 1.25758 0.93289 0.93064 0.93250 1.81220 1.08460 1.10374 1.10145 1.21371 1.00931 0.90708 0.93552 1.20942 0.92414 0.99057 0.97230 1.20942 0.94596 0.96498 1.03091 0.92232 0.92390 0.92445 0.87488 0.86824 0.92680 0.89052 0.95559 0.90170 0.89525 0.85289 0.85133 0.85380 0.84043 0.85879 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.01 36.01 0.36 -1.14 16 2 C -0.12 -2.32 5.88 -104.63 -0.62 -2.94 16 3 C -0.13 -2.58 9.70 -39.58 -0.38 -2.96 16 4 C -0.14 -3.30 8.65 -39.58 -0.34 -3.64 16 5 C -0.04 -0.99 4.01 -104.63 -0.42 -1.41 16 6 C 0.02 0.55 0.56 -29.04 -0.02 0.53 16 7 O -0.82 -24.50 13.76 -35.23 -0.48 -24.98 16 8 Si 0.92 22.69 23.22 -169.99 -3.95 18.74 16 9 H -0.27 -6.34 6.52 56.52 0.37 -5.97 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 6.19 56.52 0.35 -6.60 16 12 C 0.51 12.63 5.81 -10.99 -0.06 12.57 16 13 O -0.57 -14.86 15.05 5.56 0.08 -14.77 16 14 N -0.60 -12.80 2.86 -182.95 -0.52 -13.33 16 15 C 0.11 2.25 8.93 59.85 0.53 2.78 16 16 C 0.15 2.46 5.51 -5.19 -0.03 2.43 16 17 C -0.10 -1.42 5.46 -104.68 -0.57 -1.99 16 18 C -0.08 -0.92 9.69 -39.49 -0.38 -1.31 16 19 C -0.13 -1.30 10.03 -39.64 -0.40 -1.70 16 20 C -0.08 -0.84 9.76 -39.17 -0.38 -1.22 16 21 C -0.04 -0.55 5.73 -106.93 -0.61 -1.16 16 22 C 0.26 4.02 15.33 -22.46 -0.34 3.68 16 23 N -0.43 -7.31 18.54 41.85 0.78 -6.53 16 24 C -0.04 -0.70 9.26 -39.17 -0.36 -1.06 16 25 C -0.08 -1.91 9.35 -39.58 -0.37 -2.28 16 26 C -0.13 -2.76 9.70 -39.58 -0.38 -3.14 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.63 5.09 -52.48 -0.27 2.37 16 32 H 0.05 1.14 7.95 -51.92 -0.41 0.72 16 33 H 0.09 2.12 3.71 -51.93 -0.19 1.93 16 34 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.08 1.06 8.01 -51.93 -0.42 0.65 16 36 H 0.09 1.50 7.44 -51.93 -0.39 1.12 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.14 2.47 7.37 -52.49 -0.39 2.08 16 41 H 0.12 3.13 7.57 -52.49 -0.40 2.73 16 42 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -32.06 356.47 -8.64 -40.70 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.14 Total: -1.25 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.78 Total: -3.95 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.25 Total: -19.85 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.40 Total: -39.76 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -3.95 Total: 18.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.06 -8.64 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025104861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds