Wall clock time and date at job start Tue Mar 24 2020 09:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 120.00070 * 2 1 4 4 C 1.38243 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.38230 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00134 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.46831 * 30.00568 * 6 5 4 8 8 Si 1.86300 * 109.47007 * 149.99957 * 6 5 4 9 9 H 1.48503 * 109.46942 * 60.00611 * 8 6 5 10 10 H 1.48503 * 109.47276 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47372 * 300.00074 * 8 6 5 12 12 C 1.50698 * 109.47576 * 270.00428 * 6 5 4 13 13 O 1.21274 * 120.00414 * 125.00072 * 12 6 5 14 14 N 1.34776 * 119.99626 * 305.00023 * 12 6 5 15 15 C 1.46500 * 120.00293 * 179.97438 * 14 12 6 16 16 C 1.50698 * 109.47431 * 179.97438 * 15 14 12 17 17 C 1.37872 * 119.93665 * 104.72795 * 16 15 14 18 18 C 1.39661 * 119.87456 * 179.75290 * 17 16 15 19 19 C 1.43200 * 120.12715 * 180.25352 * 18 17 16 20 20 N 8.16776 * 95.64890 * 251.33714 * 2 1 3 21 21 C 1.39710 * 119.74841 * 0.53624 * 18 17 16 22 22 C 1.37829 * 119.87365 * 359.71375 * 21 18 17 23 23 C 1.38615 * 119.93874 * 284.99573 * 16 15 14 24 24 F 1.35107 * 119.87326 * 0.02562 * 23 16 15 25 25 C 1.38241 * 120.00023 * 0.27991 * 5 4 3 26 26 C 1.38234 * 119.99684 * 359.51018 * 25 5 4 27 27 H 1.09000 * 109.47467 * 89.99787 * 1 2 3 28 28 H 1.09001 * 109.47401 * 209.99945 * 1 2 3 29 29 H 1.09003 * 109.47037 * 330.00095 * 1 2 3 30 30 H 1.08000 * 120.00265 * 359.97438 * 3 2 1 31 31 H 1.07992 * 119.99854 * 180.02562 * 4 3 2 32 32 H 0.97003 * 120.00627 * 359.97438 * 14 12 6 33 33 H 1.09001 * 109.46823 * 300.00504 * 15 14 12 34 34 H 1.09002 * 109.46583 * 59.99491 * 15 14 12 35 35 H 1.08001 * 120.06244 * 0.02562 * 17 16 15 36 36 H 1.08007 * 120.06316 * 179.69062 * 21 18 17 37 37 H 1.08003 * 119.93856 * 179.97438 * 22 21 18 38 38 H 1.08000 * 119.99931 * 179.72964 * 25 5 4 39 39 H 1.08000 * 119.99852 * 180.28050 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0016 7 8 6.2550 1.1672 0.6744 8 14 6.3995 -1.5205 0.8812 9 1 5.9046 -2.7336 0.1821 10 1 7.8846 -1.5203 0.8818 11 1 5.9046 -1.5193 2.2812 12 6 6.2811 -0.0013 -1.4191 13 8 7.0513 0.8586 -1.7908 14 7 5.8745 -0.9582 -2.2768 15 6 6.3624 -0.9591 -3.6582 16 6 5.7621 -2.1240 -4.4023 17 6 4.7451 -1.9111 -5.3086 18 6 4.1932 -2.9910 -6.0012 19 6 3.1405 -2.7754 -6.9478 20 7 2.3110 -2.6010 -7.7007 21 6 4.6680 -4.2832 -5.7628 22 6 5.6815 -4.4847 -4.8507 23 6 6.2295 -3.4082 -4.1701 24 9 7.2222 -3.6117 -3.2765 25 6 3.5805 -1.1973 -0.0037 26 6 2.1981 -1.1972 0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1323 0.0010 32 1 5.2588 -1.6463 -1.9796 33 1 6.0738 -0.0281 -4.1461 34 1 7.4488 -1.0484 -3.6597 35 1 4.3790 -0.9106 -5.4858 36 1 4.2414 -5.1226 -6.2919 37 1 6.0490 -5.4832 -4.6653 38 1 4.1205 -2.1326 -0.0073 39 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361882314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 09:38:03 Heat of formation + Delta-G solvation = -62.246172 kcal Electronic energy + Delta-G solvation = -26970.072325 eV Core-core repulsion = 22950.245347 eV Total energy + Delta-G solvation = -4019.826978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.09814 -39.81135 -38.90967 -37.88515 -36.68772 -34.35645 -33.23939 -31.50370 -31.15133 -30.30805 -29.95612 -26.90326 -25.97646 -24.05199 -23.28287 -22.17850 -21.84026 -20.33843 -19.12181 -18.50890 -17.81791 -16.96193 -16.19712 -15.89562 -15.14500 -15.09864 -14.76154 -14.61311 -14.27734 -14.18151 -14.15268 -13.90954 -13.77589 -13.52025 -13.29427 -13.13573 -12.83949 -12.65764 -12.58342 -12.43637 -12.15530 -12.08014 -11.92149 -11.58651 -11.27092 -11.18683 -10.49729 -10.34835 -10.30504 -9.83938 -9.56146 -9.48151 -9.06365 -8.75075 -8.23768 -8.12795 -7.56524 -5.99712 -5.47403 0.30484 0.78426 2.12768 2.23141 2.40066 2.51747 3.21824 3.32964 3.41523 3.43059 3.53857 3.88798 3.91068 4.19239 4.35707 4.39468 4.51774 4.68849 4.72547 4.92821 5.27693 5.40103 5.42331 5.44578 5.58255 5.66635 5.71322 5.79933 5.81010 5.87683 5.90855 6.06646 6.10819 6.18030 6.37844 6.38640 6.53924 6.75320 6.87745 6.93727 7.20279 7.24777 7.26120 7.38786 7.71790 7.91557 8.45707 9.39294 9.95435 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.005081 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.586942 B = 5509.506081 C = 7037.310489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.079 4.079 5 C -0.060 4.060 6 C 0.026 3.974 7 O -0.809 6.809 8 Si 0.930 3.070 9 H -0.294 1.294 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.494 3.506 13 O -0.533 6.533 14 N -0.745 5.745 15 C 0.156 3.844 16 C -0.131 4.131 17 C -0.023 4.023 18 C -0.046 4.046 19 C 0.259 3.741 20 N -0.416 5.416 21 C -0.040 4.040 22 C -0.157 4.157 23 C 0.146 3.854 24 F -0.121 7.121 25 C -0.155 4.155 26 C -0.123 4.123 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.393 0.607 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -12.335 -10.075 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.119 4.119 3 C -0.147 4.147 4 C -0.097 4.097 5 C -0.061 4.061 6 C -0.078 4.078 7 O -0.753 6.753 8 Si 0.758 3.242 9 H -0.224 1.224 10 H -0.203 1.203 11 H -0.195 1.195 12 C 0.284 3.716 13 O -0.407 6.407 14 N -0.405 5.405 15 C 0.032 3.968 16 C -0.132 4.132 17 C -0.044 4.044 18 C -0.049 4.049 19 C -0.056 4.056 20 N -0.091 5.091 21 C -0.061 4.061 22 C -0.176 4.176 23 C 0.125 3.875 24 F -0.099 7.099 25 C -0.173 4.173 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.227 0.773 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.554 -11.822 -10.860 17.339 hybrid contribution 0.096 -0.402 0.402 0.577 sum -6.458 -12.225 -10.458 17.335 Atomic orbital electron populations 1.20664 0.92317 1.01779 1.01305 1.19676 0.95061 0.93540 1.03650 1.21022 0.94573 0.96684 1.02387 1.21095 0.92390 0.99581 0.96597 1.21430 0.99279 0.92076 0.93293 1.22571 0.88695 1.07232 0.89320 1.95085 1.81241 1.30469 1.68487 0.86584 0.80282 0.75016 0.82283 1.22407 1.20320 1.19480 1.23884 0.79976 0.78864 0.88908 1.90454 1.35202 1.37129 1.77930 1.46751 1.51107 1.33090 1.09540 1.20035 0.98839 0.94098 0.83827 1.20097 0.98776 0.94265 1.00093 1.21047 0.92339 0.99003 0.92019 1.15960 0.96079 0.94715 0.98160 1.25444 0.93052 0.93970 0.93154 1.81177 1.10581 1.07038 1.10339 1.20999 0.94189 0.95434 0.95458 1.21071 0.98846 0.99101 0.98555 1.17902 0.87130 0.93489 0.88936 1.91595 1.57936 1.95574 1.64813 1.21226 0.94240 0.98133 1.03740 1.20758 0.93988 0.96661 1.02669 0.92172 0.92360 0.92304 0.87266 0.85379 0.77307 0.90492 0.90606 0.83608 0.83955 0.83428 0.86602 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.01 36.01 0.36 -0.98 16 2 C -0.12 -2.04 5.88 -104.63 -0.62 -2.66 16 3 C -0.13 -2.46 9.70 -39.58 -0.38 -2.84 16 4 C -0.08 -1.84 9.35 -39.58 -0.37 -2.21 16 5 C -0.06 -1.43 4.39 -104.63 -0.46 -1.89 16 6 C 0.03 0.71 0.70 -29.04 -0.02 0.69 16 7 O -0.81 -28.06 16.19 -55.09 -0.89 -28.96 16 8 Si 0.93 22.85 24.30 -169.99 -4.13 18.72 16 9 H -0.29 -5.99 6.38 56.52 0.36 -5.63 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.49 12.82 5.95 -10.99 -0.07 12.76 16 13 O -0.53 -15.82 16.51 -14.30 -0.24 -16.06 16 14 N -0.75 -14.76 5.09 -61.47 -0.31 -15.08 16 15 C 0.16 2.46 5.47 -5.19 -0.03 2.43 16 16 C -0.13 -1.55 5.25 -104.62 -0.55 -2.10 16 17 C -0.02 -0.23 9.37 -39.18 -0.37 -0.59 16 18 C -0.05 -0.40 5.73 -106.89 -0.61 -1.01 16 19 C 0.26 2.69 15.32 -22.55 -0.35 2.35 16 20 N -0.42 -5.29 18.52 41.75 0.77 -4.51 16 21 C -0.04 -0.28 9.75 -39.18 -0.38 -0.66 16 22 C -0.16 -1.23 10.01 -39.58 -0.40 -1.63 16 23 C 0.15 1.62 7.25 -39.29 -0.28 1.34 16 24 F -0.12 -1.63 16.74 2.25 0.04 -1.59 16 25 C -0.16 -3.11 7.63 -39.58 -0.30 -3.41 16 26 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.13 3.32 7.48 -52.49 -0.39 2.92 16 32 H 0.39 7.09 6.68 -40.82 -0.27 6.82 16 33 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 34 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.15 1.32 8.00 -52.49 -0.42 0.90 16 36 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 2.14 5.26 -52.49 -0.28 1.87 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -37.14 349.39 -8.68 -45.83 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.98 Total: -0.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -5.21 Total: -2.94 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.46 Total: -19.59 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.13 Total: -45.02 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.14 -8.68 -45.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361882314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.418 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds