Wall clock time and date at job start Tue Mar 24 2020 11:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38240 * 120.00061 * 180.34228 * 3 2 1 5 5 C 1.38234 * 119.99667 * 359.88520 * 4 3 2 6 6 C 1.50702 * 119.99485 * 180.10960 * 5 4 3 7 7 O 1.42899 * 109.47322 * 29.97972 * 6 5 4 8 8 Si 1.86303 * 109.46854 * 149.97958 * 6 5 4 9 9 H 1.48500 * 109.47368 * 59.99657 * 8 6 5 10 10 H 1.48495 * 109.47268 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.47086 * 300.00039 * 8 6 5 12 12 C 1.50696 * 109.47138 * 269.97614 * 6 5 4 13 13 O 1.21286 * 119.99900 * 125.00865 * 12 6 5 14 14 N 1.34773 * 120.00105 * 305.00309 * 12 6 5 15 15 C 1.46502 * 120.00088 * 180.02562 * 14 12 6 16 16 H 1.09006 * 109.46990 * 324.99887 * 15 14 12 17 17 C 1.52998 * 109.47359 * 84.99826 * 15 14 12 18 18 C 1.50692 * 109.47233 * 205.00217 * 15 14 12 19 19 C 1.38365 * 119.84646 * 319.71727 * 18 15 14 20 20 C 1.37954 * 120.15290 * 179.76497 * 19 18 15 21 21 C 1.39636 * 119.84290 * 0.51561 * 20 19 18 22 22 C 1.43196 * 120.14667 * 179.76814 * 21 20 19 23 23 N 8.74961 * 92.10503 * 241.50769 * 2 1 3 24 24 C 1.39627 * 119.69702 * 359.74267 * 21 20 19 25 25 C 1.37944 * 119.85324 * 0.02562 * 24 21 20 26 26 C 1.38234 * 120.00244 * 0.09088 * 5 4 3 27 27 C 1.38230 * 119.99880 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 29 29 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 30 30 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 31 31 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 32 32 H 1.07996 * 119.99812 * 180.02562 * 4 3 2 33 33 H 0.96994 * 120.00125 * 359.97438 * 14 12 6 34 34 H 1.09001 * 109.46858 * 300.00229 * 17 15 14 35 35 H 1.09000 * 109.47423 * 59.99899 * 17 15 14 36 36 H 1.09006 * 109.47432 * 180.02562 * 17 15 14 37 37 H 1.07999 * 119.92345 * 0.03027 * 19 18 15 38 38 H 1.07994 * 120.07617 * 180.28034 * 20 19 18 39 39 H 1.08009 * 120.07176 * 179.97438 * 24 21 20 40 40 H 1.08001 * 119.92917 * 180.02562 * 25 24 21 41 41 H 1.08001 * 119.99769 * 180.02562 * 26 5 4 42 42 H 1.08000 * 120.00376 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0072 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0172 7 8 6.2574 1.1659 0.6566 8 14 6.4028 -1.5224 0.8565 9 1 5.9053 -2.7338 0.1563 10 1 7.8877 -1.5221 0.8518 11 1 5.9126 -1.5246 2.2583 12 6 6.2760 0.0023 -1.4397 13 8 7.0449 0.8633 -1.8120 14 7 5.8665 -0.9524 -2.2983 15 6 6.3504 -0.9506 -3.6811 16 1 6.4707 0.0776 -4.0226 17 6 7.6978 -1.6721 -3.7509 18 6 5.3548 -1.6594 -4.5626 19 6 4.7312 -2.8091 -4.1111 20 6 3.8151 -3.4603 -4.9110 21 6 3.5258 -2.9627 -6.1832 22 6 2.5796 -3.6363 -7.0208 23 7 1.8284 -4.1711 -7.6847 24 6 4.1628 -1.8051 -6.6345 25 6 5.0731 -1.1612 -5.8224 26 6 3.5805 -1.1971 -0.0114 27 6 2.1982 -1.1971 -0.0056 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5182 31 1 1.6582 2.1325 0.0045 32 1 4.1205 2.1325 -0.0067 33 1 5.2519 -1.6412 -2.0005 34 1 8.4179 -1.1593 -3.1132 35 1 7.5776 -2.7002 -3.4094 36 1 8.0581 -1.6703 -4.7797 37 1 4.9589 -3.1951 -3.1285 38 1 3.3257 -4.3550 -4.5555 39 1 3.9438 -1.4151 -7.6176 40 1 5.5663 -0.2655 -6.1701 41 1 4.1206 -2.1324 -0.0147 42 1 1.6582 -2.1324 -0.0048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026128718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 11:02:34 Heat of formation + Delta-G solvation = -21.058741 kcal Electronic energy + Delta-G solvation = -26712.381882 eV Core-core repulsion = 23008.257281 eV Total energy + Delta-G solvation = -3704.124601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.02280 -38.90660 -37.99334 -36.68294 -34.81940 -33.26340 -31.51195 -31.09896 -30.32013 -30.01594 -29.23246 -26.47150 -24.80475 -23.54000 -22.98221 -21.84827 -21.12486 -20.09328 -19.17691 -18.84824 -16.64546 -16.06613 -15.44417 -15.04055 -14.88371 -14.71471 -14.43508 -14.27577 -14.20376 -13.80822 -13.66818 -13.44619 -13.34428 -13.23556 -12.91290 -12.80682 -12.65007 -12.59481 -12.25382 -12.16538 -11.92319 -11.62179 -11.54054 -11.25919 -11.18128 -10.82002 -10.50393 -10.37246 -10.31777 -9.85618 -9.54804 -9.21326 -8.97887 -8.78209 -8.27022 -8.13503 -7.57048 -6.01417 -5.49077 0.57963 1.16274 2.12104 2.22608 2.47312 2.76207 3.15740 3.29618 3.38169 3.66822 3.70436 3.87780 4.08707 4.48750 4.63032 4.65888 4.67829 4.70810 5.15489 5.28367 5.39453 5.43000 5.44172 5.55613 5.61639 5.70416 5.76864 5.79298 5.84333 5.88131 6.02726 6.08059 6.10222 6.10970 6.16519 6.34891 6.38651 6.46658 6.53730 6.63089 6.77213 6.87336 6.93064 7.24438 7.28679 7.30898 7.38018 7.70802 7.90826 8.45553 9.39016 9.94306 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005084 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.599962 B = 5506.133037 C = 7153.125583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.119 4.119 3 C -0.128 4.128 4 C -0.079 4.079 5 C -0.060 4.060 6 C 0.026 3.974 7 O -0.809 6.809 8 Si 0.929 3.071 9 H -0.296 1.296 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.494 3.506 13 O -0.533 6.533 14 N -0.744 5.744 15 C 0.170 3.830 16 H 0.096 0.904 17 C -0.158 4.158 18 C -0.045 4.045 19 C -0.114 4.114 20 C -0.063 4.063 21 C -0.042 4.042 22 C 0.261 3.739 23 N -0.428 5.428 24 C -0.066 4.066 25 C -0.111 4.111 26 C -0.156 4.156 27 C -0.122 4.122 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.391 0.609 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -8.140 -9.404 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.061 4.061 6 C -0.078 4.078 7 O -0.753 6.753 8 Si 0.757 3.243 9 H -0.226 1.226 10 H -0.204 1.204 11 H -0.195 1.195 12 C 0.284 3.716 13 O -0.407 6.407 14 N -0.403 5.403 15 C 0.065 3.935 16 H 0.114 0.886 17 C -0.217 4.217 18 C -0.046 4.046 19 C -0.133 4.133 20 C -0.084 4.084 21 C -0.045 4.045 22 C -0.054 4.054 23 N -0.103 5.103 24 C -0.087 4.087 25 C -0.130 4.130 26 C -0.174 4.174 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.227 0.773 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.114 -8.735 -10.085 14.676 hybrid contribution -0.173 -0.055 0.263 0.320 sum -6.288 -8.790 -9.822 14.604 Atomic orbital electron populations 1.20667 0.92327 1.01737 1.01354 1.19674 0.95056 0.93540 1.03590 1.21026 0.94585 0.96694 1.02344 1.21092 0.92389 0.99583 0.96590 1.21431 0.99277 0.92079 0.93318 1.22561 0.88693 1.07132 0.89411 1.95086 1.81122 1.30574 1.68506 0.86627 0.80220 0.74982 0.82432 1.22561 1.20376 1.19500 1.23830 0.79862 0.78813 0.89073 1.90450 1.35205 1.37089 1.77947 1.46848 1.51013 1.32980 1.09493 1.19787 0.91089 0.99703 0.82945 0.88648 1.22188 0.96860 1.00628 1.01990 1.20439 0.95357 0.94258 0.94577 1.20969 0.96690 0.95308 1.00307 1.21130 0.96307 0.99253 0.91691 1.15979 0.97984 0.97101 0.93474 1.25779 0.93093 0.93325 0.93245 1.81254 1.10431 1.09143 1.09465 1.21121 0.94782 0.92993 0.99781 1.20991 0.98090 1.00408 0.93480 1.21203 0.94229 0.98073 1.03876 1.20752 0.93989 0.96660 1.02639 0.92135 0.92329 0.92365 0.87283 0.85407 0.77348 0.91197 0.92441 0.92040 0.84798 0.84928 0.85008 0.84602 0.86648 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.12 -2.00 5.88 -104.62 -0.62 -2.62 16 3 C -0.13 -2.43 9.70 -39.58 -0.38 -2.81 16 4 C -0.08 -1.82 9.35 -39.58 -0.37 -2.19 16 5 C -0.06 -1.41 4.39 -104.62 -0.46 -1.87 16 6 C 0.03 0.70 0.70 -29.04 -0.02 0.68 16 7 O -0.81 -27.64 16.19 -55.09 -0.89 -28.53 16 8 Si 0.93 22.09 24.29 -169.99 -4.13 17.96 16 9 H -0.30 -5.67 6.38 56.52 0.36 -5.31 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.49 12.40 5.91 -10.99 -0.06 12.34 16 13 O -0.53 -15.30 16.17 -14.31 -0.23 -15.53 16 14 N -0.74 -14.06 4.56 -54.93 -0.25 -14.31 16 15 C 0.17 2.59 2.77 -69.09 -0.19 2.40 16 16 H 0.10 1.59 7.43 -51.93 -0.39 1.20 16 17 C -0.16 -2.17 9.46 37.16 0.35 -1.82 16 18 C -0.04 -0.53 4.96 -104.53 -0.52 -1.05 16 19 C -0.11 -1.23 9.03 -39.64 -0.36 -1.59 16 20 C -0.06 -0.60 9.76 -39.16 -0.38 -0.98 16 21 C -0.04 -0.41 5.73 -106.93 -0.61 -1.02 16 22 C 0.26 2.91 15.33 -22.47 -0.34 2.57 16 23 N -0.43 -5.68 18.54 41.85 0.78 -4.91 16 24 C -0.07 -0.60 9.76 -39.17 -0.38 -0.98 16 25 C -0.11 -1.11 9.65 -39.64 -0.38 -1.50 16 26 C -0.16 -3.04 7.64 -39.59 -0.30 -3.34 16 27 C -0.12 -2.08 9.70 -39.59 -0.38 -2.46 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 3.28 7.48 -52.49 -0.39 2.88 16 33 H 0.39 6.62 5.12 -40.82 -0.21 6.42 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.13 1.37 6.92 -52.49 -0.36 1.00 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.14 1.16 8.03 -52.49 -0.42 0.74 16 41 H 0.12 2.04 5.26 -52.49 -0.28 1.77 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -36.07 361.29 -9.45 -45.52 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.11 Total: 1.57 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -5.06 Total: -7.23 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.53 Total: -19.21 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.12 Total: -44.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.07 -9.45 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026128718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds